TCONS_00048311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048311
Unique NameTCONS_00048311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048311 ID=TCONS_00048311|Name=TCONS_00048311|organism=Clytia hemisphaerica|type=transcript|length=171bp
GCTGCGAGAGAACGAAGAAGCATCAACAATTCATTTGATAAAGTCTCACA
ACAAGAAAAGGTGAAACAAACGAAaacaaaacgaaaatgaaatcTATCAT
TGCTCTCGCTCTCGTAGCAGTTGCTTCAGCCATCACCAACCCACCCATCA
CTGGAACAACACCACCAGCTN
Run BLAST on NCBI

transcript from alignment at scaffold_142:713431..713884+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048311 ID=TCONS_00048311|Name=TCONS_00048311|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_142:713431..713884+ (Clytia hemisphaerica)
GCTGCGAGAGAACGAAGAAGCATCAACAATTCATTTGATAAAGTCTCACA
ACAAGAAAAGGTGAAACAAACGAAaacaaaacgaaaatgaaatcTATCAT
TGCTCTCGCTCTCGTAGCAGGTAAGACTTactatttttcataacttttct
tattaccataatggtTGATCAAtagttttattttcatatttcagTCATTC
ATATTTCAGTTTGCTTTTTAATTATTGTGATAGCACTAACGAAAGATATC
ACATTCATCaataaaataataaagtggTACAAATAGCTCTGGGTACGAGA
CTGATCTATCTGCCTATATCCAGAAAAAGACATTTGATTTTCATATAGGG
TTTTCCTTAATATTTAGAATTgttttataactttttgtttcttCAATTTA
CAGTTGCTTCAGCCATCACCAACCCACCCATCACTGGAACAACACCACCA
GCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030750XLOC_030750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048311-exon-scaffold_142-1491911889:713431..713550TCONS_00048311-exon-scaffold_142-1491911889:713431..713550Clytia hemisphaericaexon
TCONS_00048311-exon-scaffold_142-1510915933:713431..713550TCONS_00048311-exon-scaffold_142-1510915933:713431..713550Clytia hemisphaericaexon
TCONS_00048311-exon-scaffold_142-1575043694:713431..713550TCONS_00048311-exon-scaffold_142-1575043694:713431..713550Clytia hemisphaericaexon
TCONS_00048311-exon-scaffold_142-1491911889:713834..713884TCONS_00048311-exon-scaffold_142-1491911889:713834..713884Clytia hemisphaericaexon
TCONS_00048311-exon-scaffold_142-1510915933:713834..713884TCONS_00048311-exon-scaffold_142-1510915933:713834..713884Clytia hemisphaericaexon
TCONS_00048311-exon-scaffold_142-1575043694:713834..713884TCONS_00048311-exon-scaffold_142-1575043694:713834..713884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:713431..713884 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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