TCONS_00048302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048302
Unique NameTCONS_00048302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048302 ID=TCONS_00048302|Name=TCONS_00048302|organism=Clytia hemisphaerica|type=transcript|length=1520bp
ATACCTATTCTTTTTTCGTCGGGATTGTGTTTGCTGTTTCATTCGAGTTG
AGCTAGCTGAAGGTCGACGACTGATACGGAACGAGCTTAAGAAACTTGAA
TTATCCATAGATTTTTCAGGACCGAACATAGACTGAACAATTTCTGATAa
agcttgtttatttttattccaAGTGGTCGATTTGATTTCATCTATCGATG
CTGAATTTTTAAGGTTTGTCTTATTGTTCAGCGGTTCCTCACCAAGTGTT
TTAGATTCTGGTTTAGGTTCGTTTAGGCTTTTCTGCTTCTCCCACCAATT
TTCATAGGCTTTGAATGCAGACTGTTCTACGAGTCTCTTCAAGGTATCTC
TGCTTAAAATACGTTTCAACTCCTGACTAATATCACGAGCGCAACCTGCT
TTGActtgaaaaacaaaaggaaGATCTTGCTGTGTTGGTGCTTGTTGCTC
ATTGCTTTGTTCTTGGTATTGTtcaatgttgttgtttttgaggTGAGGTG
TATTTTGAGGCAACATTCGTTGGTTATGATGAAAGTCTCTCTGGTGTTCG
TCTTGGTATCTATGTTGAGATTGTTGCATATTAGTATGAGAATGCTGCAT
GttattattataattattgTTTTGAATCAAATTTTGTTGCATCAGAGATG
GCGCTGGTTGTTGCGGCATTTGTGGTGGTGGTTGCGGTTGGTACGACATT
TGTTGCTGAAGATTATGATTAAAGGGTGGCTGAGGTTGAGGCGGTGGTAC
AAAATTGTTCATAGGTTGCATTGGTTGATTCATGCCACCTTGTGGTGGTG
GCTGCGGTATAGGTGGAGGAAAGTAATTACCTCCAAAGTTCTGTGGCGGC
TGAGGAATCGGTAGTGGAGGAATAAGAGGGAAAGGCATTCCGCGGCCTGG
TGGTGCATTACCAGGTACTGGTAACATATTTTGTTGTGGGAGTGGAAGGT
TTTGATGCTGATGAATATTCAACTCGACTTTATTGTTAGCATCAGTTGGA
CTGATTGGTGACAATGACATATTGTCATCATCTTGACCACCACCAGTCGC
TGATGCAGGTGAAATATCTTCCACTTGGTCTTTATTAGTTTCAGAGTCAG
AAATCGCTTCATAAGCTGTATTCGAATGTTTATTTCTAGGACTCTTTGGT
GAGTTTGATTGGTCTGATACTGGACTATACTTTGagtttcttgattttga
tttgtAATATTTATTAGAAGGGGGTGGAGGTGGAGGATGTGACCTCTCTG
AAGGTCCACCCATAGATGGAGGCGTCATGGGTCCAGTGCGACCTCCATAA
CTATTAGATGGAGGAGGAGGCGGAGGAATAGATTGATTGTTCATGTAGCT
TGGAGCAACTGGTTGATTGCGTTGGAAAGAACCTATTGTTGGTGTCGAGG
GCGTCGACTGATGTTGCGATGATATAGGTTGAACTGGAGGAGGTCGACAA
GCATCAGCTATTTTGGCATCCCTGGCTAAGCATTCAACTTCTAATTGTTT
CCAAATGCTATGACCTGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_142:629130..630708+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048302 ID=TCONS_00048302|Name=TCONS_00048302|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at scaffold_142:629130..630708+ (Clytia hemisphaerica)
ATACCTATTCTTTTTTCGTCGGGATTGTGTTTGCTGTTTCATTCGAGTTG
AGCTAGCTGAAGGTCGACGACTGATACGGAACGAGCTTAAGAAACTTGAA
TTATCCATAGATTTTTCAGGACCGAACATAGACTGAACAATTTCTGATAa
agcttgtttatttttattccaAGTGGTCGATTTGATTTCATCTATCGATG
CTGAATTTTTAAGGTTTGTCTTATTGTTCAGCGGTTCCTCACCAAGTGTT
TTAGATTCTGGTTTAGGTTCGTTTAGGCTTTTCTGCTTCTCCCACCAATT
TTCATAGGCTTTGAATGCAGACTGTTCTACGAGTCTCTTCAAGGTATCTC
TGCTTAAAATACGTTTCAACTCCTGACTAATATCACGAGCGCAACCTGCT
TTGActtgaaaaacaaaaggaaGATCTTGCTGTGTTGGTGCTTGTTGCTC
ATTGCTTTGTTCTTGGTATTGTtcaatgttgttgtttttgaggTGAGGTG
TATTTTGAGGCAACATTCGTTGGTTACNTGTTCAATGTTGTTGTTTTGGA
GGTGAGGTGTATTCTGAGGCAACATTCGTTGGTTATGATGAAAGTCTCTC
TGGTGTTCGTCTTGGTATCTATGTTGAGATTGTTGCATATTAGTATGAGA
ATGCTGCATGttattattataattattgTTTTGAATCAAATTTTGTTGCA
TCAGAGATGGCGCTGGTTGTTGCGGCATTTGTGGTGGTGGTTGCGGTTGG
TACGACATTTGTTGCTGAAGATTATGATTAAAGGGTGGCTGAGGTTGAGG
CGGTGGTACAAAATTGTTCATAGGTTGCATTGGTTGATTCATGCCACCTT
GTGGTGGTGGCTGCGGTATAGGTGGAGGAAAGTAATTACCTCCAAAGTTC
TGTGGCGGCTGAGGAATCGGTAGTGGAGGAATAAGAGGGAAAGGCATTCC
GCGGCCTGGTGGTGCATTACCAGGTACTGGTAACATATTTTGTTGTGGGA
GTGGAAGGTTTTGATGCTGATGAATATTCAACTCGACTTTATTGTTAGCA
TCAGTTGGACTGATTGGTGACAATGACATATTGTCATCATCTTGACCACC
ACCAGTCGCTGATGCAGGTGAAATATCTTCCACTTGGTCTTTATTAGTTT
CAGAGTCAGAAATCGCTTCATAAGCTGTATTCGAATGTTTATTTCTAGGA
CTCTTTGGTGAGTTTGATTGGTCTGATACTGGACTATACTTTGagtttct
tgattttgatttgtAATATTTATTAGAAGGGGGTGGAGGTGGAGGATGTG
ACCTCTCTGAAGGTCCACCCATAGATGGAGGCGTCATGGGTCCAGTGCGA
CCTCCATAACTATTAGATGGAGGAGGAGGCGGAGGAATAGATTGATTGTT
CATGTAGCTTGGAGCAACTGGTTGATTGCGTTGGAAAGAACCTATTGTTG
GTGTCGAGGGCGTCGACTGATGTTGCGATGATATAGGTTGAACTGGAGGA
GGTCGACAAGCATCAGCTATTTTGGCATCCCTGGCTAAGCATTCAACTTC
TAATTGTTTCCAAATGCTATGACCTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030745XLOC_030745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048302-exon-scaffold_142-1491911889:629130..629638TCONS_00048302-exon-scaffold_142-1491911889:629130..629638Clytia hemisphaericaexon
TCONS_00048302-exon-scaffold_142-1510915933:629130..629638TCONS_00048302-exon-scaffold_142-1510915933:629130..629638Clytia hemisphaericaexon
TCONS_00048302-exon-scaffold_142-1575043694:629130..629638TCONS_00048302-exon-scaffold_142-1575043694:629130..629638Clytia hemisphaericaexon
TCONS_00048302-exon-scaffold_142-1491911889:629698..630708TCONS_00048302-exon-scaffold_142-1491911889:629698..630708Clytia hemisphaericaexon
TCONS_00048302-exon-scaffold_142-1510915933:629698..630708TCONS_00048302-exon-scaffold_142-1510915933:629698..630708Clytia hemisphaericaexon
TCONS_00048302-exon-scaffold_142-1575043694:629698..630708TCONS_00048302-exon-scaffold_142-1575043694:629698..630708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:629130..630708 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.146759	0	0.588142	0	0	1.46407	0.353697	0	0.222662	0	0	1.52152e-06	0	0	1.76983	0	0	0	0	0	0	0	0	0	0	1.71222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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