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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048316 ID=TCONS_00048316|Name=TCONS_00048316|organism=Clytia hemisphaerica|type=transcript|length=2428bpRun BLAST on NCBI protein sequence of TCONS_00048316-protein >TCONS_00048316-protein ID=TCONS_00048316-protein|Name=TCONS_00048316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=808bp VKFRQLTKRKIMRIMYCLLLVITQNYYACTSKQNIYFGAFLSNIVKDDLCRun BLAST on NCBI transcript from alignment at scaffold_142:808549..819737+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048316 ID=TCONS_00048316|Name=TCONS_00048316|organism=Clytia hemisphaerica|type=transcript|length=11189bp|location=Sequence derived from alignment at scaffold_142:808549..819737+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:808549..819737+ >TCONS_00048316 ID=TCONS_00048316|Name=TCONS_00048316|organism=Clytia hemisphaerica|type=CDS|length=38832bp|location=Sequence derived from alignment at scaffold_142:808549..819737+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048316 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 4.111e-66 Identity = 199/714 (27.87%), Postives = 346/714 (48.46%), Query Frame = 1
Query: 157 AAIDVAVRLINEDDTILKDFKLKVKYFDNLGMSGFGMTEFFHVYQMKETLQFMLGPFTEQ------------------FAEPMRLLTDRINLPMVEDNGKTFQSQRKALVALLNHFGWKKLHML-YDIAYIHFVQNANQLKKLLKSEEDHSIDIQGFSSVPYFNVEKQIQNIKKHDGRIIFIDMDRWTAPTIFCDIYLQNMSYPRHIFISGNIHDLENNWHEM--TDDNTRRCTSQQILKAAEGFLFLKRSDFQINGGPRRAKKTRGEIWELIKRYKQRTWNHYINKYVKKKKFREEWDKITYNKGSGRVFDLVYRAALALDKLIKQHGA----EKVLMKSYHDTEKYSMITKAIKTMEFYGVSGKQRDMDLGHDLDHV-IHQYRNGSFVEVGYYTTTTNTISF--HTKLFNETRPPRDGVLLQEVFLEYKWNILLTLWIGAFSGILIALSLLFLNWSYRHKRVIKMSSPKVNNLIILGCISCYLSIIFFGLDSRFTSKDNSNTMCTATISSLSIGFTLSFGGLFSKTWRVYRIFAAARTNSRIAVRDVQLYIMXXXXXXXXXXXXXCFITFNPFH--LEGFQLSQKFYPQEDRMEIQIHQL---CSCSNQTAFVATLVSFKVLLLIFGLFMAWETRHVHIPVLNDSKHIGLAVYFVAFVSTIGAICSTALSTTGYFEESYLVIGLSIFLCTTSTLLLVFLGKVSLIFDKTGRD 2199
A+++A+ I ++++L+ + L ++ +D + G+ F+ + + G FA +L D+ P + + A++ LL H+ WK++ L D+ F + N L +L E+ D + FS+ P +V+K +K +D RII D+ A +FC Y +NM ++ +I + E +W E T+ N+ RC + +L A EG++ + DF+ P +K+ IK +T Y +Y K+ + +K G +D ++ A L + ++ A +++ +Y D +I A+ F+GV+G Q G + + Q+++ V+VG Y +T+ T F + PP+D ++ E + + L G+++A + LF N R++++IKMSSP +NNLIILG + Y SI FGLD F S+ T+CT L++G+T +FG +F+KTWRV+ IF + +I ++D +L +++ +L ID+ IL+C+ +P +E + + P +I I L C ++ T ++ + ++K LL++FG F+AWETR+V IP LNDSK+IG++VY V + IGA + + T + ++ L I C+T TL LVF+ K LI +T D
Sbjct: 79 PAVELAIEQI-RNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQ--RFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKK----LKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWY--EPSWWEQVHTEANSSRCLRKNLLAAMEGYIGV---DFE----PLSSKQ--------IKTISGKTPQQYEREYNNKR------SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTG-QVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSME----PDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGA--AVSFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPK--LITLRTNPD 752 The following BLAST results are available for this feature:
BLAST of TCONS_00048316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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