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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048313 ID=TCONS_00048313|Name=TCONS_00048313|organism=Clytia hemisphaerica|type=transcript|length=701bp
CTCGTATCCCTATAAAAGGGGCTGCAAGAGAACGAAGAAGCATCAACAAT
TCATTCGATAAAGTCTCACAACAAGAAAAGGTGAAGCAAacgaaaacaaa
aacgaaaatgaaatcCATCATTGCCCTCGCTCTCGTAGCAGTTGCTTCAG
CAATCACCAACCCACCCATCACTGGAACAACACCACCAGCAATTGAATGC
CCAAATTCATTATGTAACGGTAGAAATGATGGCAACTTTGCTATTGATTA
CTACAGCAACTACTTCGTCCAATGTGTTGGTGGATTGGCTTACTGTCAAG
CTTGCTTCCCACTCTCTTTGGAATTCAGTCAAACTTGCAACCAATGTTTG
TACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCAC
CACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCAGACTTCAGTG
GAAACATTGAAGACCCAGATCAACCACGACAATACGTTGCTTGCTGGAAG
GGAGTCACTGTTGGATGTGTTGCTTGTCCAGGAAACTTGAAATTCAACCA
ACAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCATCCC
ACTAAATTAAACTTAATTTATTAATTTGATaaatctctaaaaatgaaaat
attttaacgcTATGTTTTTCCACATCAGAATAAACGTTCATCATAGTACA
A Run BLAST on NCBI protein sequence of TCONS_00048313-protein >TCONS_00048313-protein ID=TCONS_00048313-protein|Name=TCONS_00048313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
RIPIKGAARERRSINNSFDKVSQQEKVKQTKTKTKMKSIIALALVAVASA
ITNPPITGTTPPAIECPNSLCNGRNDGNFAIDYYSNYFVQCVGGLAYCQA
CFPLSLEFSQTCNQCLYSKNDDCVTTQKWHPATTFSCPDKCPHYGPDFSG
NIEDPDQPRQYVACWKGVTVGCVACPGNLKFNQQENACLYEGKYLTEPSH Run BLAST on NCBI transcript from alignment at scaffold_142:717457..718565+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048313 ID=TCONS_00048313|Name=TCONS_00048313|organism=Clytia hemisphaerica|type=transcript|length=1109bp|location=Sequence derived from alignment at scaffold_142:717457..718565+ (Clytia hemisphaerica)
CTCGTATCCCTATAAAAGGGGCTGCAAGAGAACGAAGAAGCATCAACAAT
TCATTCGATAAAGTCTCACAACAAGAAAAGGTGAAGCAAacgaaaacaaa
aacgaaaatgaaatcCATCATTGCCCTCGCTCTCGTAGCAGGTAAGACTT
AATATCTttcataacaaaatatttttattaccatAATGGTTGATCAATAG
TTTTATTTTCCTATTTCAGTCAAACTTATTATTTGATCtctttactttta
ttttcatctgataGCCAAACTTGAACCCATTCCTTTTGTATGCTTTTTAG
TTATTGTGATAGCACTAATGAAAGATATCACAttcatcaataaaataaaa
aagtggtaCAGATAGCTCTGGGTAGNGATAGCACTAACGAAAGATATCAC
ATTCATCaataaaataataaagtggTACAAATAGCTCTGGGTACGAGACT
GATCTATCTGCCTATATCCAGAAAAAGACATTTGATTTTCATAGGGTTTT
CCTTAATATTTAGAATTgttttataactttttgtttcttCAATTTACAGT
TGCTTCAGCAATCACCAACCCACCCATCACTGGAACAACACCACCAGCAA
TTGAATGCCCAAATTCATTATGTAACGGTAGAAATGATGGCAACTTTGCT
ATTGATTACTACAGCAACTACTTCGTCCAATGTGTTGGTGGATTGGCTTA
CTGTCAAGCTTGCTTCCCACTCTCTTTGGAATTCAGTCAAACTTGCAACC
AATGTTTGTACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCAC
CCAGCCACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCAGA
CTTCAGTGGAAACATTGAAGACCCAGATCAACCACGACAATACGTTGCTT
GCTGGAAGGGAGTCACTGTTGGATGTGTTGCTTGTCCAGGAAACTTGAAA
TTCAACCAACAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCGA
GCCATCCCACTAAATTAAACTTAATTTATTAATTTGATaaatctctaaaa
atgaaaatattttaacgcTATGTTTTTCCACATCAGAATAAACGTTCATC
ATAGTACAA Coding sequence (CDS) from alignment at scaffold_142:717457..718565+ >TCONS_00048313 ID=TCONS_00048313|Name=TCONS_00048313|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_142:717457..718565+ (Clytia hemisphaerica)
CGTATCCCTATAAAAGGGGCTGCAAGAGAACGAAGAAGCATCAACAATTC
ATTCGATAAAGTCTCACAACAAGAAAAGGTGAAGCAAacgaaaacaaaaa
cgaaaatgaaatcCATCATTGCCCTCGCTCTCGTAGCAGTTGCTTCAGCA
ATCACCAACCCACCCATCACTGGAACAACACCACCAGCAATTGAATGCCC
AAATTCATTATGTAACGGTAGAAATGATGGCAACTTTGCTATTGATTACT
ACAGCAACTACTTCGTCCAATGTGTTGGTGGATTGGCTTACTGTCAAGCT
TGCTTCCCACTCTCTTTGGAATTCAGTCAAACTTGCAACCAATGTTTGTA
CAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCA
CTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCAGACTTCAGTGGA
AACATTGAAGACCCAGATCAACCACGACAATACGTTGCTTGCTGGAAGGG
AGTCACTGTTGGATGTGTTGCTTGTCCAGGAAACTTGAAATTCAACCAAC
AAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCATCCCAC
TAACGTATCCCTATAAAAGGGGCTGCAAGAGAACGAAGAAGCATCAACAA
TTCATTCGATAAAGTCTCACAACAAGAAAAGGTGAAGCAAacgaaaacaa
aaacgaaaatgaaatcCATCATTGCCCTCGCTCTCGTAGCAGTTGCTTCA
GCAATCACCAACCCACCCATCACTGGAACAACACCACCAGCAATTGAATG
CCCAAATTCATTATGTAACGGTAGAAATGATGGCAACTTTGCTATTGATT
ACTACAGCAACTACTTCGTCCAATGTGTTGGTGGATTGGCTTACTGTCAA
GCTTGCTTCCCACTCTCTTTGGAATTCAGTCAAACTTGCAACCAATGTTT
GTACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCA
CCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCAGACTTCAGT
GGAAACATTGAAGACCCAGATCAACCACGACAATACGTTGCTTGCTGGAA
GGGAGTCACTGTTGGATGTGTTGCTTGTCCAGGAAACTTGAAATTCAACC
AACAAGAAAACGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCATCC
CACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048313-exon-scaffold_142-1491911889:717457..717597 | TCONS_00048313-exon-scaffold_142-1491911889:717457..717597 | Clytia hemisphaerica | exon |
| TCONS_00048313-exon-scaffold_142-1510915933:717457..717597 | TCONS_00048313-exon-scaffold_142-1510915933:717457..717597 | Clytia hemisphaerica | exon |
| TCONS_00048313-exon-scaffold_142-1575043694:717457..717597 | TCONS_00048313-exon-scaffold_142-1575043694:717457..717597 | Clytia hemisphaerica | exon |
| TCONS_00048313-exon-scaffold_142-1491911889:718006..718565 | TCONS_00048313-exon-scaffold_142-1491911889:718006..718565 | Clytia hemisphaerica | exon |
| TCONS_00048313-exon-scaffold_142-1510915933:718006..718565 | TCONS_00048313-exon-scaffold_142-1510915933:718006..718565 | Clytia hemisphaerica | exon |
| TCONS_00048313-exon-scaffold_142-1575043694:718006..718565 | TCONS_00048313-exon-scaffold_142-1575043694:718006..718565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:717457..718565 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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