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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048310 ID=TCONS_00048310|Name=TCONS_00048310|organism=Clytia hemisphaerica|type=transcript|length=1693bp
TTCAGAAAGGAAATTTTACATttgattctcaaaaatatatttcaaaataa
acttcaagtgtaaattaaaagatttcaaagtatAGAGTTTTCAAGTGGTT
ATTGGTTCATACACCTCAGCCAAGATCTTCTCGCTTAAAGTGCAGTGAAA
GACTACCAATCTGATTTGTCGATTGGACCAATGCCGAGTTCTTTTCAAAC
TACTCGTTCATCAATTTTCAACATCAAGCCATTCAAAGAAGTATTAGCGG
CTTCAAAAGTTTGTTCAAGCTCATTCTCTTCCTGTAGGGAAGTCACTTTG
AAATTCTTTACCAGATAAAACAAAGCGATACGTAACTCCATCATTGCGAA
ACGTTGTCCGACACAATTTCGTGGTCCGGCCGAAAAAGGGATAAACATAA
ATGCCTTTTCTTTCTTCCTTTCATCGAAATTTTCAAATCGCTCTGGTATG
AACGACATCGGATCTTTCCAATACTTTGGGTTATGATTGACGATTCTTAA
ATCAATGCTGAGCCAGCATTCTGGGAACACGTGTCCAGCAAGGACAGTCC
CTTCTTTTATATCACGCTGGAACGCATTCACAGTGACGTGAAGTCTCATC
GTTTCCTTAATGACCATATCCAGATACTTCAATTCTTTCAAATCTGAAAG
TTCCAGAttcccttttttttcaaatgaagtGATTTCATCGAACAGCTTTT
TCTGAGCTTTTTGGTTTCGTCCAAGACAATAGAGAACGAAACTTAAAGCA
GAAGCTGTCGTTTCGTACCCGGCAAATAACATTCCACCAATTTCATCAAT
AATCCCTTCAACGTCGATCTCACCTCGCTCATAACAATCTAAAAGAATAT
CAATGAAAATTTTCTGCTTGGTTTCCACTTCGGTGCATTTCTCCCGATAC
GTAATCCTCTCTTCGATGATTTCTCGAACCATACACCGTAAGATATCTCG
TTGTCTTATGAAAAGTCGGCCATCGGCCGTTAAGGAATAAAACCAATCAT
TGTATAACCAAGGTCTGTAGAATCGCTTCATCATAAGTTCAGTTCCCTGC
TCAAACAAACATTTCAATTCCTCTTTTTCCACACCATCTCCAAAAGTAAT
ATGTTTACCCATAGATGTCTCACAAATGACGGCAATCGCAAAACTCTTTG
CAATTTCATAAACATTGAACTCTGATTGgctctttgaaaattttcgaaaa
acgtTGATCATTTGGCTGACGTTCTTTTCAACGATGGGTGCAAAACCagc
caaaatatcaaaatggaaAGCTGGCGTCAGCATACGTCGTCTCTGCTTCC
ACAAAACGCCATCAGATGCAAAAACGCCATTCCCAACCAGTGCTTTAAGC
ATAGAATACAATAAAGGCGCTTTGGTGATATATTTGGGACTGCTCAGATA
AGCTTCGATGACTTCCAAATTTGACGTCACTACAATCTTATTGGTCAATA
GGTAGAAGGCGAAGGTCCCATTATACTCTTTATGCCATTGATCACAAAGC
TTTCGAAATTTCTTCTGATTGATTAGGAGAGGTATGTGGCCAATCAGTGG
CCAGTCGCCAGGGGCAACGGGAATGGTATCACTCCCTTCTCGAGTGAAAT
GTTTCCACCATATGACAAGTAGGATGAACCCACCAAACACTAAAGTGATT
AACCACCAAGTCAAACCCATTATTTTGTAGAATGTCTTgtctt Run BLAST on NCBI transcript from alignment at scaffold_142:697760..699513+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048310 ID=TCONS_00048310|Name=TCONS_00048310|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at scaffold_142:697760..699513+ (Clytia hemisphaerica)
TTCAGAAAGGAAATTTTACATttgattctcaaaaatatatttcaaaataa
acttcaagtgtaaattaaaagatttcaaagtatAGAGTTTTCAAGTGGTT
ATTGGTTCATACACCTCAGCCAAGATCTTCTCGCTTAAAGTGCAGTGAAA
GACTACCAATCTGATTTGTCGATTGGACCAATGCCGAGTTCTTTTCAAAC
TACTCGTTCATCAATTTTCAACATCAAGCCATTCAAAGAAGTATTAGCGG
CTTCAAAAGTTTGTTCAAGCTCATTCTCTTCCTGTAGGGAAGTCACTTTG
AAATTCTTTACCAGATAAAACAAAGCGATACGTAACTCCATCATTGCGAA
ACGTTGTCCGACACAATTTCGTGGTCCGGCCGAAAAAGGGATAAACATAA
ATGCCTTTTCTTTCTTCCTTTCATCGAAATTTTCAAATCGCTCTGGTATG
AACGACATCGGATCTTTCCAATACTTTGGGTTATGATTGACGATTCTTAA
ATCAATGCTGAGCCAGCATTCTGGGAACACGTGTCCAGCAAGGACAGTCC
CTTCTTTTATATCACGCTGGAACGCATTCACAGTGACGTGAAGTCTCATC
GTTTCCTTAATGACCATATCCAGATACTTCAATTCTTTCAAATCTGAAAG
TTCCAGAttcccttttttttcaaatgaagtGATTTCATCGAACAGCTTTT
TCTGAGCTTTTTGGTTTCGTCCAAGACAATAGAGAACGAAACTTAAAGCA
GAAGCTGTCGTTTCGTACCCGGCAAATAACATTCCACCAATTTCATCAAT
AATCCCTTCAACGTCGATCTCACCTCGCTCATAACAATCTAAAAGAATAT
CAATGAAAATTTTCTGCTTGGTTTCCACTTCGGTGCATTTCTCCCGATAC
GTAATCCTCTCTTCGATGATTTCTCGAACCATACACCGTAAGATATCTCG
TTGTCTTATGAAAAGTCGGCCATCGGCCGTTAAGGAATAAAACCAATCAT
TGTATAACCAAGGTCTGTAGAATCGCTTCATCATAAGTTCAGTTCCCTGC
TCAAACAAACATTTCAATTCCTCTTTTTCCACACCATCTCCAAAAGTAAT
ATGTTTACCCATAGATGTCTCACAAATGACGGCAATCGCAAAACTCTTTG
CAATTTCATAAACATTGAACTCTGATTGgctctttgaaaattttcgaaaa
acgtTGATCATTTGGCTGACGTTCTTTTCAACGATGGGTGCAAAACCagc
caaaatatcaaaatggaaAGCTGGCGTCAGCATACGTCGTCTCTGCTTCC
ACAAAACGCCATCAGATGCAAAAACGCCATTCCCAACCAGTGCTTTAAGC
ATAGAATACAATAAAGGCGCTTTGGTGATATATTTGGGACTGCTCAGATA
AGCTTCGATGACTTCCAAATTTGACGTCACTACAATCTTATTGGTCAATA
GGTAGAAGGCGAAGGTCCCANACTTCCAAATTTGACGTCACTACAATCTT
ATTGGTCAATAAGTAGAAGGCGAAGGTCCCATTATACTCTTTATGCCATT
GATCACAAAGCTTTCGAAATTTCTTCTGATTGATTAGGAGAGGTATGTGG
CCAATCAGTGGCCAGTCGCCAGGGGCAACGGGAATGGTATCACTCCCTTC
TCGAGTGAAATGTTTCCACCATATGACAAGTAGGATGAACCCACCAAACA
CTAAAGTGATTAACCACCAAGTCAAACCCATTATTTTGTAGAATGTCTTg
tctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048310-exon-scaffold_142-1491911889:697760..699217 | TCONS_00048310-exon-scaffold_142-1491911889:697760..699217 | Clytia hemisphaerica | exon |
| TCONS_00048310-exon-scaffold_142-1510915933:697760..699217 | TCONS_00048310-exon-scaffold_142-1510915933:697760..699217 | Clytia hemisphaerica | exon |
| TCONS_00048310-exon-scaffold_142-1575043694:697760..699217 | TCONS_00048310-exon-scaffold_142-1575043694:697760..699217 | Clytia hemisphaerica | exon |
| TCONS_00048310-exon-scaffold_142-1491911889:699279..699513 | TCONS_00048310-exon-scaffold_142-1491911889:699279..699513 | Clytia hemisphaerica | exon |
| TCONS_00048310-exon-scaffold_142-1510915933:699279..699513 | TCONS_00048310-exon-scaffold_142-1510915933:699279..699513 | Clytia hemisphaerica | exon |
| TCONS_00048310-exon-scaffold_142-1575043694:699279..699513 | TCONS_00048310-exon-scaffold_142-1575043694:699279..699513 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:697760..699513 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00048310 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 201.445 bits (511), Expect = 8.696e-57 Identity = 145/476 (30.46%), Postives = 245/476 (51.47%), Query Frame = -3
Query: 204 IPVAPGDWPLIGHIPLL-INQKKFRKLCDQWHKEYNGTFAFYLLTNKI--VVTSNLEVIEAYLSSPKYITKAPLLYSMLKALVGNGVFASDGVLWKQRRRMLTPAFHFDILAGFAPIVEKNVSQMINVFRKFSKSQSEFNVYEIAKSFAIAVICETSMGKHITFGDGVEKEELKCLFEQGTELMMKRFYRPWLYNDWFYSLTADGRLFIRQRDILRCM---VXXXXXXXXXXXEKC-------TEVETKQKIFIDILLDCYXXXXXXXXXX--XXXXXGMLFAGYETTASALSFVLYCLGRNQKAQKKLFDEITSFEKKGN--LELSDLKELKYLDMVIKETMRLHVTVNAFQRDIKEGTVLAGH-VFPECWLSIDLRIVNHNPKYWKDPMSFIPERFENFDERKKEK-AFMFIPFSAGPRNCVGQRFAMMELRIALFYLVKNFKVTSLQEENELEQTFEAANTSLNGLMLKIDER 1574
IP +PL+GH L+ + ++F + ++ +EY L + V N E +E L+S K I K+ + Y L+ +G G+ S G W+ RR+MLTP FHF IL F I+ + + ++ K +Q FN + A+ +ICET+MGK+I + E ++ ++ +E++ +R PWL+ D +Y + +G + IL V + E C + K++ F+D+LL + + +E+ +F G++TTA+A+++ LY LG N + QKK+ E+ K + + DLK+L+YL+ VIKET+RL +V F R + E +AG+ V I ++ +P+Y+ +P F PERF F E + + + ++PFSAGPRNC+GQ+FA+ME + L ++++F + S Q+ EL + NG+ +K+ R
Sbjct: 50 IPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSM-YKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHI-NQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRM-SEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF--FPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
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