|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048383 ID=TCONS_00048383|Name=TCONS_00048383|organism=Clytia hemisphaerica|type=transcript|length=1883bp
TTCAGATATtacaaaaccaatttttttagaatagagatttcgaacaagcg
aaggagagttctggtctgtaaagtatacaaactgagtaggtagtaagtag
taagcagtaggtagtaagtattaagtagtaggtagtaggcgttttgtact
tgccgcaTTTCCAACGCAAAAGGGCTAGTTTTCCAAGGAGGAgtctcaat
ttcacaaaaatgtaatttccacgtATGAAttttttacgttttccaaattg
tttggagaaacacacattttcaatgcaaaaagacttaattttcaaaaaaa
gctctttGATCAATgcgctaccttaattcaaaaggggcctaagtccaggt
accccccagttcaaaaggggcctaagtccatttttatgaaatttgagatc
tttagtttttctcaatctctggCTCATTTGCTCTCTTTTGATGTACATAA
CAAGTAGTTTTTGAAGTTAAAACGGTTCAAAACTTCATACTGAAGCTCTG
ATAAAAGTgatgtttaattcaaaagaggcctaagtccatcatctttttac
aattaagggcctaagtccatcaacNGTGTTGATCAGATTTTCAATATAGA
AAGTTGAGGAAATGGCAGGTACCATAGATAACATGATTACAGCTGTCATA
AACCTTGTGAAAACAAATGGAATAGCATCATTGATTATTATTGTGATTGT
GATTCATGGTTTCACCTCAAAGATTTTAGCATGGGTCAATAAAaaagATG
AAAACCGTGCTCAAGGAGGGTCGACAGAGAACAACCAGGAGAAGATCACA
GATGATACCAATGAACATTTGTTATCGCATGGAGGCGAAGATTGTGATAT
GGTTCCATACAAACAGACCACTTACAGTGAAGATGAGATGAAGAAAAGAA
GTCAAAGTTTTTATGAAGATATCAACCATAGAAGGAGTGTACGATTTTTC
AGTGACAAAGATGTACCCATTGAAGTCATTGAGAACTGTATCAGAACTGC
AGGAACTTCACCAAGTGGCGCTCACATGCAGCCTTGGACATTTGTTGTTA
TAAAGCAAGCTGACATCAAAGCACAAATCCGCGAAATAATCGAAGAAGAG
GAGGAGATCAACTACAAAAAGAGAATGTCTGAAACATGGAAAAAAGATCT
CAAACGACTTCGCACTAATTGGGAAAAACCATACCTTGAAACTGCTCCTT
ATTTAGTTTTGGTTTTCAAGCAAACGCATGGTTTAACTGAAGATGGGCAG
AAGATTACACATTATTACACTGAAGAAAGTGTTGGTTTATCTTGTGGTTT
ATTTCTTGCAGCTGTTCAAAATGCTGGCCTTGTTACTTTAACGTCAACAC
CAATGAATGCTGGTCCAAAGATTAGGATGTTGTTGAACCGTGGCTCGAAT
GAGAAATTATTCTTATTGTTACCTGTTGGTTATGCAGCTGACGATTGTAA
GGTTCCTGATTTGAAGAGGAAAAGCTTAGATGAAATTATGGTATTATTTT
AGAAATGACATTTTGTagtgttaaaatattttgtacAACTTGGTATTTAT
ACATATTCTTTTGACTATTTTTCATATGATCCCCTTATTACCTCATTCTA
GTAGACTGTACATTATGAAatccttttgtatttattttaggTTTTGTTCT
GTTGGTGCATTAACTAGTCTTGATGGTATTTTGTAAAATTCCCAACCCTA
TTCGATAAATCAGTATGACTGGAAATACCATATTTATAACAGTTTCAATA
TGCTTTATCTTAGGAGGGTTTAGGAGATATTGTTTTATTTCTTAGGGAGT
CTAcctagatttttttgaaaaatttctccaGAGATTATCCAAGCTTTTTT
GCTTACATAAAGACAGTAAAATTTATTAAAGAA Run BLAST on NCBI transcript from alignment at scaffold_142:573853..577067- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048383 ID=TCONS_00048383|Name=TCONS_00048383|organism=Clytia hemisphaerica|type=transcript|length=3215bp|location=Sequence derived from alignment at scaffold_142:573853..577067- (Clytia hemisphaerica)
TTCAGATATTACAAAACCAATTTTTTTAGAATAGAGATTTCGAACAAGCG
AAGGAGAGTTCTGGTCTGTAAAGTATACAAACTGAGTAGGTAGTAAGTAG
TAAGCAGTAGGTAGTAAGTATTAAGTAGTAGGTAGTAGGCGTTTTGTACT
TGCCGCATTTCCAACGCAAAAGGGCTAGTTTTCCAAGGAGGAGTCTCAAT
TTCACAAAAATGTAATTTCCACGTATGAATTTTTTACGTTTTCCAAATTG
TTTGGAGAAACACACATTTTCAATGCAAAAAGACTTAATTTTCAAAAAAA
GCTCTTTGATCAATGCGCTACCTTAATTCAAAAGGGGCCTAAGTCCAGGT
ACCCCCCAGTTCAAAAGGGGCCTAAGTCCATTTTTATGAAATTTGAGATC
TTTAGTTTTTCTCAATCTCTGGCTCATTTGCTCTCTTTTGATGTACATAA
CAAGTAGTTTTTGAAGTTAAAACGGTTCAAAACTTCATACTGAAGCTCTG
ATAAAAGTGATGTTTAATTCAAAAGAGGCCTAAGTCCATCATCTTTTTAC
AATTAAGGGCCTAAGTCCATCAACNGTGTTGATCAGATTTTCAATATAGA
AAGTTGAGGAAATGGCAGGTACCATAGATAACATGATTACAGCTGTCATA
AACCTTGTGAAAACAAATGGAATAGCATCATTGATTATTATTGTGATTGT
GATTCATGGTTTCACCTCAAAGATTTTAGCATGGGTCAATAAAAAAGGTA
TATAATAAAATCATATTATGTAAATTAAGACATATGATAGAAGTGCTGGC
CACCATGGAAGTATTTTCCCAGGAAATCCTTTATTGCAAATTTAAAAATA
AAAAAAGGGGTAACTCAAAATTGGGGGAACTCAAAATTGGGGGGTTACTT
TTGAATTCTAAAAATTTTTCGGGTACCAAATTGATTGGGGGTACCTAAAT
TTTTTGGGGGTACCTGAACCCTATGATGACATTATAAAGATACATCAAGG
CAAATGTATCTTACATCTTTCAAGAGGTACTTTATATGTTTTTAAATTGT
TGCATTTAAAAGAAATGTCTCTAATTCATTCTTAACCAAAAAACTTTTAT
GTTTGCTGCCAATTAAAAGTGTGTTTCCATAATCTAGTATTGCATTTGGG
TTCTGCTTAAAATGATTTTTTATCATAATACATGAGAAATTCCTTCTGCA
ATTCATCATGAATCAATTATGAAGGCTTCTGTTAAATTATTTCTCATCCA
AGATGAAAACCGTGCTCAAGGAGGGTCGACAGAGAACAACCAGGAGAAGA
TCACAGATGATACCAATGAACATTTGTTATCGCATGGAGGCGAAGATTGT
GATATGGTTCCATACAAACAGACCACTTACAGTGAAGATGAGATGAAGAA
AAGAAGTCAAAGTTTTTATGAAGATATCAACCATAGAAGGAGTGTACGAT
TTTTCAGTGACAAAGATGTACCCATTGAAGTCATTGAGAACTGTATCAGA
ACTGCAGGTGAAAGTGCTGTTGTTTATGAAGCAATTTTTGGGTTTGGGTT
TTATTTACTATGAATTGAGACAGTGAAAACAGAGAATTTAAATGTGCAAA
TAGATCTATTTGTTTTTCAATGGGTTTTAGAAATGAGTAACATATTGGGA
CAATGTTTCAAATCAAAAATAAATGTTTTCACCATGCAGAAAAATAAGGA
TGATCTTATTGGAAAGTGTATGATATATGATTATGTCATGATAAGTCTCC
CTAAGTAAGTAACATAAGTAGTTTCGTTCTACTCATTTTAGGAACTTCAC
CAAGTGGCGCTCACATGCAGCCTTGGACATTTGTTGTTATAAAGCAAGCT
GACATCAAAGGTGAACACTTTATTGTAAATTTGATAAAACTAATTTCTAC
TCTATAGATATTTTATGTTTTAATGTTTTAATCTATTATCAGATGTCCAT
CAGGTAGGCATTCTAATTCGCATTGGCATTTGGCTATTGCCGACACAAAT
GCCAATTTAAATTTGGCTTTTGCTGACGTGAAATGTGCTTACTGTAAATA
GAAGCCATAATTATTTACTAACACAAATAAATCTGAATTAGAAAGGCTGC
TTAGGTCTGTTTTTATGGAACAACACTAGGTTTCATTATCAAGAAAATGT
TTGGTTGTGTCGATGGTACTCCTAAAACTTCACCCTTTTTGAATTTAGGT
GTTTGGCAACGAAAGCAATATGCAAGTGAAATCCAAATTAATGTATATAA
TGTAAATTAATCACATTCCTCATAAATTTTAGGTATGTGTGGACGTGTGG
ACCTAGTTTATTATTGTCAATAGGAAAAATTAATTGTATAGATAATCATA
ACATTATACTCTTAGTTACTTTTTACTTTTATATTGGCTTTTGTTATTTG
CAGCACAAATCCGCGAAATAATCGAAGAAGAGGAGGAGATCAACTACAAA
AAGAGAATGTCTGAAACATGGAAAAAAGATCTCAAACGACTTCGCACTAA
TTGGGAAAAACCATACCTTGAAACTGCTCCTTATTTAGTTTTGGTTTTCA
AGCAAACGCATGGTTTAACTGAAGATGGGCAGAAGATTACACATTATTAC
ACTGAAGAAAGTGTTGGTTTATCTTGTGGTTTATTTCTTGCAGCTGTTCA
AAATGCTGGCCTTGTTACTTTAACGTCAACACCAATGAATGCTGGTCCAA
AGATTAGGATGTTGTTGAACCGTGGCTCGAATGAGAAATTATTCTTATTG
TTACCTGTTGGTTATGCAGCTGACGATTGTAAGGTTCCTGATTTGAAGAG
GAAAAGCTTAGATGAAATTATGGTATTATTTTAGAAATGACATTTTGTAG
TGTTAAAATATTTTGTACAACTTGGTATTTATACATATTCTTTTGACTAT
TTTTCATATGATCCCCTTATTACCTCATTCTAGTAGACTGTACATTATGA
AATCCTTTTGTATTTATTTTAGGTTTTGTTCTGTTGGTGCATTAACTAGT
CTTGATGGTATTTTGTAAAATTCCCAACCCTATTCGATAAATCAGTATGA
CTGGAAATACCATATTTATAACAGTTTCAATATGCTTTATCTTAGGAGGG
TTTAGGAGATATTGTTTTATTTCTTAGGGAGTCTACCTAGATTTTTTTGA
AAAATTTCTCCAGAGATTATCCAAGCTTTTTTGCTTACATAAAGACAGTA
AAATTTATTAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048383-exon-scaffold_142-1575043694:576321..577067 | TCONS_00048383-exon-scaffold_142-1575043694:576321..577067 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1575043694:575561..575815 | TCONS_00048383-exon-scaffold_142-1575043694:575561..575815 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1575043694:575208..575276 | TCONS_00048383-exon-scaffold_142-1575043694:575208..575276 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1575043694:573853..574664 | TCONS_00048383-exon-scaffold_142-1575043694:573853..574664 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1510915933:576321..577067 | TCONS_00048383-exon-scaffold_142-1510915933:576321..577067 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1510915933:575561..575815 | TCONS_00048383-exon-scaffold_142-1510915933:575561..575815 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1510915933:575208..575276 | TCONS_00048383-exon-scaffold_142-1510915933:575208..575276 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1510915933:573853..574664 | TCONS_00048383-exon-scaffold_142-1510915933:573853..574664 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1491911889:576321..577067 | TCONS_00048383-exon-scaffold_142-1491911889:576321..577067 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1491911889:575561..575815 | TCONS_00048383-exon-scaffold_142-1491911889:575561..575815 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1491911889:575208..575276 | TCONS_00048383-exon-scaffold_142-1491911889:575208..575276 | Clytia hemisphaerica | exon |
| TCONS_00048383-exon-scaffold_142-1491911889:573853..574664 | TCONS_00048383-exon-scaffold_142-1491911889:573853..574664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:573853..577067 - |
Blast
BLAST of TCONS_00048383 vs. Swiss-Prot (Human)
Match: IYD1 (Iodotyrosine deiodinase 1 OS=Homo sapiens GN=IYD PE=1 SV=2) HSP 1 Score: 283.108 bits (723), Expect = 1.744e-89 Identity = 142/258 (55.04%), Postives = 184/258 (71.32%), Query Frame = 3
Query: 741 KKDENRAQGGSTENNQEKITDDTNEHLLSHGG-------EDCDMVPYKQTTYSEDEMKKRSQSFYEDINHRRSVRFFSDKDVPIEVIENCIRTAGTSPSGAHMQPWTFVVIKQADIKAQIRXXXXXXXXXNYKKRMSETWKKDLKRLRTNWEKPYLETAPYLVLVFKQTHGLTEDGQKITHYYTEESVGLSCGLFLAAVQNAGLVTLTSTPMNAGPKIRMLLNRGSNEKLFLLLPVGYAADDCKVPDLKRKSLDEIMV 1493
KK E R + + E + D ++ H E+ + +P+ Y E EM KRSQ FYE +N RRSVRF S++ VP+EVI+N IRTAGT+PSGAH +PWTFVV+K D+K +IR+IIEEEEEINY KRM W DLK+LRTNW K YL+TAP L+L+FKQ HG +G+K HYY E SV ++CG+ LAA+QNAGLVT+T+TP+N GP++R+LL R ++EKL +LLPVGY + + VPDLKRK LD+IMV
Sbjct: 30 KKGEPRTRAEARPWVDEDLKDSSDLHQAEEDADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVIRTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQNAGLVTVTTTPLNCGPRLRVLLGRPAHEKLLMLLPVGYPSKEATVPDLKRKPLDQIMV 287
The following BLAST results are available for this feature:
|
