TCONS_00048320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048320
Unique NameTCONS_00048320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048320 ID=TCONS_00048320|Name=TCONS_00048320|organism=Clytia hemisphaerica|type=transcript|length=402bp
aggtcattcatttaagggctatgcatgttagcctccactgatgcaagtta
ccccatCTCACGGTATCGCATTTATACGTGTGACATGCTTAAAAAGTTTa
gaatttgaaataaagattGCTTGAAttaaataaatacaaaataaaaataa
aaatagtttaCTACTTCGCACAACGGATGTAGTGCGGCACTTTGTATTTT
ATCCAAAAGCATTTCACATGACAAAAACGTTCCTTCTTCCACACGTAAAC
AATTGTATTGCAAAGAACAGGTGTTCTGTTAGGGTCACGTTCCATGTTCA
TTCCGTGAGGGTCACGCTCTGCGTTAATTCCATGAGGGTCACGTTCCATG
TTCATTCCTTGAGGGTCACGTTCCACGTTCATTCCTTGAGGGTCACGTTT
CA
Run BLAST on NCBI

transcript from alignment at scaffold_142:846441..846896+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048320 ID=TCONS_00048320|Name=TCONS_00048320|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_142:846441..846896+ (Clytia hemisphaerica)
aggtcattcatttaagggctatgcatgttagcctccactgatgcaagtta
ccccatCTCACGGTATCGCATTTATACGTGTGACATGCTTAAAAAGTTTa
gaatttgaaataaagattGCTTGAAttaaataaatacaaaataaaaataa
aaatagtttaCTACTTCGCACAACGGATGTAGTGCGGCACTTTGTATTTT
ATCCAAAAGCATTTCACATGACAAAAACGTTCCTTCTTCCACACGTAAAC
AATTGTATTGCAAAGAACAGGTGTTCTGTTAGGGTCACGTTCCATGTTCA
TTCCGTGAGGTTCACGTTCTGCGTTCATTCCATGAGGGTCACGTTTCACA
CTCATTCCGTGAGGGTCACGCTCTGCGTTAATTCCATGAGGGTCACGTTC
CATGTTCATTCCTTGAGGGTCACGTTCCACGTTCATTCCTTGAGGGTCAC
GTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030754XLOC_030754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048320-exon-scaffold_142-1491911889:846441..846749TCONS_00048320-exon-scaffold_142-1491911889:846441..846749Clytia hemisphaericaexon
TCONS_00048320-exon-scaffold_142-1510915933:846441..846749TCONS_00048320-exon-scaffold_142-1510915933:846441..846749Clytia hemisphaericaexon
TCONS_00048320-exon-scaffold_142-1575043694:846441..846749TCONS_00048320-exon-scaffold_142-1575043694:846441..846749Clytia hemisphaericaexon
TCONS_00048320-exon-scaffold_142-1491911889:846804..846896TCONS_00048320-exon-scaffold_142-1491911889:846804..846896Clytia hemisphaericaexon
TCONS_00048320-exon-scaffold_142-1510915933:846804..846896TCONS_00048320-exon-scaffold_142-1510915933:846804..846896Clytia hemisphaericaexon
TCONS_00048320-exon-scaffold_142-1575043694:846804..846896TCONS_00048320-exon-scaffold_142-1575043694:846804..846896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:846441..846896 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.07571	5.47667	2.65049	2.33798	1.48931	0	7.83871	10.7495	1.13426	0	3.08664	0.8173	0	0	0	0.118983	2.74342	3.16045	0	0	2.54977	7.05445	2.23911	4.56621	2.32404	5.26122	0	0	0	1.02803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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