TCONS_00048309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048309
Unique NameTCONS_00048309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048309 ID=TCONS_00048309|Name=TCONS_00048309|organism=Clytia hemisphaerica|type=transcript|length=1463bp
GGATTATTGCGCTAATTGTGTTTTAGATGGGGAGTATCGAATGAAACTTA
ACTTTTCATATCTTAGAAGAGTAAATTATAAACATCATCTCCAAGATTCA
AAATGGCGGCTTGGGACTATTCTTCAAAGAACGGACAACACAAATGGGGC
GTACATTGTAAGATTGGAACGCGCCAATCACCGATAGATATTGTCCATAA
AGACACAACATTTGATGACCAATTGAACATCAATCCACTGGATGTGAATC
AGGAGGTTGGATGTTCGTTCACTGTATTGAATAAAGGAGTCAATATTTCT
TTCTCACCGAAAGAAGTGAATGGTGAAGCCAAAATTTCCGGAGGACCTTT
GGCTTCCATATATCGTTTCAAAGAATGTCATTTTCACTGGGGTCGCAACG
CAACACCGGGATCAGAACATCTCATTAATGGTGACCGCTCCGAGGCTGAG
CTTCACTTGGTACAtttcaaagaagaagaagaaaacccGCTGGAGTCTGG
GAACGGGTTGTCTGTTCTCGGGATCCGATTGGTCGTAAGCGACCAAACAA
ATCccgaattgaaaaaattgttgaAGCTTTTCAAAGATGCCACTTTTAAA
GGTGATCAAAAGGAAAGTGGAGACGTGATCaagatttatcaaattttgag
tGATATTCGTGGAAAGTTTTATACCTATGATGGCTCCTTGACAACCCCTC
CACTTGCTGAGTGCGTCAAATGGATTGTTTTTAGCGAGCCCGTTACAATC
TCAAGAgaagattttgatatttcattcgCTGCTGTCTACGCCGTAAATCG
GGGAGAAGAATCGAATGAATATTATGATCCGTTTACCCGATCGGATTGTT
GTACGTGTGGAGAGAAACCAAAAATCGGGGATAATTATCGAGATATTTGT
GATTTGAATGGGCGAAAGGTTACACGATCGTTCAAATGATAATACTGTAA
AATTATTAATCTAATCTACGCTAGTgtcgaaaatattttattgaatgTTT
TGTAAATTCAGAATTGAATATCGGATTTTTTTTACTACAAGACCAGGGGT
GTGACATTGTAAATAGAATGGGTTAAATACACAATTTTACCTTATTATTG
ATATCAATGATAAACATGCAAATACACGctattttcttttataagaataa
cttctataggAATACcagggtgagatttcagagttagaaaaaaaggccta
ttgtttagaactagccatagctttcactaactgccacccgctacaaATGC
TTATTACGACTAAATGCTgattaaagctttttaatgctttatagtgaaag
tttcgaaaattattaggaacaagaatcgcaaaattgcgacgaaatatttc
cttaaaaatgaaggtcattatcgACATATattagcaagtagctgtcgcta
agaatgccccgcagagcttcctatcgaaatatccctaagtaagcaaaatt
acgcatgtgtaga
Run BLAST on NCBI

protein sequence of TCONS_00048309-protein

>TCONS_00048309-protein ID=TCONS_00048309-protein|Name=TCONS_00048309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MAAWDYSSKNGQHKWGVHCKIGTRQSPIDIVHKDTTFDDQLNINPLDVNQ
EVGCSFTVLNKGVNISFSPKEVNGEAKISGGPLASIYRFKECHFHWGRNA
TPGSEHLINGDRSEAELHLVHFKEEEENPLESGNGLSVLGIRLVVSDQTN
PELKKLLKLFKDATFKGDQKESGDVIKIYQILSDIRGKFYTYDGSLTTPP
LAECVKWIVFSEPVTISREDFDISFAAVYAVNRGEESNEYYDPFTRSDCC
TCGEKPKIGDNYRDICDLNGRKVTRSFK
Run BLAST on NCBI

transcript from alignment at scaffold_142:681922..684025+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048309 ID=TCONS_00048309|Name=TCONS_00048309|organism=Clytia hemisphaerica|type=transcript|length=2104bp|location=Sequence derived from alignment at scaffold_142:681922..684025+ (Clytia hemisphaerica)
GGATTATTGCGCTAATTGTGTTTTAGATGGGGAGTATCGAATGAAACTTA
ACTTTTCATATCTTAGAAGAGTAAATTATAAACATCATCTCCAAGATTCA
AAATGGCGGCTTGGGACTATTCTTCAAAGAACGGACAACACAAATGGGGC
GTACATTGTAAGATTGGAACGCGCCAATCACCGATAGATATTGTCCATAA
AGACACAACATTTGATGACCAATTGAACATCAATCCACTGGATGTGAATC
AGGAGGTTGGATGTTCGTTCACTGTATTGAATAAAGGAGTCAATATTTCT
TTCTCACCGAAAGAAGTGAATGGTGAAGCCAAAATTTCCGGAGGTAAGAA
AGCGAAGACCATGAACCGTGAGAATAACTTACATACAGCGAATTTTGTAG
CTTTGTGAACTTTGAATTAACTTTATTTGACAAGGTCAACTGTCAACGCA
AAATAAATCACCTATGTTTGCAAAACAACAAACTTTAACCTTTAAATTGT
TATGAATACTGAATATCAATGTTTGTTACATATAATAACGTTTCAAACTG
AAATGAATTGCTGCAAGTAATGTCCGGTGACCGTCAATTACCggtcattt
tgtagtttctacAGGCCATTCTTAACTTACCTTTTCTCtttgtccggtta
aaatttgaaagcaAGGCTTCTTTCGTAATTTTAATCAAGTTAATTACCTT
TCTTTAGTTCCTCATACTTaccaaattataaaaatctAAGGGTCACTTTG
GACTCCAAAGTTTTCTAATGGCACCCTAAGACCCCCTGATCAAGTAATTT
TCACTACGTTCGCAAAATTACCGGCCAACATAAATTttcttatttgcagc
actgaaatgaatttaagtatCTATTTTTAGGGAATCACGTCGCAAATGTG
TTTTAATAGAATACATGCTGTATTTTCCCAGTTATACCATTTTCATTGAT
TGggaattatatttttaacaaaatgaTTTTTCAGGACCTTTGGCTTCCAT
ATATCGTTTCAAAGAATGTCATTTTCACTGGGGTCGCAACGCAACACCGG
GATCAGAACATCTCATTAATGGTGACCGCTCCGAGGCTGAGCTTCACTTG
GTACAtttcaaagaagaagaagaaaacccGCTGGAGTCTGGGAACGGGTT
GTCTGTTCTCGGGATCCGATTGGTCGTAAGCGACCAAACAAATCccgaat
tgaaaaaattgttgaAGCTTTTCAAAGATGCCACTTTTAAAGGTGATCAA
AAGGAAAGTGGAGACGTGATCaagatttatcaaattttgagtGATATTCG
TGGAAAGTTTTATACCTATGATGGCTCCTTGACAACCCCTCCACTTGCTG
AGTGCGTCAAATGGATTGTTTTTAGCGAGCCCGTTACAATCTCAAGAgaa
gattttgatatttcattcgCTGCTGTCTACGCCGTAAATCGGGGAGAAGA
ATCGAATGAATATTATGATCCGTTTACCCGATCGGATTGTTGTACGTGTG
GAGAGAAACCAAAAATCGGGGATAATTATCGAGATATTTGTGATTTGAAT
GGGCGAAAGGTTACACGATCGTTCAAATGATAATACTGTAAAATTATTAA
TCTAATCTACGCTAGTgtcgaaaatattttattgaatgTTTTGTAAATTC
AGAATTGAATATCGGATTTTTTTTACTACAAGACCAGGGGTGTGACATTG
TAAATAGAATGGGTTAAATACACAATTTTACCTTATTATTGATATCAATG
ATAAACATGCAAATACACGctattttcttttataagaataacttctatag
gAATACcagggtgagatttcagagttagaaaaaaaggcctattgtttaga
actagccatagctttcactaactgccacccgctacaaATGCTTATTACGA
CTAAATGCTgattaaagctttttaatgctttatagtgaaagtttcgaaaa
ttattaggaacaagaatcgcaaaattgcgacgaaatatttccttaaaaat
gaaggtcattatcgACATATattagcaagtagctgtcgctaagaatgccc
cgcagagcttcctatcgaaatatccctaagtaagcaaaattacgcatgtg
taga

Coding sequence (CDS) from alignment at scaffold_142:681922..684025+

>TCONS_00048309 ID=TCONS_00048309|Name=TCONS_00048309|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_142:681922..684025+ (Clytia hemisphaerica)
ATGGCGGCTTGGGACTATTCTTCAAAGAACGGACAACACAAATGGGGCGT
ACATTGTAAGATTGGAACGCGCCAATCACCGATAGATATTGTCCATAAAG
ACACAACATTTGATGACCAATTGAACATCAATCCACTGGATGTGAATCAG
GAGGTTGGATGTTCGTTCACTGTATTGAATAAAGGAGTCAATATTTCTTT
CTCACCGAAAGAAGTGAATGGTGAAGCCAAAATTTCCGGAGGACCTTTGG
CTTCCATATATCGTTTCAAAGAATGTCATTTTCACTGGGGTCGCAACGCA
ACACCGGGATCAGAACATCTCATTAATGGTGACCGCTCCGAGGCTGAGCT
TCACTTGGTACAtttcaaagaagaagaagaaaacccGCTGGAGTCTGGGA
ACGGGTTGTCTGTTCTCGGGATCCGATTGGTCGTAAGCGACCAAACAAAT
CccgaattgaaaaaattgttgaAGCTTTTCAAAGATGCCACTTTTAAAGG
TGATCAAAAGGAAAGTGGAGACGTGATCaagatttatcaaattttgagtG
ATATTCGTGGAAAGTTTTATACCTATGATGGCTCCTTGACAACCCCTCCA
CTTGCTGAGTGCGTCAAATGGATTGTTTTTAGCGAGCCCGTTACAATCTC
AAGAgaagattttgatatttcattcgCTGCTGTCTACGCCGTAAATCGGG
GAGAAGAATCGAATGAATATTATGATCCGTTTACCCGATCGGATTGTTGT
ACGTGTGGAGAGAAACCAAAAATCGGGGATAATTATCGAGATATTTGTGA
TTTGAATGGGCGAAAGGTTACACGATCGTTCAAATGAATGGCGGCTTGGG
ACTATTCTTCAAAGAACGGACAACACAAATGGGGCGTACATTGTAAGATT
GGAACGCGCCAATCACCGATAGATATTGTCCATAAAGACACAACATTTGA
TGACCAATTGAACATCAATCCACTGGATGTGAATCAGGAGGTTGGATGTT
CGTTCACTGTATTGAATAAAGGAGTCAATATTTCTTTCTCACCGAAAGAA
GTGAATGGTGAAGCCAAAATTTCCGGAGGACCTTTGGCTTCCATATATCG
TTTCAAAGAATGTCATTTTCACTGGGGTCGCAACGCAACACCGGGATCAG
AACATCTCATTAATGGTGACCGCTCCGAGGCTGAGCTTCACTTGGTACAt
ttcaaagaagaagaagaaaacccGCTGGAGTCTGGGAACGGGTTGTCTGT
TCTCGGGATCCGATTGGTCGTAAGCGACCAAACAAATCccgaattgaaaa
aattgttgaAGCTTTTCAAAGATGCCACTTTTAAAGGTGATCAAAAGGAA
AGTGGAGACGTGATCaagatttatcaaattttgagtGATATTCGTGGAAA
GTTTTATACCTATGATGGCTCCTTGACAACCCCTCCACTTGCTGAGTGCG
TCAAATGGATTGTTTTTAGCGAGCCCGTTACAATCTCAAGAgaagatttt
gatatttcattcgCTGCTGTCTACGCCGTAAATCGGGGAGAAGAATCGAA
TGAATATTATGATCCGTTTACCCGATCGGATTGTTGTACGTGTGGAGAGA
AACCAAAAATCGGGGATAATTATCGAGATATTTGTGATTTGAATGGGCGA
AAGGTTACACGATCGTTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030748XLOC_030748Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048309-proteinTCONS_00048309-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048309-exon-scaffold_142-1491911889:681922..682264TCONS_00048309-exon-scaffold_142-1491911889:681922..682264Clytia hemisphaericaexon
TCONS_00048309-exon-scaffold_142-1510915933:681922..682264TCONS_00048309-exon-scaffold_142-1510915933:681922..682264Clytia hemisphaericaexon
TCONS_00048309-exon-scaffold_142-1575043694:681922..682264TCONS_00048309-exon-scaffold_142-1575043694:681922..682264Clytia hemisphaericaexon
TCONS_00048309-exon-scaffold_142-1491911889:682906..684025TCONS_00048309-exon-scaffold_142-1491911889:682906..684025Clytia hemisphaericaexon
TCONS_00048309-exon-scaffold_142-1510915933:682906..684025TCONS_00048309-exon-scaffold_142-1510915933:682906..684025Clytia hemisphaericaexon
TCONS_00048309-exon-scaffold_142-1575043694:682906..684025TCONS_00048309-exon-scaffold_142-1575043694:682906..684025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:681922..684025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.42683	0.196718	0.667748	0.213127	2.45394	1.96304	2.37228	1.92906	4.17542	5.35355	15.755	1.3733	13.7123	12.1151	8.64453	6.60438	7.73121	2.98453	36.6864	60.4075	18.0794	15.4393	20.7051	29.0601	19.6697	20.1285	422.416	339.857	20.0304	17.8443
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001148Carbonic_anhydrase_a
Blast
[Close]
BLAST of TCONS_00048309 vs. Swiss-Prot (Human)
Match: CAH2 (Carbonic anhydrase 2 OS=Homo sapiens GN=CA2 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.595e-34
Identity = 94/286 (32.87%), Postives = 130/286 (45.45%), Query Frame = 1 
Query:  112 WDYSSKNGQHKWGVHCKI--GTRQSPIDIVHKDTTFDDQLNINPLDVNQEVGCSFTVLNKGVNISFSPKEVNGEAKISGGPLASIYRFKECHFHWGRNATPGSEHLINGDRSEAELHLVHFKEEEEN---PLESGNGLSVLGIRLVVSDQTNPELKKLLKLFKDATFKGDQKESGDVIKIYQILSDIRG------KFYTYDGSLTTPPLAECVKWIVFSEPVTISREDFDISFAAVYAVNRGEESNEYYDPFTRSDCCTCGEKPKIGDNYRDICDLNGRKVTRSFK 936
            W Y   NG   W     I  G RQSP+DI      +D  L   PL V+ +   S  +LN G   +    +   +A + GGPL   YR  + HFHWG     GSEH ++  +  AELHLVH+  +  +    ++  +GL+VLGI L V     P L+K++ +      KG   +S D         D RG       ++TY GSLTTPPL ECV WIV  EP+++S E   + F  +     GE                      + DN+R    L  R++  SFK
Sbjct:    5 WGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLK--PLSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNTKYGDFGKAVQQPDGLAVLGIFLKVG-SAKPGLQKVVDVLDSIKTKG---KSADFTNF-----DPRGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQV-LKFRKLNFNGEGEPEE------------------LMVDNWRPAQPLKNRQIKASFK 260
The following BLAST results are available for this feature:
BLAST of TCONS_00048309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAH23.595e-3432.87Carbonic anhydrase 2 OS=Homo sapiens GN=CA2 PE=1 S... [more]
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