TCONS_00048319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048319
Unique NameTCONS_00048319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048319 ID=TCONS_00048319|Name=TCONS_00048319|organism=Clytia hemisphaerica|type=transcript|length=377bp
acaggtcattcatttaagggctatgcatgttagcctccactgatgcaagt
taccccatCTCACGGTATCGCATTTATACGTGTGACATGCTTAAAAAGTT
TagaatttgaaataaagattGCTTGAAttaaataaatacaaaataaaaat
aaaaatagtttaCTACTTCGCACAACGGATGTAGTGCGGCACTTTGTATT
TTATCCAAAAGCATTTCACATGACAAAAACGTTCCTTCTTCCACACGTAA
ACAATTGTATTGCAAAGAACAGGTGTTCTGTTAGGGTCACGTTCCATGTT
CATTCCGTGAGGGTCACGTTCCATGTTCATTCCTTGAGGGTCACGTTCCA
CGTTCATTCCTTGAGGGTCACGTTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_142:846439..846896+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048319 ID=TCONS_00048319|Name=TCONS_00048319|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at scaffold_142:846439..846896+ (Clytia hemisphaerica)
acaggtcattcatttaagggctatgcatgttagcctccactgatgcaagt
taccccatCTCACGGTATCGCATTTATACGTGTGACATGCTTAAAAAGTT
TagaatttgaaataaagattGCTTGAAttaaataaatacaaaataaaaat
aaaaatagtttaCTACTTCGCACAACGGATGTAGTGCGGCACTTTGTATT
TTATCCAAAAGCATTTCACATGACAAAAACGTTCCTTCTTCCACACGTAA
ACAATTGTATTGCAAAGAACAGGTGTTCTGTTAGGGTCACGTTCCATGTT
CATTCCGTGAGGTTCACGTTCTGCGTTCATTCCATGAGGGTCACGTTTCA
CACTCATTCCGTGAGGGTCACGCTCTGCGTTAATTCCATGAGGGTCACGT
TCCATGTTCATTCCTTGAGGGTCACGTTCCACGTTCATTCCTTGAGGGTC
ACGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030754XLOC_030754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048319-exon-scaffold_142-1491911889:846439..846749TCONS_00048319-exon-scaffold_142-1491911889:846439..846749Clytia hemisphaericaexon
TCONS_00048319-exon-scaffold_142-1510915933:846439..846749TCONS_00048319-exon-scaffold_142-1510915933:846439..846749Clytia hemisphaericaexon
TCONS_00048319-exon-scaffold_142-1575043694:846439..846749TCONS_00048319-exon-scaffold_142-1575043694:846439..846749Clytia hemisphaericaexon
TCONS_00048319-exon-scaffold_142-1491911889:846831..846896TCONS_00048319-exon-scaffold_142-1491911889:846831..846896Clytia hemisphaericaexon
TCONS_00048319-exon-scaffold_142-1510915933:846831..846896TCONS_00048319-exon-scaffold_142-1510915933:846831..846896Clytia hemisphaericaexon
TCONS_00048319-exon-scaffold_142-1575043694:846831..846896TCONS_00048319-exon-scaffold_142-1575043694:846831..846896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:846439..846896 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.55819	2.08156	2.65609	4.96797	0	0.125598	0	0	0.364684	0.684055	0	0.630035	0.382366	0.583947	0.622615	0.137965	0	0	1.33524	0.367379	6.66208	3.77008	3.28404	2.49799	0.603485	0	0.594124	0	1.41188	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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