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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048312 ID=TCONS_00048312|Name=TCONS_00048312|organism=Clytia hemisphaerica|type=transcript|length=680bp
GCTGCGAGAGAACGAAGAAGCATCAACAATTCATTTGATAAAGTCTCACA
ACAAGAAAAGGTGAAACAAACGAAaacaaaacgaaaatgaaatcTATCAT
TGCTCTCGCTCTCGTAGCAGTTGCTTCAGCAATCACCAACCCACCCATCA
CTGGAACAACACCACCAGCAATTGAATGCCCAAATTCATTATGTAACGGT
AGAAATGATGGCAACTTTGCTATTGATTACTACAGCAACTACTTCGTCCA
ATGTGTTGGTGGATTGGCTTACTGTCAAGCTTGCTTCCCACTCTCTTTGG
AATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAAAACGACGACTGT
GTCACCACACAAAAATGGCACCCAGCCACCACTTTCTCTTGCCCAGACAA
ATGCCCCCATTACGGACCAGACTTCAGTGGAAACATTGAAGACCCAGATC
AACCACGACAATACGTTGCTTGCTGGAAGGGAGTCACTGTTGGATGTGTT
GCTTGTCCAGGAAACTTGAAATTCAACCAACAAGAAAACGCTTGCTTGTA
CGAAGGCAAATACCTCACCGAGCCATCCCACTAAATTAAACTTAATTTAT
TAATTTGATaaatctctaaaaatgaaaatattttaacgcTATGTTTTTCC
ACATCAGAATAAACGTTCATCATAGTACAA Run BLAST on NCBI transcript from alignment at scaffold_142:713431..718565+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048312 ID=TCONS_00048312|Name=TCONS_00048312|organism=Clytia hemisphaerica|type=transcript|length=5135bp|location=Sequence derived from alignment at scaffold_142:713431..718565+ (Clytia hemisphaerica)
GCTGCGAGAGAACGAAGAAGCATCAACAATTCATTTGATAAAGTCTCACA
ACAAGAAAAGGTGAAACAAACGAAaacaaaacgaaaatgaaatcTATCAT
TGCTCTCGCTCTCGTAGCAGGTAAGACTTactatttttcataacttttct
tattaccataatggtTGATCAAtagttttattttcatatttcagTCATTC
ATATTTCAGTTTGCTTTTTAATTATTGTGATAGCACTAACGAAAGATATC
ACATTCATCaataaaataataaagtggTACAAATAGCTCTGGGTACGAGA
CTGATCTATCTGCCTATATCCAGAAAAAGACATTTGATTTTCATATAGGG
TTTTCCTTAATATTTAGAATTgttttataactttttgtttcttCAATTTA
CAGTTGCTTCAGCCATCACCAACCCACCCATCACTGGAACAACACCACCA
GCTNCGAAGGCAAATACCTCACCGAGCCATCCCACTAAATTAAACTTAAT
TTATTAATTTGATaaatctctaaaaatgaaaatattttaacgcTATATTT
TTCCACATCAGAATAAACGTTCATCATAGTACAACATTTTTTGTCTTatc
aatatttgaaaaaatttcccgtttatgtttttttaagaaGCTGCAAAACC
AATCCCTGATGTCTAAGTCCTGGTTGTTTTAGTCCCTTTAAAAGGACCTT
GCCATTGTTGAAGTAAATAAAGTTAAATCTCAATGTACATACTTCACCAA
TTCTGTAGTTTTGTTTAGTGCAATAAAATATATTGGCTTCTTTACTAATA
GTGGGCCAGGGTTCCCATAATCCAATGGAAATCAGTTATTCGTCCCTACC
CTTACTCGAAATGAAGAGCTATGCTTGGATTTTGagtaaattttgttatt
ttaatcTCCACACATCCTTATCTAAAACAAAATTACAATCTAAATTAAAC
TCCATtccttgaaaaactttttcgaatttgaattttcatttataaagctt
ggtatttcatattttacattcctgtctcacagccccagtggaactcTTTC
CCATAATGAGATGAAAACTTCAATCAAAATacatggggatagaaattaaa
TTGTTCAGagctaaaaaatccagtggcATGGTTTGGAAATGTAATTGTTC
CCTTGAAATTTTAAATGCGCATAAAATCAATTTCCAAGTGGAGGGACACT
TTTCTCGAAAGAtcagcttggtaaaactagCAGAAAATTGGTTTAGATCA
TTTTCCTGAAACATATTAAAATTATCTTATGTTATCgaattttttctttg
gaaaatacaagaagtTCTATTGGTCgagtttccttgaaaaatacgtcCAA
ATACAAGATGTAAGTTTGttatatataatttttcttggaaaacaTAAGAC
ATATTCTCTAcataattttcctttgaaaatacatgaaaatgttttactcA
TAATGTTCCATTTGATATTCAAGAAAAtattgttgttcttttttttttga
caaatacaAGAAATCATGTAAATTTCTCATGATAAGCAATACATTTTCAT
ATCTCAGAATACGATGCAAGCTTAATTATTATCGTAAAGAGCCGactcgg
acgacgccgggactGCTAGTTACTCAGAACGTCTCTGCTGATTTTCCTCT
CGTAGTCTAACCGGAAGGTCAGAGTTGAAGAGCATTGTTAGAAGCTTTTa
taacagcttttctgatttcCAAAGTGattcagaaataaaaaacacTGACA
GGATGAGTGTTATAATCCTCAGTGAGACGAAAATTTTCCtcttattgaaa
atgaaattgtttcaaAGATAATCATTGAGTGATTGTAGATTAAGCTGACA
CATCCATGTGACATTTTTAGTTAAGTCTCGTTAGGTCTCAAGATAGTGTA
TAAACCAtattcagacgttacggttccgtatcgTTTCGCAACAAAACGGT
TccaaaacaagtgtgaacgtcaaaatttgaaacgttAAAAAAAAGAGTAC
GTTACAAACTAAAACAGAGCGAAACAgttcgctccactattttcattgGA
ACGAAACTGCTCAATTTTCTTTGCTCGGAAACGCTCCCAAacaatatgaa
cactctcgatccgaGCGGAAACAATACTGAAGCGATACaaaacagtaacg
tgtgaacacgATCTAAAGGTATAGGGTGCACTCAATCTGAAACCTGCTGT
ATATATGTAGCCAAAAGTTAGGATCTCAAAATTGGACCCTGAGCAGAAAA
ATTTTAGTCGAAATTTGAGTAGATTTGGGTGGAAAAACGTTTGTTTTTAA
CACCCGTACAGTACAATTTTTCTCATGTCGACCCCCGGGTTATATCAGCA
CTATCGATCAAATGACAGTTGATAAATTTCAATTCCCCATGAAAATGGAG
AGCATAAACTTTAATGcagtcagtttttttttcattgttgaATATAATGT
ATTCCCAGTTTAAGAATCGAAAAAGCTATAGAAGCTAGGCCCNTTTGATA
TTCAAGAAAAtattgttgttcttttttttttgacaaatacaAGAAATCAT
GTAAATTTCTCATGATAAGCAATACATTTTCATATCTCAGAATACGATGC
AAGCTTAATTATTATCGTAAAGAGCCGactcggacgacgccgggactGCT
AGTTACTCAGAACGTCTCTGCTGATTTTCCTCTCGTAGTCTAACCGGAAG
GTCAGAGTTGAAGAGCATTGTTAGAAGCTTTTataacagcttttctgatt
tcCAAAGTGattcagaaataaaaaacacTGACAGGATGAGTGTTATAATC
CTCAGTGAGACGAAAATTTTCCtcttattgaaaatgaaattgtttcaaAG
ATAATCATTGAGTGATTGTAGATTAAGCTGACACATCCATGTGACATTTT
TAGTTAAGTCTCGTTAGGTCTCAAGATAGTGTATAAACCAtattcagacg
ttacggttccgtatcgTTTCGCAACAAAACGGTTccaaaacaagtgtgaa
cgtcaaaatttgaaacgttAAAAAAAAGAGTACGTTACAAACTAAAACAG
AGCGAAACAgttcgctccactattttcattgGAACGAAACTGCTCAATTT
TCTTTGCTCGGAAACGCTCCCAAacaatatgaacactctcgatccgaGCG
GAAACAATACTGAAGCGATACaaaacagtaacgtgtgaacacgATCTAAA
GGTATAGGGTGCACTCAATCTGAAACCTGCTGTATATATGTAGCCAAAAG
TTAGGATCTCAAAATTGGACCCTGAGCAGAAAAATTTTAGTCGAAATTTG
AGTAGATTTGGGTGGAAAAACGTTTGTTTTTAACACCCGTACAGTACAAT
TTTTCTCATGTCGACCCCCGGGTTATATCAGCACTATCGATCAAATGACA
GTTGATAAATTTCAATTCCCCATGAAAATGGAGAGCATAAACTTTAATGc
agtcagtttttttttcattgttgaATATAATGTATTCCCAGTTTAAGAAT
CGAAAAAGCTATAGAAGCTAGTCCCTGTGTGGAGTCTTCAGCgcaaaaaa
aacacttttcatTCATTCTACAGTTTTCTGACGAATGTAATGCGACCACC
AAATAGACGAACCTCTCATGACTCAAACTCCAATGGTCATATCATCATAT
CAccagaaagaaagaaaacgaAGATTAAgcattgaaaaatgaaaaatctg
gCACATACAGTCGTTGTTATGGCAACCCAACATAAGCAGAATCCTTAAGC
TTCCCTTTCCTCAACTTATCGAACATAATATCGATCGTAATTGATATTTT
AGAAAATCACGTCTATCGacaaaatggaagaaaaaataacttaTTACTGA
TTACCAATATATTACAAGAGAAAATGACTACACGCATGACTAATAATTAG
CCTTTTCCGTCAAGAAagctatgaaaaagaaaaaaagggaaatcttaCAA
ATAtctcattttcttttgattGCAGGCCCGGATGTTTGGCATAATTAAGT
TAATGCTTTACGAAATGCTAATTAACCTCGTATCCCTATAAAAGGGGCTG
CAAGAGAACGAAGAAGCATCAACAATTCATTCGATAAAGTCTCACAACAA
GAAAAGGTGAAGCAAacgaaaacaaaaacgaaaatgaaatcCATCATTGC
CCTCGCTCTCGTAGCAGGTAAGACTTAATATCTttcataacaaaatattt
ttattaccatAATGGTTGATCAATAGTTTTATTTTCCTATTTCAGTCAAA
CTTATTATTTGATCtctttacttttattttcatctgataGCCAAACTTGA
ACCCATTCCTTTTGTATGCTTTTTAGTTATTGTGATAGCACTAATGAAAG
ATATCACAttcatcaataaaataaaaaagtggtaCAGATAGCTCTGGGTA
GNGATAGCACTAACGAAAGATATCACATTCATCaataaaataataaagtg
gTACAAATAGCTCTGGGTACGAGACTGATCTATCTGCCTATATCCAGAAA
AAGACATTTGATTTTCATAGGGTTTTCCTTAATATTTAGAATTgttttat
aactttttgtttcttCAATTTACAGTTGCTTCAGCAATCACCAACCCACC
CATCACTGGAACAACACCACCAGCAATTGAATGCCCAAATTCATTATGTA
ACGGTAGAAATGATGGCAACTTTGCTATTGATTACTACAGCAACTACTTC
GTCCAATGTGTTGGTGGATTGGCTTACTGTCAAGCTTGCTTCCCACTCTC
TTTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAAAACGACG
ACTGTGTCACCACACAAAAATGGCACCCAGCCACCACTTTCTCTTGCCCA
GACAAATGCCCCCATTACGGACCAGACTTCAGTGGAAACATTGAAGACCC
AGATCAACCACGACAATACGTTGCTTGCTGGAAGGGAGTCACTGTTGGAT
GTGTTGCTTGTCCAGGAAACTTGAAATTCAACCAACAAGAAAACGCTTGC
TTGTACGAAGGCAAATACCTCACCGAGCCATCCCACTAAATTAAACTTAA
TTTATTAATTTGATaaatctctaaaaatgaaaatattttaacgcTATGTT
TTTCCACATCAGAATAAACGTTCATCATAGTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048312-exon-scaffold_142-1491911889:713431..713550 | TCONS_00048312-exon-scaffold_142-1491911889:713431..713550 | Clytia hemisphaerica | exon |
| TCONS_00048312-exon-scaffold_142-1510915933:713431..713550 | TCONS_00048312-exon-scaffold_142-1510915933:713431..713550 | Clytia hemisphaerica | exon |
| TCONS_00048312-exon-scaffold_142-1575043694:713431..713550 | TCONS_00048312-exon-scaffold_142-1575043694:713431..713550 | Clytia hemisphaerica | exon |
| TCONS_00048312-exon-scaffold_142-1491911889:718006..718565 | TCONS_00048312-exon-scaffold_142-1491911889:718006..718565 | Clytia hemisphaerica | exon |
| TCONS_00048312-exon-scaffold_142-1510915933:718006..718565 | TCONS_00048312-exon-scaffold_142-1510915933:718006..718565 | Clytia hemisphaerica | exon |
| TCONS_00048312-exon-scaffold_142-1575043694:718006..718565 | TCONS_00048312-exon-scaffold_142-1575043694:718006..718565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_142 | supercontig | scaffold_142:713431..718565 + |
Blast
The following BLAST results are available for this feature:
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