TCONS_00048305 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048305
Unique Name	TCONS_00048305
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1116

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_142:667215..672225+

transcript sequence

>TCONS_00048305 ID=TCONS_00048305|Name=TCONS_00048305|organism=Clytia hemisphaerica|type=transcript|length=1116bp
CGAGATGAAACTATAATTTATTTGGCATTTGTTTATGATATTAAATTTGA
TAAGACGTGAGTGTATCATAGaatatagaagaaaaaaaactactATGAAA
CCCCATCTTTGCCGATAGACACTGGCTGATTATTTCACTGGGTAACATTG
GAATGGGGAAGAAGGAGAGAtctttcgagaaaattagtttgcTCCCTGCA
AATGAAGATGACGGCCAAATAGACATTAACAATGGTTTCTATGAGCCCCA
GTACACTGTCAATGAATGTTTGGAATATATTGGTTTCGGATGGTTTCAAG
TGAAGTTGACTGTTGTCCTTGGCTTCAGCTGGATGGCAGACGCAATAGCG
ATCACATCCTTGGCAGTGCTGGCACCTGCATTACAATGTGATTGGAACCT
CTCTCCCGAACAAACAGCACTTATATCTACTTGTGTATTTATTGGCATGT
TTTTCGGTGCCGGCTTTTGGGGATGGTTTTGTGATACCTTTGGAAGAAAA
TTGGCATTGACATTGAGTGCATCATTGATTCTTGTCTCCTTCCTGTGCAG
TTCTTTCGCAATCAACTATAATTTTGTGTTGATCTTTATGATTATGGAAG
GCTTTTCAGTTGCTGGTGCTGGCCAATCattttctttGTGTTGGGTAATG
TGTTATCAGGACTTGTTGCAGTCTTTGTGATGAATCAGCACGGATGGAGG
TGGTTTGTGAGGATGACCTCTATCCCTATCTTCAttctcattcttttttt
atggTGGTTGCCAGAATCGCCAAGATATTTGATCGGTATCGGAAAACGAG
AAGCTGCTGCCAAAGTTTTGTCGAGAATCGCTGATGAAAACAACACGCAA
CTTCCCAACGGGAAATTGAAAATACTGCCTTGTTATCAAAGAAAACCGAG
GGGTCGTATCATCGACTTGTTGACAATTGATCAAAGACGGACGACTATCT
TGCTCTGGTTTCTATGGTTCAGTGCAGTGTTTTGTTACTACGGTGTATTG
TTGTGTACCACCTTACttcttaaggtggtagtctaccgccagatttcaaa
agtcaaaaaatcacattttttgcaataactcaagaacttctttacatttc
gtaatgaaattttcag

Run BLAST on NCBI

transcript from alignment at scaffold_142:667215..672225+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048305 ID=TCONS_00048305|Name=TCONS_00048305|organism=Clytia hemisphaerica|type=transcript|length=5011bp|location=Sequence derived from alignment at scaffold_142:667215..672225+ (Clytia hemisphaerica)
CGAGATGAAACTATAATTTATTTGGCATTTGTTTATGATATTAAATTTGA
TAAGACGTGAGTGTATCATAGaatatagaagaaaaaaaactactATGAAA
CCCCATCTTTGCCGATAGACACTGGCTGATTATTTCACTGGGTAACATTG
GAATGGGGAAGAAGGAGAGAtctttcgagaaaattagtttgcTCCCTGCA
AATGAAGATGACGGCCAAATAGACATTAACAATGGTAAGTGTGATATCTA
ttacacgttttcttataagaacaaactatataagaacacaaggcttggat
ggccaaaatgttaagaaccagtaaagagcattttaaggctttgaggactc
taaaacactcgaAGGCTTatcaaaatacacaaaaatactcacaaaataag
aacatgttgagaacatctttaggctttaaaactttggatgctcttataaa
aaggtAGGAAAAATTCTCTACAATTTCAGCTGTAATGGAAACTTGATTAT
TTTTCCTCTCCgataaatttaaaattcaatgtggaaaaaaattgcactcc
aaaaccatcccgcacaggatagaaattatatccccattgagatttcgaaA
GACGTTTCCATCCTCACTGTAGCAAGTAGTTTCaaggggctgtgagacag
gggtgtttgtaGATATAGGACGATATGCTTggcagtggcgtggtggcagg
gggggccaggggggccaGGCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccaagaaggatttt
tcaggcgcccatatcgaaagattgacaaatgaaaaaacaaaaatggcgcc
cctcatcacctcaaaaactcaaaattttctggctcgctacgctcgcacac
tcccttctttgtgttcataatgagcgtatagagagAGGGgcaccaaaaac
aaaaaatctttaaaaagggcgccatttttgccttggccaccccagagaaa
ttttcccaccacgccactgatgCTTGGTATTCACTCAGGATAACCTTTCT
TGTAGGTTTCTATGAGCCCCAGTACACTGTCAATGAATGTTTGGAATATA
TTGGTTTCGGATGGTTTCAAGTGAAGTTGACTGTTGTCCTTGGCTTCAGC
TGGGTAAGATTTATTGCAGTGTTTTATATCGATGCTGCACAGTTAAACCT
CTGAAGTTTAAGTCTGGAAGGCTAGAGAAGTATTGGTTTTTTAGAGACTA
TGGAAAGTATTGGCGAGATCATTGACTAccaagcccaaagggctagactc
gagactcctggatgggaaaaatgaagcaacttaCTCCCCATTCTAAGCGC
GTGACCAGCATGGGCacacaaacgctggattgaaagtaaaaacatatcgt
cagatttcaaaaaaaaatgccacgtgaaaacaaagaaagtgctagattTT
ATCAAATCAGCTTCACTTCACTTCTTATTGCTCGAGAAAGGCTGAAGACT
TATCCCTTTCGGGGCTTTAATCTGAATGGGTGAGAATATGAGTAAAATTG
TATTGTCCGACAGTCTTCGCATCAATTGATATAAAGCGAAGGCTAATTCA
AAGATTAAAACATatgaaaaaattgacaaaattttcacaatttttagaAC
ACGGTCTAAAGCTTTAAGGATGATGAATTTTGTAATGCTTCTGAAAATAc
taattttgattggttcttaCATATTTTCAGATGGCAGACGCAATAGCGAT
CACATCCTTGGCAGTGCTGGCACCTGCATTACAATGTGATTGGAACCTCT
CTCCCGAACAAACAGCACTTATATCTACTGTAAGATTTAACGATATCGTG
CAAGCATTTCTTCGTTATTCGAACATATTTAACGATTATTAAACTTTTTA
ATGCTGTAAAAATCTCAAAGTTACTTTAATTTTAATTACTGAATGAGTTA
ACGGCTTAGTTTTCCAAATTGTAGGTGATaagtttgtttatttatgtTTA
TTGTACCAACCGAATTTGTGAATGTCTTCTTAAATTTCTCTGTTTCAGTG
TGTATTTATTGGCATGTTTTTCGGTGCCGGCTTTTGGGGATGGTTTTGTG
ATACCTTTGGAAGAAAATTGgtaaaataacatatttctTACTTACAATAT
CTGTGTTTTTTGAGATTCCATTTTGTATTCATTGAGTGAGCAGTGAGTTT
AACTTTaatttagacggcccacttttcaccctgcctattctaattgcgaA
TTAAAGTTAGCAGAAAGTTGGTCGTCTAAAGTTTAGACTTCTCtcaatct
tttccaagcaaagatctTAACTgccaaatttgtgcccactttctgcctac
tctaataATTAGAATAGGCGCAGGGCaaaaagtcggccgtctaaactaga
gtaTCAACAGCCACGTTAACCATGCTTTGTTTAGTCTTCTTTATTGTCAG
AGCGAGCGCGAGAAtgagaaattagtttgaaattttcatatttatatAGT
TTAACTCCGTAGCCTTCATATCACTTTTTCTTACAGGCATTGACATTGAG
TGCATCATTGATTCTTGTCTCCTTCCTGTGCAGTTCTTTCGCAATCAACT
ATAATTTTGTGTTGATCTTTATGATTATGGAAGGCTTTTCAGTTGCTGGT
GCTGGCCAATCGTAAGTTGGTTTGTCATAAATGTAAAGTGGAaactcttt
aattcgaacctctccTTAACTgaaacaagttttctcgtcccttttGTTAA
CAATAGCTTATAAACCTTGTTCCATATCTCGAAGATTCCTTAACTCTgac
aaatttgtgtttcccgTGTGTCGGGTATGAAGTAGCGTTTTATCTTGAGC
CGGTGTACTTCGTAGCTAACTTGAGATTGTTGAGCCATGATGAGGATATG
CATCCCTTTGAATCACCAAACTAGTTTGATATAAAATATAGGACGTATAT
TTAATTAGGCGTGCATGTTTCACCATGGAAAAATAATACCGAGGACTTGG
GGTATAATGTCTTCCTTTCTCTAAAACAGATTAATCAccactgtgtcaca
gacccggtgggacacCGTACCACTGGAAAATGTTGCTAAAATCTTGTCCC
CGTGACTTTCctccatttttgttttcatacgtttgaaattcaatggaaaa
aaattgcacattaaaaccatccccactgagcTTCCTGACCTGTTCcctat
ttctattgttttttgaaattcgaaagaaattttcatccctacCATGCGGG
AagaagtttcaccggggctgtgagacaggtgtGTGATTAAGTTGTTCTTT
GTACTTCTACGCCTTATAACAAACTTGTATTTCTTATATTCGACCCTGTG
GCTTTATAGCGGCCTGTGAATCGGAAGAAAATTTATGTATTTACAATAAG
AAGATCAAAAAGGGTTGCTAGATTCAAGCGGAATGCTTAAACAAAAGTTA
GATAGTATTCTCTTTGGTGctcatttgaaatttgaaattcccTTTCTTTT
TGGTGGAATTTTCAAGTTCgtgttttaaaatattattccatttttctaga
ttttctttGTGTTGGGTAATGTGTTATCAGGACTTGTTGCAGTCTTTGTG
ATGAATCAGCACGGATGGAGGTGGTTTGTGAGGATGACCTCTATCCCTAT
CTTCAttctcattctttttttatgggTAAGAAATAGAAAAACCATTTAAC
TTAATGAATATTATTCTACAAATGATTTTCTAAGTACAGACGAAAAACTG
TTTTGCTTTTCCTGTTCTACCTCTATAGTTATCGTAGCATGAAAGTAAAG
TATTCGACTTATATGTGTTTTGAAGGATTTGGATTTAATTCCGAGCTGGG
TTATACTAAAAAGATTTGATCAAAAAACCTTTAGCGCGCAttctaaaaag
atttgaaactcagattttaaaattattgATTATTGACTATTTTACCAATG
ATTTTCCCTTTCAGTGGTTGCCAGAATCGCCAAGATATTTGATCGGTATC
GGAAAACGAGAAGCTGCTGCCAAAGTTTTGTCGAGAATCGCTGATGAAAA
CAACACGCAACTTCCCAACGGGAAATTGAAAATACTGCCTTGTTATGTGA
GCATATAAGAAATTCgcacattttgaaatattaggaACAGCTGTAAGAAG
tgcaaaaagtgcaaaaaatgaACTAGAAGATACGTCGTCAGTAGCCTTTA
CCAAACTCGGTGGTAGAGGTGGGGCAGGCTAGTGGATCAGTATTTTAGTA
ATATTCTATAAACCTCCTTTTAGCAAAGAAAACCGAGGGGTCGTATCATC
GACTTGTTGACAATTGATCAAAGACGGACGACTATCTTGCTCTGGTTTCT
ATGGTAAGATCGGAATACATCTTGAGATAACGATAGTGAAATTAAATCTT
TGAGCTTTGTATGGTATGTGGTAAATTCAACACAtttaagaaaaatagtt
tctatACTAAACCCCAAGTTATATTAAACTTATATTTcttacattgtcca
gagttctTGTGTCATAATAAGATTGCATTCCCGCTTCGATACTTCTATTT
AAACACTGTTGTCCTTAAAATAAAACAGCCTAATAATTCTGTGATTCATT
CCACCAATCAGGTTCAGTGCAGTGTTTTGTTACTACGGTGTATTGTTGTG
TACCACCTTACttcttaaggtggtagtctaccgccagatttcaaaagtca
aaaaatcacattttttgcaataactcaagaacttctttacatttcgtaat
gaaattttcag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030747	XLOC_030747	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_142	supercontig	scaffold_142:667215..672225 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.440872	0.5002	1.03066	2.49323	1.8403	1.57998	2.34576	1.92041	3.71986	1.69499	1.93525	4.48252	4.48912	5.2597	0.353002	0.363147	2.89003	2.73898	2.84525	1.36775	1.41053	1.79829	0.33755	0.252594	0.505319	0.528388

Blast

[Close]

BLAST of TCONS_00048305 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.630e-40
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 3

Query:  156 GKKERSFEKISL-LPANEDDGQIDINNGFYEPQ---YTVNECLEYIGFGWFQVKLTVVLGFSWMADAIAITSLAVLAPALQCDWNLSPEQTALISTCVXXXXXXXXXXXXXXCDTFGRKLALTLSASLILVSFLCSSFAINYNFVLIFMIMEGFSVAGAGQSFSL 638
            G+ E   E + + L A E D    +   F  P    + V + +E IGFG FQ KL+V+ G +WMADA+ +  L++LAP L C+W L   Q AL+++ VF+GM   +  WG   D +GRK  L +S    L   + S+FA  Y+++L+   + GF + G  QS +L
Sbjct:   32 GEHEVQIEGVHVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTL 196

HSP 2 Score: 88.9669 bits (219), Expect = 6.630e-40
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 2

Query:  629 IFFVLGNVLSGLVAVFVMNQHGWRWFVRMTSXXXXXXXXXXXXXXESPRYLIGIGKREAAAKVLSRIADENNTQLPNGKLKILPCYQRKPRGRIIDLLTIDQRRTTILLWFLWFSAVFCYYG 994
            +F+ +G V   ++AVFVM   GWRW + ++++P+ +  +  +WLPES RY +  G +E A   L RIA EN   +P GKL I    +++ RG++ DL T   R TT+LLWF+WFS  F YYG
Sbjct:  215 VFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLII---SRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYG 333

The following BLAST results are available for this feature:

BLAST of TCONS_00048305 vs. Swiss-Prot (Human)

BLAST of TCONS_00048305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SVOP	6.630e-40	36.97	Synaptic vesicle 2-related protein OS=Homo sapiens...	[more]

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TCONS_00048305 (transcript) - C. hemisphaerica