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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048321 ID=TCONS_00048321|Name=TCONS_00048321|organism=Clytia hemisphaerica|type=transcript|length=436bp
gcAACAGAGACGAGATTGAAGATAACTCAATCGAAGAAAATTATAATGAT
CAAACTTTAAATGACATGCAAAAATTCATTCCACAAGAAATATCAAAACG
TTCATTCAGTTGCCCACCAGTCGAGGTCTGCCAACCGAAAGTACACCGAA
AATGCAAGAGAACTGGCAGAACGTCCTTTTTCTGCCTATACTACAAAAAT
TGTCGAAAATGTAATCTAAAAGTCATCTCTGAAGGCCGATGCAAGGTGTC
AACATGTCGAAACTATGGGAAACCAACAACTAGATGTCCCGTTTATTTTC
AGAAATGTACTTCCGGTTACGGATGCTTAGATGGAAAATTCGGTGGGATG
AAATGTGGAACGGTCGCTCGTTGTCAGCAATGTCCGGGAATTTTGCAAGG
TGGAAAATGCATGTCGCAGAAGACACGTTGTCCAAC Run BLAST on NCBI protein sequence of TCONS_00048321-protein >TCONS_00048321-protein ID=TCONS_00048321-protein|Name=TCONS_00048321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
NRDEIEDNSIEENYNDQTLNDMQKFIPQEISKRSFSCPPVEVCQPKVHRK
CKRTGRTSFFCLYYKNCRKCNLKVISEGRCKVSTCRNYGKPTTRCPVYFQ
KCTSGYGCLDGKFGGMKCGTVARCQQCPGILQGGKCMSQKTRCP Run BLAST on NCBI transcript from alignment at scaffold_142:869405..870646+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048321 ID=TCONS_00048321|Name=TCONS_00048321|organism=Clytia hemisphaerica|type=transcript|length=1242bp|location=Sequence derived from alignment at scaffold_142:869405..870646+ (Clytia hemisphaerica)
gcAACAGAGACGAGATTGAAGATAACTCAATCGAAGAAAATTATAATGAT
CAAACTTTAAATGACATGCAAAAATGTAAGTAATTTGGATGATAGTTATT
AATCCCTCGGTTGAATTGTTTGGAAAAATCTTAGATTCCTCTCAAATTCT
GACAAAAAAAACTATCACAAAGATGGAGAATTCTTCATATTGCGTCTTTG
GCGTGATTTAGGGTGTTTCTAAGTTTGACTAATAGGCGTTTTCATAAAAT
ACGTCaggaacatcacttgcctcataTTCAAACGATTACCATGGTGATCA
TGTCCTTTAAGCCCCTTACTACattaaatgatatttttataaatataaag
taGTTTTAATGAAACCTTCTGGGAGTTagtcaccatggcaataatatCAA
AACGaggaggcaagtgatgttcaagacgtaatttatgaaaaaggtctatt
actcTCTGCTGTATATGACCGAACTATATTATTTActcttaggcgagacc
aatttaatttgttgttctacgggtagatcgttagcaaattatgagtcggt
cggtcggtaaaatgaaaataagattttcattaatcaaggaaGGTAATTGG
GCTTTAAgtgatattttcaaataatcttggtcgaaaattcatcattcatt
tttttgatggagtttgtagtaaaatctttcgtgcatagaattcatgattc
tagattattttcaactttttttaagtccaaattttttaaataattagtat
tagaaatttgtggcataggaaattcaatattattattttttcgtttgcag
CAAATGCTGGGTCGGTcgcgcccgtagaacaacaaattaaattggtctcg
ccttaatCTTCGTTATTTTACTCTTTATTAGTCATTCCACAAGAAATATC
AAAACGTTCATTCAGTTGCCCACCAGTCGAGGTCTGCCAACCGAAAGTAC
ACCGAAAATGCAAGAGAACTGGCAGAACGTCCTTTTTCTGCCTATACTAC
AAAAATTGTCGAAAATGTAATCTAAAAGTCATCTCTGAAGGCCGATGCAA
GGTGTCAACATGTCGAAACTATGGGAAACCAACAACTAGATGTCCCGTTT
ATTTTCAGAAATGTACTTCCGGTTACGGATGCTTAGATGGAAAATTCGGT
GGGATGAAATGTGGAACGGTCGCTCGTTGTCAGCAATGTCCGGGAATTTT
GCAAGGTGGAAAATGCATGTCGCAGAAGACACGTTGTCCAAC Coding sequence (CDS) from alignment at scaffold_142:869405..870646+ >TCONS_00048321 ID=TCONS_00048321|Name=TCONS_00048321|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_142:869405..870646+ (Clytia hemisphaerica)
AACAGAGACGAGATTGAAGATAACTCAATCGAAGAAAATTATAATGATCA
AACTTTAAATGACATGCAAAAATTCATTCCACAAGAAATATCAAAACGTT
CATTCAGTTGCCCACCAGTCGAGGTCTGCCAACCGAAAGTACACCGAAAA
TGCAAGAGAACTGGCAGAACGTCCTTTTTCTGCCTATACTACAAAAATTG
TCGAAAATGTAATCTAAAAGTCATCTCTGAAGGCCGATGCAAGGTGTCAA
CATGTCGAAACTATGGGAAACCAACAACTAGATGTCCCGTTTATTTTCAG
AAATGTACTTCCGGTTACGGATGCTTAGATGGAAAATTCGGTGGGATGAA
ATGTGGAACGGTCGCTCGTTGTCAGCAATGTCCGGGAATTTTGCAAGGTG
GAAAATGCATGTCGCAGAAGACACGTTGTCCAAACAGAGACGAGATTGAA
GATAACTCAATCGAAGAAAATTATAATGATCAAACTTTAAATGACATGCA
AAAATTCATTCCACAAGAAATATCAAAACGTTCATTCAGTTGCCCACCAG
TCGAGGTCTGCCAACCGAAAGTACACCGAAAATGCAAGAGAACTGGCAGA
ACGTCCTTTTTCTGCCTATACTACAAAAATTGTCGAAAATGTAATCTAAA
AGTCATCTCTGAAGGCCGATGCAAGGTGTCAACATGTCGAAACTATGGGA
AACCAACAACTAGATGTCCCGTTTATTTTCAGAAATGTACTTCCGGTTAC
GGATGCTTAGATGGAAAATTCGGTGGGATGAAATGTGGAACGGTCGCTCG
TTGTCAGCAATGTCCGGGAATTTTGCAAGGTGGAAAATGCATGTCGCAGA
AGACACGTTGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048321-exon-scaffold_142-1491911889:869405..869479 | TCONS_00048321-exon-scaffold_142-1491911889:869405..869479 | Clytia hemisphaerica | exon |
| TCONS_00048321-exon-scaffold_142-1510915933:869405..869479 | TCONS_00048321-exon-scaffold_142-1510915933:869405..869479 | Clytia hemisphaerica | exon |
| TCONS_00048321-exon-scaffold_142-1575043694:869405..869479 | TCONS_00048321-exon-scaffold_142-1575043694:869405..869479 | Clytia hemisphaerica | exon |
| TCONS_00048321-exon-scaffold_142-1491911889:870286..870646 | TCONS_00048321-exon-scaffold_142-1491911889:870286..870646 | Clytia hemisphaerica | exon |
| TCONS_00048321-exon-scaffold_142-1510915933:870286..870646 | TCONS_00048321-exon-scaffold_142-1510915933:870286..870646 | Clytia hemisphaerica | exon |
| TCONS_00048321-exon-scaffold_142-1575043694:870286..870646 | TCONS_00048321-exon-scaffold_142-1575043694:870286..870646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:869405..870646 + |
Blast
The following BLAST results are available for this feature:
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