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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048314 ID=TCONS_00048314|Name=TCONS_00048314|organism=Clytia hemisphaerica|type=transcript|length=3109bpRun BLAST on NCBI protein sequence of TCONS_00048314-protein >TCONS_00048314-protein ID=TCONS_00048314-protein|Name=TCONS_00048314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MPSSPDDEKSQFWLINGGGGNEGSGEKQEAPKRDLWGSQKEFLLSCVGYTRun BLAST on NCBI transcript from alignment at scaffold_142:725068..734772+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048314 ID=TCONS_00048314|Name=TCONS_00048314|organism=Clytia hemisphaerica|type=transcript|length=9705bp|location=Sequence derived from alignment at scaffold_142:725068..734772+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:725068..734772+ >TCONS_00048314 ID=TCONS_00048314|Name=TCONS_00048314|organism=Clytia hemisphaerica|type=CDS|length=22752bp|location=Sequence derived from alignment at scaffold_142:725068..734772+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048314 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2) HSP 1 Score: 503.827 bits (1296), Expect = 1.836e-165 Identity = 252/587 (42.93%), Postives = 374/587 (63.71%), Query Frame = 2
Query: 197 EAPKRDLWGSQKEFLLSCVGYTVGLGNIWRFPYLAYQSGGGAFLIPYIVMLITCGMPMYIMEVALGQYIAEGPIQVWRIVCPLFRGIGYSMLMVSFLVGVYYNVIIAWVLFYLFASFRADIPWRHCDPTWATKYCLEGPRPSGNGSLFNTTTGMLSCLKGFDLSTKLVNGSSVMYCKPYEKWNYPSIEYFSNYVLEQTNSIDDTGKIRWQLVLCLLLSWMVVYFCMWKGVKSAGKVVYFTATFPYXXXXXXXXXXXXXPNAIEGVTYYIKPDFEKIAKPEVWAAAGGQLFYSLGPAFGSLLSFASYNKFNNNCIRDAMFISALDACTSSLAGLVIFSVLGSMAKSLNVDVKDVATHGPGLAFMVYPEGISQMPLSTFWSIIFFFMLFTLGLDSQFGMMECIVTNLVDEYPTYLRKRKELFIFGVCVTCFLFGFTIITQAGIYWFTIFDYQSA-GVCLIFVAFVEIIVVGWFFDADRLLKMVEQMVGYKPSRWWRLCWKFISPVIMGLVLIFKLTQWEGISYGTYKFPPWAEAIGWMLALATAIMIPLFAVITLFKADGNSLWQKIKTSVRPKIEILNKKGAENGVEE 1954
+ P RD W + +FL+SCVGY +GLGN+WRFPYL ++GGGAFLIPY + LI G+P++++E +LGQY + G + VW++ P+F+G+G + ++SF + +YY VII+W ++YL+ SF +PW+ CD W T C N S+ NTT N +S + +E++ + + T+ +D G+IRW L + L ++W++VYFC+WKGV GKVVYF+AT+PY++L+IL RG+TLP A EG+ +YI P+F K++ EVW A Q+F+S G GSL++ SYN F+NN RD++ + +++CTS AG VIFS++G MA + DVA GPGLAF+ YPE ++Q+P+S W+I+FF ML LG+DSQF +E +T LVDEYP LR R+ELFI VC+ +L G + ITQ GIY F +FDY SA G+ L+F+ F E + + WF+ +R +++MVG +P WW+LCW F +P+I+ V IF Q ++ G Y FP W + +GW++AL++ ++IP + G SL Q+I+ V+P +I+ ENG E+
Sbjct: 40 DLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKL-APMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS------NYSMVNTT-----------------NMTSAV------------VEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGNYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKG-SLKQRIQVMVQPSEDIVRP---ENGPEQ 586 The following BLAST results are available for this feature:
BLAST of TCONS_00048314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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