TCONS_00048307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048307
Unique NameTCONS_00048307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048307 ID=TCONS_00048307|Name=TCONS_00048307|organism=Clytia hemisphaerica|type=transcript|length=1783bp
TAACATTGGAATGGGGAAGAAGGAGAGAtctttcgagaaaattagtttgc
TCCCTGCAAATGAAGATGACGGCCAAATAGACATTAACAATGATGGCAGA
CGCAATAGCGATCACATCCTTGGCAGTGCTGGCACCTGCATTACAATGTG
ATTGGAACCTCTCTCCCGAACAAACAGCACTTATATCTACTTGTGTATTT
ATTGGCATGTTTTTCGGTGCCGGCTTTTGGGGATGGTTTTGTGATACCTT
TGGAAGAAAATTGGCATTGACATTGAGTGCATCATTGATTCTTGTCTCCT
TCCTGTGCAGTTCTTTCGCAATCAACTATAATTTTGTGTTGATCTTTATG
ATTATGGAAGGCTTTTCAGTTGCTGGTGCTGGCCAATCattttctttGTG
TTGGGTAATGTGTTATCAGGACTTGTTGCAGTCTTTGTGATGAATCAGCA
CGGATGGAGGTGGTTTGTGAGGATGACCTCTATCCCTATCTTCAttctca
ttctttttttatggTGGTTGCCAGAATCGCCAAGATATTTGATCGGTATC
GGAAAACGAGAAGCTGCTGCCAAAGTTTTGTCGAGAATCGCTGATGAAAA
CAACACGCAACTTCCCAACGGGAAATTGAAAATACTGCCTTGTTATCAAA
GAAAACCGAGGGGTCGTATCATCGACTTGTTGACAATTGATCAAAGACGG
ACGACTATCTTGCTCTGGTTTCTATGGAATGAAACATTTGATTATCAGAA
GAGGAGGTCTGCCAATGACCATAATCCCAGTCAACCACAACACATCATCA
CTGGCCACTTCCAATACCAACGTATCTATCGGTGGACATTGTCATAGAAT
GACCAGCTCTGATTATCTTGGCTTTTTGTTCACTGCTCTTGGTGAAATTC
CAGGTTTGTTGTTATGTTTTGGGTTAGCAGATCGATTAGGTCGACGTCCA
GCATTGTCAGTCTTATGTTTCGTGTCCGTTCTTGCAATGTCGTTGCTCCA
CGCGTGTTTGAATCGATATCTACTTGTTGGCACACTTTTCATCTTGAGAG
CTTTTGTGACAGGCTTCATTCAGACCGTTTATCTTTATACACCAGAGGTT
TACCCGACGAACATTCGTGCAATAGGTTTTGGAACAGCAAGTTCAATGGC
CAGGATAGGAGCCATCATTACTCCCTTTGTGTCCGAGGTTTTGTTGGATA
CATACCCTCACCACGCTATCTTCATTTACTCTGGGTTAATGGCTGTCTGC
ATTTTCGCCTCCTTGCTTCTCCCCATTGAAACCAAGGGGATGAAACTGAA
GGAGTTTGAAGAGGAGAGCGAACCGAACGATAATGGGTGATGGAAGAAAG
AGCAAAGGCGAAATAACTTATCGATGAATGTAGAGGGTAGATGCGATAGA
GGAAGGGACCTAAACTTCGATGCCCTTTGAATTTtcataaatgttgaaaa
ataacctTTTATTAAACGGTGTCAAATTGTGATTTCAATACGATTCGATT
TTCCGCaggtttgaaataaaaatggacAAGGAGAAAGTGACGCTTGCAAA
AAGTTTATTTATTGTTGAATGGGGAAGAAAACTATTAATTAAAATTACAC
GATATAATGAGATTTGTGCTGATGTTTCCTTTGAATCAATCCGGGAAGTT
TAATCCTTGATATTGATCACTGAAATATATATGTCAATTTATGTCTAGGA
AATGAGTGAAATGATGATGAAATATAAAGAcatctttataaaaaaagctt
ggATAGGCTAATTTACAGACCCCTCCCCCAACG
Run BLAST on NCBI

transcript from alignment at scaffold_142:667357..677622+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048307 ID=TCONS_00048307|Name=TCONS_00048307|organism=Clytia hemisphaerica|type=transcript|length=10266bp|location=Sequence derived from alignment at scaffold_142:667357..677622+ (Clytia hemisphaerica)
TAACATTGGAATGGGGAAGAAGGAGAGAtctttcgagaaaattagtttgc
TCCCTGCAAATGAAGATGACGGCCAAATAGACATTAACAATGGTAAGTGT
GATATCTAttacacgttttcttataagaacaaactatataagaacacaag
gcttggatggccaaaatgttaagaaccagtaaagagcattttaaggcttt
gaggactctaaaacactcgaAGGCTTatcaaaatacacaaaaatactcac
aaaataagaacatgttgagaacatctttaggctttaaaactttggatgct
cttataaaaaggtAGGAAAAATTCTCTACAATTTCAGCTGTAATGGAAAC
TTGATTATTTTTCCTCTCCgataaatttaaaattcaatgtggaaaaaaat
tgcactccaaaaccatcccgcacaggatagaaattatatccccattgaga
tttcgaaAGACGTTTCCATCCTCACTGTAGCAAGTAGTTTCaaggggctg
tgagacaggggtgtttgtaGATATAGGACGATATGCTTggcagtggcgtg
gtggcagggggggccaggggggccaGGCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccaaga
aggatttttcaggcgcccatatcgaaagattgacaaatgaaaaaacaaaa
atggcgcccctcatcacctcaaaaactcaaaattttctggctcgctacgc
tcgcacactcccttctttgtgttcataatgagcgtatagagagAGGGgca
ccaaaaacaaaaaatctttaaaaagggcgccatttttgccttggccaccc
cagagaaattttcccaccacgccactgatgCTTGGTATTCACTCAGGATA
ACCTTTCTTGTAGGTTTCTATGAGCCCCAGTACACTGTCAATGAATGTTT
GGAATATATTGGTTTCGGATGGTTTCAAGTGAAGTTGACTGTTGTCCTTG
GCTTCAGCTGGGTAAGATTTATTGCAGTGTTTTATATCGATGCTGCACAG
TTAAACCTCTGAAGTTTAAGTCTGGAAGGCTAGAGAAGTATTGGTTTTTT
AGAGACTATGGAAAGTATTGGCGAGATCATTGACTAccaagcccaaaggg
ctagactcgagactcctggatgggaaaaatgaagcaacttaCTCCCCATT
CTAAGCGCGTGACCAGCATGGGCacacaaacgctggattgaaagtaaaaa
catatcgtcagatttcaaaaaaaaatgccacgtgaaaacaaagaaagtgc
tagattTTATCAAATCAGCTTCACTTCACTTCTTATTGCTCGAGAAAGGC
TGAAGACTTATCCCTTTCGGGGCTTTAATCTGAATGGGTGAGAATATGAG
TAAAATTGTATTGTCCGACAGTCTTCGCATCAATTGATATAAAGCGAAGG
CTAATTCAAAGATTAAAACATatgaaaaaattgacaaaattttcacaatt
tttagaACACGGTCTAAAGCTTTAAGGATGATGAATTTTGTAATGCTTCT
GAAAATActaattttgattggttcttaCATATTTTCAGATGGCAGACGCA
ATAGCGATCACATCCTTGGCAGTGCTGGCACCTGCATTACAATGTGATTG
GAACCTCTCTCCCGAACAAACAGCACTTATATCTACTGTAAGATTTAACG
ATATCGTGCAAGCATTTCTTCGTTATTCGAACATATTTAACGATTATTAA
ACTTTTTAATGCTGTAAAAATCTCAAAGTTACTTTAATTTTAATTACTGA
ATGAGTTAACGGCTTAGTTTTCCAAATTGTAGGTGATaagtttgtttatt
tatgtTTATTGTACCAACCGAATTTGTGAATGTCTTCTTAAATTTCTCTG
TTTCAGTGTGTATTTATTGGCATGTTTTTCGGTGCCGGCTTTTGGGGATG
GTTTTGTGATACCTTTGGAAGAAAATTGgtaaaataacatatttctTACT
TACAATATCTGTGTTTTTTGAGATTCCATTTTGTATTCATTGAGTGAGCA
GTGAGTTTAACTTTaatttagacggcccacttttcaccctgcctattcta
attgcgaATTAAAGTTAGCAGAAAGTTGGTCGTCTAAAGTTTAGACTTCT
CtcaatcttttccaagcaaagatctTAACTgccaaatttgtgcccacttt
ctgcctactctaataATTAGAATAGGCGCAGGGCaaaaagtcggccgtct
aaactagagtaTCAACAGCCACGTTAACCATGCTTTGTTTAGTCTTCTTT
ATTGTCAGAGCGAGCGCGAGAAtgagaaattagtttgaaattttcatatt
tatatAGTTTAACTCCGTAGCCTTCATATCACTTTTTCTTACAGGCATTG
ACATTGAGTGCATCATTGATTCTTGTCTCCTTCCTGTGCAGTTCTTTCGC
AATCAACTATAATTTTGTGTTGATCTTTATGATTATGGAAGGCTTTTCAG
TTGCTGGTGCTGGCCAATCGTAAGTTGGTTTGTCATAAATGTAAAGTGGA
aactctttaattcgaacctctccTTAACTgaaacaagttttctcgtccct
tttGTTAACAATAGCTTATAAACCTTGTTCCATATCTCGAAGATTCCTTA
ACTCTgacaaatttgtgtttcccgTGTGTCGGGTATGAAGTAGCGTTTTA
TCTTGAGCCGGTGTACTTCGTAGCTAACTTGAGATTGTTGAGCCATGATG
AGGATATGCATCCCTTTGAATCACCAAACTAGTTTGATATAAAATATAGG
ACGTATATTTAATTAGGCGTGCATGTTTCACCATGGAAAAATAATACCGA
GGACTTGGGGTATAATGTCTTCCTTTCTCTAAAACAGATTAATCAccact
gtgtcacagacccggtgggacacCGTACCACTGGAAAATGTTGCTAAAAT
CTTGTCCCCGTGACTTTCctccatttttgttttcatacgtttgaaattca
atggaaaaaaattgcacattaaaaccatccccactgagcTTCCTGACCTG
TTCcctatttctattgttttttgaaattcgaaagaaattttcatccctac
CATGCGGGAagaagtttcaccggggctgtgagacaggtgtGTGATTAAGT
TGTTCTTTGTACTTCTACGCCTTATAACAAACTTGTATTTCTTATATTCG
ACCCTGTGGCTTTATAGCGGCCTGTGAATCGGAAGAAAATTTATGTATTT
ACAATAAGAAGATCAAAAAGGGTTGCTAGATTCAAGCGGAATGCTTAAAC
AAAAGTTAGATAGTATTCTCTTTGGTGctcatttgaaatttgaaattccc
TTTCTTTTTGGTGGAATTTTCAAGTTCgtgttttaaaatattattccatt
tttctagattttctttGTGTTGGGTAATGTGTTATCAGGACTTGTTGCAG
TCTTTGTGATGAATCAGCACGGATGGAGGTGGTTTGTGAGGATGACCTCT
ATCCCTATCTTCAttctcattctttttttatgggTAAGAAATAGAAAAAC
CATTTAACTTAATGAATATTATTCTACAAATGATTTTCTAAGTACAGACG
AAAAACTGTTTTGCTTTTCCTGTTCTACCTCTATAGTTATCGTAGCATGA
AAGTAAAGTATTCGACTTATATGTGTTTTGAAGGATTTGGATTTAATTCC
GAGCTGGGTTATACTAAAAAGATTTGATCAAAAAACCTTTAGCGCGCAtt
ctaaaaagatttgaaactcagattttaaaattattgATTATTGACTATTT
TACCAATGATTTTCCCTTTCAGTGGTTGCCAGAATCGCCAAGATATTTGA
TCGGTATCGGAAAACGAGAAGCTGCTGCCAAAGTTTTGTCGAGAATCGCT
GATGAAAACAACACGCAACTTCCCAACGGGAAATTGAAAATACTGCCTTG
TTATGTGAGCATATAAGAAATTCgcacattttgaaatattaggaACAGCT
GTAAGAAGtgcaaaaagtgcaaaaaatgaACTAGAAGATACGTCGTCAGT
AGCCTTTACCAAACTCGGTGGTAGAGGTGGGGCAGGCTAGTGGATCAGTA
TTTTAGTAATATTCTATAAACCTCCTTTTAGCAAAGAAAACCGAGGGGTC
GTATCATCGACTTGTTGACAATTGATCAAAGACGGACGACTATCTTGCTC
TGGTTTCTATGGTAAGATCGGAATACATCTTGAGATAACGATAGTGAAAT
TAAATCTTTGAGCTTTGTATGGTATGTGGTAAATTCAACACAtttaagaa
aaatagtttctatACTAAACCCCAAGTTATATTAAACTTATATTTcttac
attgtccagagttctTGTGTCATAATAAGATTGCATTCCCGCTTCGATAC
TTCTATTTAAACACTGTTGTCCTTAAAATAAAACAGCCTAATAATTCTGT
GATTCATTCCACCAATCAGGTTCAGTGCAGTGTTTTGTTACTACGGTGTA
TTGTTGTGTACCACCTTACttcttaaggtggtagtctaccgccagatttc
aaaagtcaaaaaatcacattttttgcaataactcaagaacttctttacat
ttcgtaatgaaattttcaggaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNcaggagatgttcagaaagacct
aaggatctcaaaacacccaaaaaccaaaattcgacaattttttcgatgat
tttttatttttgggtagactaccaccttaacaAAAGGGAAAAATTGTGCG
ATAGTCATTCACCATTCGATGGTAAGTTCAAaactattccaaaaaaattg
actcCTAAAATTCCTCTTGGATAAAAAAGGATGCTATTAAAAATGACGCT
TTGCTGGATAGATAATTTCCAGtttaagactttttttattaattcctcta
aaattcgaaaatgaagatgaaaagataGTTTAGTGAAGGTTCAATCTCCG
CCATTAGCTTGAGCgttaaaaaaattcttccttATTGGGTTGGAATTTCC
CGAACGGGATAGGCTTGTTTTAACAAAAACGATATTTTTTACCTTAAAAT
GTGTTGTTAAAATGAATTAAGTCCCTGTCGTATTAATGTTCTATAGGCTA
AATTAATTCACGGAATTCCGTGATGAATTATAAACACATCGATGGAAAGA
TCTTACCCCTATCAATACATGGTACTGTTTGTTTTTCAGGAATGAAACAT
TTGATTATCAGAAGAGGAGGTCTGCCAATGACCATAATCCCAGTCAACCA
CAACACATCATCACTGGCCACTTCCAATACCAACGTATCTATCGGTGGAC
ATTGTCATAGAATGACCAGCTCTGATTATCTTGGCTTTTTGTTCACTGCT
CTTGGTGAAATTCCAGGTATGGGATGCTATTGAATCGCAAAAGAAAAGTT
TCTGCACCAAAAGTTTTGGCCTTTGAAGTACTACCAATTATACTCTATAA
GTCGGCAGCAAACGTATTAACTCCTTTTTTTTATCCATTGTGTTATAATA
ATAGATATGATAGATTTAATACAAGTGATTTAATCCACACAGGTTTGTTG
TTATGTTTTGGGTTAGCAGATCGATTAGGTCGACGTCCAGCATTGTCAGT
CTTATGTTTCGTGTCCGTTCTTGCAATGTCGTTGCTCCACGCGTGTTTGA
ATCGGTAagatataaaaaaacttttttttaatttcaaaatcacaTCACGT
TAGACTGACTAGCGTCAGAGGTAGTGAATTGTATCACTTGCAGAGCACCC
Ctaataggcgtagcgagatatcctgcaaaatttatggatgagagcagttt
ttacgacactgtaattactgtctttgttttatcaaaagataatcaATATG
TCATAAaagtctgcactccctcataaattttgcagggtatagCGCTTCGC
CTATGCCCCTTATATATCTTAATGTTGTGCTTGTAAAGGGGGGACAAATT
CTATCGATTAGCTAAAAATCAATTCACCCGAAATCTGCAGGGAATTCGAG
AGGATAGTTTTTTGCCAGTTCTGCACCCTATTAAGAGCAAAATCTTACAA
ATTTTCCCGGATATAAGTGGTGACATACGATAACTTTTTTAAGACCTATT
CGAATTCTGAACgaaattttagtaatttttatTCCAATCGAGATTCGAGA
TTTTCGCCTCGAGCATACCGTCACTTCACGAATCTAGTCTCACCCGGTAG
ATTTAACTGAATGCTTTATTCACGACCTTCTTATTTCATCATCTACAATA
TTTACATTACATCTTCCAGATATCTACTTGTTGGCACACTTTTCATCTTG
AGAGCTTTTGTGACAGGCTTCATTCAGACCGTTTATCTTTATACACCAGA
GGTAGGTAACACCAGTATAATTTCTTAAATTTAGTTGAAAGGCTTTGGAA
TTTTTTAGAAAGGTCCACTGTGTTGAATAAACGTTGTGTATAAGCTAGAT
TTTGACATTTACACTGCAAAACGCAAGATTCATTCTCAGAGTTATTTTTT
TACCAGTATGCGAACTTAAAAACTACCTTACCCGCTGATACGAAAATTAA
CGAAGGAGTTTCAGTAGAGATCTCTCTTTCTTTACGTTCGGAATCTCATA
GCGCCCATTCATCATctcaaagaaaatttctttgctGAATATTGTAAAAA
TGCTGAGAATTCTCTTTAATCTGAAGGGAAAGACCAGTATTTGCTGActc
aaaaaattgaatcaaagcaaaatttaaattttcgtttTAAAATACCTTGT
AATTTAAAAACGCTGATCTCTGCGAAACCAAATCCGGAAGATTTTAGAAA
TTAAATCTCGCGGAAATTAACCCGATTAAAGTTTTGAAGAGTTCCAGTTG
ATCGTAAAGAAATCTACTAAAATTCTCTAAATGGATCAGCAAGGCTGTTC
AAGTTAGAATATTTTCACATCTATTTGACATTTTCAGGTTTACCCGACGA
ACATTCGTGCAATAGGTTTTGGAACAGCAAGTTCAATGGCCAGGATAGGA
GCCATCATTACTCCCTTTGTGTCCGAGGTAAAACCAATTGTCCTATAAAG
TAgtgatgaaaatttcaattgtgTGACTTTTAAAATTTCTGTTTAACTTC
GTTCAAAATTTTTACACTTGGAAGCACGCTTTGTAAATGATCTCAGAGTG
TCTCGTTTCCTAGAGCAATAGATTGAgaaaatagaatcttttgtttgaAG
AGAAATCTTATACCAGGTATTAAAAACCTCATTTAATTCAAGGATTATCG
AAAAAagtcaatttaatttttttgacagaGTATTCAAACACAGCTACCTA
TCTTTGGAGAATTATTTTATAGGGCAGATATCCGCTACCTCCTCATAGCT
ATGGGTCCatagttttatttttcttctatcTTTAAGGTTTTGTTGGATAC
ATACCCTCACCACGCTATCTTCATTTACTCTGGGTTAATGGCTGTCTGCA
TTTTCGCCTCCTTGCTTCTCCCCATTGAAACCAAGGGGATGAAACTGAAG
GTGAGCTTCCGCCTACTTTGCATTGTATTGTTAGGTGGGGNGGGATGAAA
CTGAAGGTGAAACTCTTGTATATTGTAATGTATTGTTAGGTGGGCATTTC
TATCATTGATAATCAtacgttcttttataagaaaaatctatataagaaca
tatgcCCAACATATGTCTTTGAAGGTCAAAATATAAAGAACAAGCTAGGA
GCACTTTTAAGGCTctatggactctaaaacacccaatttcttgaAAGTTA
CACAAAATTCTCACAAAAAGGCGAAAAACAAGAACTAGTTAGGAACATta
ttaagcttaaaactcacaAAGTTATGAGCATCTGAAGGCTTTCAAAATAC
TGGATGCTCTAGATAGTCGAATAGATTGATGATTAGAGCCTTGAAGTATT
TCCTTCCTTCCTAACCAACTTTACTTTCTTACTTGCTCAAAGATTTTCCA
CATACTATCAATCAATGCTGATCGAGCGCGTGAGATAGTCGATTAAATTG
ATGATTGAGCCTTGAAATGTTTCCTTCCTTACTAATTTGTAGTTGCTTTT
CCTTGCTCAAATCAATATCGACTGTGGAGATATGCTTCACGCATACTGTC
AATCAATGCTGATCGAATGTAAGCAAAACGGCTCCTTATCGTTGTTTCCC
CTGATGATTgaaagtattttcttttttctcccaGGAGTTTGAAGAGGAGA
GCGAACCGAACGATAATGGGTGATGGAAGAAAGAGCAAAGGCGAAATAAC
TTATCGATGAATGTAGAGGGTAGATGCGATAGAGGAAGGGACCTAAACTT
CGATGCCCTTTGAATTTtcataaatgttgaaaaataacctTTTATTAAAC
GGTGTCAAATTGTGATTTCAATACGATTCGATTTTCCGCaggtttgaaat
aaaaatggacAAGGAGAAAGTGACGCTTGCAAAAAGTTTATTTATTGTTG
AATGGGGAAGAAAACTATTAATTAAAATTACACGATATAATGAGATTTGT
GCTGATGTTTCCTTTGAATCAATCCGGGAAGTTTAATCCTTGATATTGAT
CACTGAAATATATATGTCAATTTATGTCTAGGAAATGAGTGAAATGATGA
TGAAATATAAAGAcatctttataaaaaaagcttggATAGGCTAATTTACA
GACCCCTCCCCCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030747XLOC_030747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048307-exon-scaffold_142-1491911889:667357..667448TCONS_00048307-exon-scaffold_142-1491911889:667357..667448Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:667357..667448TCONS_00048307-exon-scaffold_142-1510915933:667357..667448Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:667357..667448TCONS_00048307-exon-scaffold_142-1575043694:667357..667448Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:669195..669293TCONS_00048307-exon-scaffold_142-1491911889:669195..669293Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:669195..669293TCONS_00048307-exon-scaffold_142-1510915933:669195..669293Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:669195..669293TCONS_00048307-exon-scaffold_142-1575043694:669195..669293Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:669513..669584TCONS_00048307-exon-scaffold_142-1491911889:669513..669584Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:669513..669584TCONS_00048307-exon-scaffold_142-1510915933:669513..669584Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:669513..669584TCONS_00048307-exon-scaffold_142-1575043694:669513..669584Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:670001..670125TCONS_00048307-exon-scaffold_142-1491911889:670001..670125Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:670001..670125TCONS_00048307-exon-scaffold_142-1510915933:670001..670125Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:670001..670125TCONS_00048307-exon-scaffold_142-1575043694:670001..670125Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:671014..671139TCONS_00048307-exon-scaffold_142-1491911889:671014..671139Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:671014..671139TCONS_00048307-exon-scaffold_142-1510915933:671014..671139Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:671014..671139TCONS_00048307-exon-scaffold_142-1575043694:671014..671139Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:671429..671560TCONS_00048307-exon-scaffold_142-1491911889:671429..671560Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:671429..671560TCONS_00048307-exon-scaffold_142-1510915933:671429..671560Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:671429..671560TCONS_00048307-exon-scaffold_142-1575043694:671429..671560Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:671738..671817TCONS_00048307-exon-scaffold_142-1491911889:671738..671817Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:671738..671817TCONS_00048307-exon-scaffold_142-1510915933:671738..671817Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:671738..671817TCONS_00048307-exon-scaffold_142-1575043694:671738..671817Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:674146..674322TCONS_00048307-exon-scaffold_142-1491911889:674146..674322Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:674146..674322TCONS_00048307-exon-scaffold_142-1510915933:674146..674322Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:674146..674322TCONS_00048307-exon-scaffold_142-1575043694:674146..674322Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:674499..674610TCONS_00048307-exon-scaffold_142-1491911889:674499..674610Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:674499..674610TCONS_00048307-exon-scaffold_142-1510915933:674499..674610Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:674499..674610TCONS_00048307-exon-scaffold_142-1575043694:674499..674610Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:675226..675307TCONS_00048307-exon-scaffold_142-1491911889:675226..675307Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:675226..675307TCONS_00048307-exon-scaffold_142-1510915933:675226..675307Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:675226..675307TCONS_00048307-exon-scaffold_142-1575043694:675226..675307Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:675894..675983TCONS_00048307-exon-scaffold_142-1491911889:675894..675983Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:675894..675983TCONS_00048307-exon-scaffold_142-1510915933:675894..675983Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:675894..675983TCONS_00048307-exon-scaffold_142-1575043694:675894..675983Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:676343..676456TCONS_00048307-exon-scaffold_142-1491911889:676343..676456Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:676343..676456TCONS_00048307-exon-scaffold_142-1510915933:676343..676456Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:676343..676456TCONS_00048307-exon-scaffold_142-1575043694:676343..676456Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1491911889:677141..677622TCONS_00048307-exon-scaffold_142-1491911889:677141..677622Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1510915933:677141..677622TCONS_00048307-exon-scaffold_142-1510915933:677141..677622Clytia hemisphaericaexon
TCONS_00048307-exon-scaffold_142-1575043694:677141..677622TCONS_00048307-exon-scaffold_142-1575043694:677141..677622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:667357..677622 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	6.65834e-06	0	0.314338	0	0.000109108	0.439194	0	0	1.30666	0	0	0	0	0.521962	0	0.15867	0.524138	0.41081	0.252262	0	0	0	0.0393977
Blast
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BLAST of TCONS_00048307 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.393e-62
Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 3 
Query:  840 CHRMTSSDYLGFLFTALGEIPGLLLCFGLADRLGRRPALSVLCFVSVLAMSLL-HACLNRYLLVGTLFILRAFVTGFIQTVYLYTPEVYPTNIRAIGFGTASSMARIGAIITPFVSEVLLDTYPHHAIFIYSGLMAVCIFASLLLPIETKGMKLKE 1304
            C  ++  DY+  L+T L E PG+L+   + DRLGR+  ++ LCFV     SLL   C+ R +L   LFI RAF++G  Q  Y+YTPEVYPT  RA+G GT S MAR+GA+ITPF+++V+L++  +  + +YSG   +   AS  LPIETKG  L+E
Sbjct:  365 CEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMA-LCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519

HSP 2 Score: 77.7962 bits (190), Expect = 5.393e-62
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 2 
Query:  389 IFFVLGNVLSGLVAVFVMNQHGWRWFVRMTSXXXXXXXXXXXXXXESPRYLIGIGKREAAAKVLSRIADENNTQLPNGKLKILPCYQRKPRGRIIDLLTIDQRRTTILLWFLW-NETFDY 745
            +F+ +G V   ++AVFVM   GWRW + ++++P+ +  +  +WLPES RY +  G +E A   L RIA EN   +P GKL I    +++ RG++ DL T   R TT+LLWF+W +  F Y
Sbjct:  215 VFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLII---SRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSY 331

HSP 3 Score: 58.5362 bits (140), Expect = 5.393e-62
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 3 
Query:   99 DAIAITSLAVLAPALQCDWNLSPEQTALISTCVXXXXXXXXXXXXXXCDTFGRKLALTLSASLILVSFLCSSFAINYNFVLIFMIMEGFSVAGAGQSFSL 398
            DA+ +  L++LAP L C+W L   Q AL+++ VF+GM   +  WG   D +GRK  L +S    L   + S+FA  Y+++L+   + GF + G  QS +L
Sbjct:   97 DAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTL 196
The following BLAST results are available for this feature:
BLAST of TCONS_00048307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP5.393e-6246.79Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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