TCONS_00048308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048308
Unique NameTCONS_00048308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048308 ID=TCONS_00048308|Name=TCONS_00048308|organism=Clytia hemisphaerica|type=transcript|length=1192bp
gttcagaaagacctaaggatctcaaaacacccaaaaaccaaaattcgaca
attttttcgatgattttttatttttgggtagactaccaccttaacaAAAG
GGAAAAATTGTGCGATAGTCATTCACCATTCGATGGAATGAAACATTTGA
TTATCAGAAGAGGAGGTCTGCCAATGACCATAATCCCAGTCAACCACAAC
ACATCATCACTGGCCACTTCCAATACCAACGTATCTATCGGTGGACATTG
TCATAGAATGACCAGCTCTGATTATCTTGGCTTTTTGTTCACTGCTCTTG
GTGAAATTCCAGGTTTGTTGTTATGTTTTGGGTTAGCAGATCGATTAGGT
CGACGTCCAGCATTGTCAGTCTTATGTTTCGTGTCCGTTCTTGCAATGTC
GTTGCTCCACGCGTGTTTGAATCGATATCTACTTGTTGGCACACTTTTCA
TCTTGAGAGCTTTTGTGACAGGCTTCATTCAGACCGTTTATCTTTATACA
CCAGAGGTTTACCCGACGAACATTCGTGCAATAGGTTTTGGAACAGCAAG
TTCAATGGCCAGGATAGGAGCCATCATTACTCCCTTTGTGTCCGAGGTTT
TGTTGGATACATACCCTCACCACGCTATCTTCATTTACTCTGGGTTAATG
GCTGTCTGCATTTTCGCCTCCTTGCTTCTCCCCATTGAAACCAAGGGGAT
GAAACTGAAGGAGTTTGAAGAGGAGAGCGAACCGAACGATAATGGGTGAT
GGAAGAAAGAGCAAAGGCGAAATAACTTATCGATGAATGTAGAGGGTAGA
TGCGATAGAGGAAGGGACCTAAACTTCGATGCCCTTTGAATTTtcataaa
tgttgaaaaataacctTTTATTAAACGGTGTCAAATTGTGATTTCAATAC
GATTCGATTTTCCGCaggtttgaaataaaaatggacAAGGAGAAAGTGAC
GCTTGCAAAAAGTTTATTTATTGTTGAATGGGGAAGAAAACTATTAATTA
AAATTACACGATATAATGAGATTTGTGCTGATGTTTCCTTTGAATCAATC
CGGGAAGTTTAATCCTTGATATTGATCACTGAAATATATATGTCAATTTA
TGTCTAGGAAATGAGTGAAATGATGATGAAATATAAAGAcatctttataa
aaaaagcttggATAGGCTAATTTACAGACCCCTCCCCCAACG
Run BLAST on NCBI

transcript from alignment at scaffold_142:673593..677622+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048308 ID=TCONS_00048308|Name=TCONS_00048308|organism=Clytia hemisphaerica|type=transcript|length=4030bp|location=Sequence derived from alignment at scaffold_142:673593..677622+ (Clytia hemisphaerica)
gttcagaaagacctaaggatctcaaaacacccaaaaaccaaaattcgaca
attttttcgatgattttttatttttgggtagactaccaccttaacaAAAG
GGAAAAATTGTGCGATAGTCATTCACCATTCGATGGTAAGTTCAAaacta
ttccaaaaaaattgactcCTAAAATTCCTCTTGGATAAAAAAGGATGCTA
TTAAAAATGACGCTTTGCTGGATAGATAATTTCCAGtttaagactttttt
tattaattcctctaaaattcgaaaatgaagatgaaaagataGTTTAGTGA
AGGTTCAATCTCCGCCATTAGCTTGAGCgttaaaaaaattcttccttATT
GGGTTGGAATTTCCCGAACGGGATAGGCTTGTTTTAACAAAAACGATATT
TTTTACCTTAAAATGTGTTGTTAAAATGAATTAAGTCCCTGTCGTATTAA
TGTTCTATAGGCTAAATTAATTCACGGAATTCCGTGATGAATTATAAACA
CATCGATGGAAAGATCTTACCCCTATCAATACATGGTACTGTTTGTTTTT
CAGGAATGAAACATTTGATTATCAGAAGAGGAGGTCTGCCAATGACCATA
ATCCCAGTCAACCACAACACATCATCACTGGCCACTTCCAATACCAACGT
ATCTATCGGTGGACATTGTCATAGAATGACCAGCTCTGATTATCTTGGCT
TTTTGTTCACTGCTCTTGGTGAAATTCCAGGTATGGGATGCTATTGAATC
GCAAAAGAAAAGTTTCTGCACCAAAAGTTTTGGCCTTTGAAGTACTACCA
ATTATACTCTATAAGTCGGCAGCAAACGTATTAACTCCTTTTTTTTATCC
ATTGTGTTATAATAATAGATATGATAGATTTAATACAAGTGATTTAATCC
ACACAGGTTTGTTGTTATGTTTTGGGTTAGCAGATCGATTAGGTCGACGT
CCAGCATTGTCAGTCTTATGTTTCGTGTCCGTTCTTGCAATGTCGTTGCT
CCACGCGTGTTTGAATCGGTAagatataaaaaaacttttttttaatttca
aaatcacaTCACGTTAGACTGACTAGCGTCAGAGGTAGTGAATTGTATCA
CTTGCAGAGCACCCCtaataggcgtagcgagatatcctgcaaaatttatg
gatgagagcagtttttacgacactgtaattactgtctttgttttatcaaa
agataatcaATATGTCATAAaagtctgcactccctcataaattttgcagg
gtatagCGCTTCGCCTATGCCCCTTATATATCTTAATGTTGTGCTTGTAA
AGGGGGGACAAATTCTATCGATTAGCTAAAAATCAATTCACCCGAAATCT
GCAGGGAATTCGAGAGGATAGTTTTTTGCCAGTTCTGCACCCTATTAAGA
GCAAAATCTTACAAATTTTCCCGGATATAAGTGGTGACATACGATAACTT
TTTTAAGACCTATTCGAATTCTGAACgaaattttagtaatttttatTCCA
ATCGAGATTCGAGATTTTCGCCTCGAGCATACCGTCACTTCACGAATCTA
GTCTCACCCGGTAGATTTAACTGAATGCTTTATTCACGACCTTCTTATTT
CATCATCTACAATATTTACATTACATCTTCCAGATATCTACTTGTTGGCA
CACTTTTCATCTTGAGAGCTTTTGTGACAGGCTTCATTCAGACCGTTTAT
CTTTATACACCAGAGGTAGGTAACACCAGTATAATTTCTTAAATTTAGTT
GAAAGGCTTTGGAATTTTTTAGAAAGGTCCACTGTGTTGAATAAACGTTG
TGTATAAGCTAGATTTTGACATTTACACTGCAAAACGCAAGATTCATTCT
CAGAGTTATTTTTTTACCAGTATGCGAACTTAAAAACTACCTTACCCGCT
GATACGAAAATTAACGAAGGAGTTTCAGTAGAGATCTCTCTTTCTTTACG
TTCGGAATCTCATAGCGCCCATTCATCATctcaaagaaaatttctttgct
GAATATTGTAAAAATGCTGAGAATTCTCTTTAATCTGAAGGGAAAGACCA
GTATTTGCTGActcaaaaaattgaatcaaagcaaaatttaaattttcgtt
tTAAAATACCTTGTAATTTAAAAACGCTGATCTCTGCGAAACCAAATCCG
GAAGATTTTAGAAATTAAATCTCGCGGAAATTAACCCGATTAAAGTTTTG
AAGAGTTCCAGTTGATCGTAAAGAAATCTACTAAAATTCTCTAAATGGAT
CAGCAAGGCTGTTCAAGTTAGAATATTTTCACATCTATTTGACATTTTCA
GGTTTACCCGACGAACATTCGTGCAATAGGTTTTGGAACAGCAAGTTCAA
TGGCCAGGATAGGAGCCATCATTACTCCCTTTGTGTCCGAGGTAAAACCA
ATTGTCCTATAAAGTAgtgatgaaaatttcaattgtgTGACTTTTAAAAT
TTCTGTTTAACTTCGTTCAAAATTTTTACACTTGGAAGCACGCTTTGTAA
ATGATCTCAGAGTGTCTCGTTTCCTAGAGCAATAGATTGAgaaaatagaa
tcttttgtttgaAGAGAAATCTTATACCAGGTATTAAAAACCTCATTTAA
TTCAAGGATTATCGAAAAAagtcaatttaatttttttgacagaGTATTCA
AACACAGCTACCTATCTTTGGAGAATTATTTTATAGGGCAGATATCCGCT
ACCTCCTCATAGCTATGGGTCCatagttttatttttcttctatcTTTAAG
GTTTTGTTGGATACATACCCTCACCACGCTATCTTCATTTACTCTGGGTT
AATGGCTGTCTGCATTTTCGCCTCCTTGCTTCTCCCCATTGAAACCAAGG
GGATGAAACTGAAGGTGAGCTTCCGCCTACTTTGCATTGTATTGTTAGGT
GGGGNGGGATGAAACTGAAGGTGAAACTCTTGTATATTGTAATGTATTGT
TAGGTGGGCATTTCTATCATTGATAATCAtacgttcttttataagaaaaa
tctatataagaacatatgcCCAACATATGTCTTTGAAGGTCAAAATATAA
AGAACAAGCTAGGAGCACTTTTAAGGCTctatggactctaaaacacccaa
tttcttgaAAGTTACACAAAATTCTCACAAAAAGGCGAAAAACAAGAACT
AGTTAGGAACATtattaagcttaaaactcacaAAGTTATGAGCATCTGAA
GGCTTTCAAAATACTGGATGCTCTAGATAGTCGAATAGATTGATGATTAG
AGCCTTGAAGTATTTCCTTCCTTCCTAACCAACTTTACTTTCTTACTTGC
TCAAAGATTTTCCACATACTATCAATCAATGCTGATCGAGCGCGTGAGAT
AGTCGATTAAATTGATGATTGAGCCTTGAAATGTTTCCTTCCTTACTAAT
TTGTAGTTGCTTTTCCTTGCTCAAATCAATATCGACTGTGGAGATATGCT
TCACGCATACTGTCAATCAATGCTGATCGAATGTAAGCAAAACGGCTCCT
TATCGTTGTTTCCCCTGATGATTgaaagtattttcttttttctcccaGGA
GTTTGAAGAGGAGAGCGAACCGAACGATAATGGGTGATGGAAGAAAGAGC
AAAGGCGAAATAACTTATCGATGAATGTAGAGGGTAGATGCGATAGAGGA
AGGGACCTAAACTTCGATGCCCTTTGAATTTtcataaatgttgaaaaata
acctTTTATTAAACGGTGTCAAATTGTGATTTCAATACGATTCGATTTTC
CGCaggtttgaaataaaaatggacAAGGAGAAAGTGACGCTTGCAAAAAG
TTTATTTATTGTTGAATGGGGAAGAAAACTATTAATTAAAATTACACGAT
ATAATGAGATTTGTGCTGATGTTTCCTTTGAATCAATCCGGGAAGTTTAA
TCCTTGATATTGATCACTGAAATATATATGTCAATTTATGTCTAGGAAAT
GAGTGAAATGATGATGAAATATAAAGAcatctttataaaaaaagcttggA
TAGGCTAATTTACAGACCCCTCCCCCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030747XLOC_030747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048308-exon-scaffold_142-1491911889:673593..673727TCONS_00048308-exon-scaffold_142-1491911889:673593..673727Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:673593..673727TCONS_00048308-exon-scaffold_142-1510915933:673593..673727Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:673593..673727TCONS_00048308-exon-scaffold_142-1575043694:673593..673727Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:674146..674322TCONS_00048308-exon-scaffold_142-1491911889:674146..674322Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:674146..674322TCONS_00048308-exon-scaffold_142-1510915933:674146..674322Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:674146..674322TCONS_00048308-exon-scaffold_142-1575043694:674146..674322Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:674499..674610TCONS_00048308-exon-scaffold_142-1491911889:674499..674610Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:674499..674610TCONS_00048308-exon-scaffold_142-1510915933:674499..674610Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:674499..674610TCONS_00048308-exon-scaffold_142-1575043694:674499..674610Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:675226..675307TCONS_00048308-exon-scaffold_142-1491911889:675226..675307Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:675226..675307TCONS_00048308-exon-scaffold_142-1510915933:675226..675307Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:675226..675307TCONS_00048308-exon-scaffold_142-1575043694:675226..675307Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:675894..675983TCONS_00048308-exon-scaffold_142-1491911889:675894..675983Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:675894..675983TCONS_00048308-exon-scaffold_142-1510915933:675894..675983Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:675894..675983TCONS_00048308-exon-scaffold_142-1575043694:675894..675983Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:676343..676456TCONS_00048308-exon-scaffold_142-1491911889:676343..676456Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:676343..676456TCONS_00048308-exon-scaffold_142-1510915933:676343..676456Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:676343..676456TCONS_00048308-exon-scaffold_142-1575043694:676343..676456Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1491911889:677141..677622TCONS_00048308-exon-scaffold_142-1491911889:677141..677622Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1510915933:677141..677622TCONS_00048308-exon-scaffold_142-1510915933:677141..677622Clytia hemisphaericaexon
TCONS_00048308-exon-scaffold_142-1575043694:677141..677622TCONS_00048308-exon-scaffold_142-1575043694:677141..677622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:673593..677622 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0362477	0.14133	0	0	0.633639	0.269224	1.99911	1.87772	1.98329	1.24745	2.42672	1.94417	2.79516	1.84623	1.7138	3.74599	4.31644	4.19065	0.269367	0.161753	1.99248	2.9778	1.33564	0.968044	1.84505	2.08423	0.625689	0.300098	0.248656	0.401407
Blast
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BLAST of TCONS_00048308 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.320e-37
Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 3 
Query:  249 CHRMTSSDYLGFLFTALGEIPGLLLCFGLADRLGRRPALSVLCFVSVLAMSLL-HACLNRYLLVGTLFILRAFVTGFIQTVYLYTPEVYPTNIRAIGFGTASSMARIGAIITPFVSEVLLDTYPHHAIFIYSGLMAVCIFASLLLPIETKGMKLKE 713
            C  ++  DY+  L+T L E PG+L+   + DRLGR+  ++ LCFV     SLL   C+ R +L   LFI RAF++G  Q  Y+YTPEVYPT  RA+G GT S MAR+GA+ITPF+++V+L++  +  + +YSG   +   AS  LPIETKG  L+E
Sbjct:  365 CEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMA-LCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519
The following BLAST results are available for this feature:
BLAST of TCONS_00048308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP1.320e-3746.79Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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