TCONS_00048404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048404
Unique NameTCONS_00048404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048404 ID=TCONS_00048404|Name=TCONS_00048404|organism=Clytia hemisphaerica|type=transcript|length=1819bp
AGAAGATCTTGAAGGATTTTaaatcaactttttcttctGACCTAAATTTC
ACTTGAATACCACAAAGATTGTATATCAATGTTACTACAAACGGTCGAGG
TACAACAAACTTCACTCGAAGAAAACAACACAAACGTCGCCATGTTGGAT
CGAAATGAACGGGACCGAAAACCTCGATCGAACGGTCGTTACTTCAATAA
GCAACGTGCACAACAATACTCTCCAACCTCCACCGACACTGGATTGTCCG
GATCTCCACCGTATGTAAACGGAATTAACGGAAGCCGGACTAATCTTACA
AATGGCTACAAACCATCCTACTCGCCGACATCTACTGATGCTGAATCAGT
CTCACCCTTACCTTCAAATGGGTGGGATTTTTCAGAGCTCGAAATGCGCT
ACACATCAATGATAAATAGCCTAAAAGACGAACTTTCTTTTCTTGAAGAA
TCAAACACCAATCTACTTACGGAGCTACGAGAAAGTCAAAACTCGAATTA
CGTATTAACGGAAGAAATTCGACGTCAGCAACGTAACAACTTAAGTACGT
TAGATGAGTTACAAGCGTGCCAAACAGCAAATTCAGTTCTGAGACAGGAG
TTGCAACGTCTTGAGCAATCCAGCGTTAAAATGTCCAGAGATTCTGAAAA
ATACAAGAAGGCGAACTCGATGCTTAAAGATGAGATCAAAGACCTCAAAG
CTCATAACTATAAACGTAAAAACAGTATGGTTACACTCAAAGAGAAAGCT
ATTGATCTACAAAATGACATTCTAGAAAAAGAGAAGGATTTCAAAGATTT
GTCATCTCTCAAACAAACTGTCAATATAATAGTCGAAGCGGTCGAAAACG
ATTCTAACATCGATAACGGCTATTTCCCAACCGATTCGGACATTTCTAGT
AACGATGGCAACGATGATAAACAATTGGGTGCTTTCACTCCAAAACCGGT
GAAAGTATTGGAACGATCAACTCTGCTTCTCCCGAGCAAGGAACCTTTGA
GCTCTAACATTTCATCTTCCGCGTACGTCTGAAGAAACGATTTAAGTGGA
TGCCTAACTCGGATACTACTTTGAATTAATACACCCAGGACGTGTATCTT
CGAGCTCTAACATCTCTTCCATTGAGAATGTACAACCATAACAAGCCAAG
ATGTTGTTTGGACGTTATATTAGCGTTCTTTTAACGAATAATGCTCAGGC
GAGAAATAATCTAACATTTCAAATGTTCTAACATTAATTTGTAGAAGGAC
TTCAAAGAGACTGACATATGAACAATAAATGAACATGTTACATCTTGGCT
CCCGAAACAACGGATTTAATACACAACGTCCCGCAATATCAATCTAACGT
CGTACAGATCTTTTTCGATGGATATTGTTAATGTAGGATCACTAGGAAGG
CACTCATTAACTCAAAAATTATTTGTACGCTTGTATGCGTAGCATCAATG
AAGTCTTTAGTTAGAAGACATTTTTATCTGTACGAAAATATATCTCTAAA
GCGTTCACCATACTTGGAAATGTATCTGGAAATTATCACAACTACTGCTG
TAAAAATACTACTACGAACCGTAAAAATGATCAAGAAGTGAAGTCTGATA
GACTTTTCAATGGCAAAACAGACcaataaaattttacaactttttactAC
AGTTTTGCGTGtttttgtctttaaaaataatatctaaatatcttttaaaa
acctTCTATAAGAATACCCACGTATTTTTACTTGGCAATATACTAAGAAC
ATATTTGACTtaagaattttgtaaaatattgttattttctACAAAACTTT
GAAACATACTAGAAAATGA
Run BLAST on NCBI

transcript from alignment at scaffold_142:870718..876670-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048404 ID=TCONS_00048404|Name=TCONS_00048404|organism=Clytia hemisphaerica|type=transcript|length=5953bp|location=Sequence derived from alignment at scaffold_142:870718..876670- (Clytia hemisphaerica)
AGAAGATCTTGAAGGATTTTAAATCAACTTTTTCTTCTGACCTAAATTTC
ACTTGAATACCACAAAGATTGTATATCAATGTTACTACAAACGGTCGAGG
TAAACATTATCAATTGCTTTTGAAAATTTGATTTTGACTTAAATTTCTAG
GACCATACTTGACTAACTTTCATGGGTCTCTCCAGTACGTTTTCAATGAC
TTTTTAAACCTTTTGATTTTGACAACTGTAGTCTTTTTAGGCCACACCCA
CTCATCAATGCAAGAATCTCTTATTCTCGGCAAACTTTGAAAGTCTTTGT
GAGGTTTTCAGGATAAACAAGTCCGAAACATACCATTTAACCATTTAAAA
TTGCTTTATAAGAGGAACTGTGAATCGCACAGTTAGTCTTGACCACAATA
AAGACTATGAAGTTTCCTTTTATCGCCAAATGGAACAAATATAAAAGATA
GTTATAGCATTCTCCTTGTATCAAACTAAATTTTGACTCTGGTCAAAGGG
GTTGTATTTTTTGATTGAGCAAAGTAGATAGCGTTGAGGACATTTTTCAA
AAAAAAATATTTTGGAAGTTCTAATTCTATCGGATTTGAAGTGTAAGTAT
ACTCTTGTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAACTTTT
TTTAACAACAACAAAAAAGAAACTTTAGCAAATGAACACGTAAAATAAGA
ACCAATACTAACAAAAAAGGAAAATTTTAATACGTTTAAGGTCTATCTAC
ACTTTAATAAAATATTGAACTATTCGAATTTAATTGGCGGGGGGGACGTC
TATTCGGGAGACAAGAGTAGGTAAGGTAATGCTATTAGCCACATTTTATC
ATGTGATTCAATTTTGATGATTTAACTTTTGACAACAATAGTTTTGTCAT
CAGCAGTTCATAGGGTTACTGTGAAAGAAGATTGTAGATTTCTTTTTTGA
AATTGCGGGGATTGTTGGCTATGTAGACGACATATCTCACCGCACATTGT
TAATTTTATCCTGTAACATCGACAAAGATTTTTCATAATTTATCACTGTC
AGAATTGTGTAAATTATTCAAAATAATTGTTACGAATAAATTCTCTAATC
ACCGAAAAACATCAGATGTTGACAACTTTCAAACTAGTCAACAATCATTC
CTCTAAATACGGAAACATGCAATCACGTCATACAGTAGGAAAAAAACTTT
CATAATTAAGGAGGTTATTTAGTGGCTTTTTCAGGAAGAAATACCGAAAT
TAAGCAGATAGTCATTAAAAATATACTCATTATATGCAAAATGTTTTACT
GTATTTAGAGCATGGTGCCACATTGGCTTTTGATTATTTTGTTCTAGAGA
GGGGAGTGACTGTTGGATATGAACGGTGTTCTGCGTAATGTGATATGATG
ATATCTATGTTGTCGAACGATTTGAGGGTTTTATTAAGTCGAGGAATGAA
TACATAATCAAAATATTGAATTGATGAAGTGATTGAATGAATTTAGCCAT
GAAAATTTTTAATGATTGTGGTTAGAGTCTGATGCCACACTACGTTGTTT
GAGGGTCCATCTAATGTCTACAACACCCATCTTACATCTTTGACGTTGAT
TGGACGTTAAATGAACGTTGAAACAACGCCGTGTGTCAGTTGGGAGTTTG
TATAAGGCATCTTTGTTGAGTCAACATCAGTATTAGGCATTAAAATTTGA
ATAAGGTATTTTCTGTTGGAAAAAGTTTTGCTAAAAGTTAACTACTAACC
TTTGAAAACTTCAAACTATTTTGACAAAAACTCGCCAAAATAAAAACTTT
TGAAACTATGCAAAGTTTTTGGGTCACCTATTAGAATATCTCATCTTTGT
TTCCCAGGTACAACAAACTTCACTCGAAGAAAACAACACAAACGTCGCCA
TGTTGGATCGAAATGAACGGGACCGAAAACCTCGATCGAACGGTCGTTAC
TTCAATAAGCAACGTGCACAACAATACTCTCCAACCTCCACCGACACTGG
ATTGTCCGGATCTCCACCGTATGTAAACGGAATTAACGGAAGCCGGACTA
ATCTTACAAATGGCTACAAACCATCCTACTCGCCGACATCTACTGATGCT
GAATCAGTCTCACCCTTACCTTCAAATGGGTGGGATTTTTCAGAGCTCGA
AATGCGCTACACATCAATGATAAATAGCCTAAAAGACGAACTTTCTTTTC
TTGAAGAATCAAACACCAATCTACTTACGGAGCTACGAGAAAGTCAAAAC
TCGAATTACGTATTAACGGAAGAAATTCGACGTCAGCAACGTAACAACTT
AAGTACGTTAGATGAGTTACAAGCGTGCCAAACAGCAAATTCAGTTCTGA
GACAGGAGTTGCAACGTCTTGAGCAATCCAGCGTTAAAATGTCCAGAGAT
TCTGAAAAATACAAGAAGGCGAACTCGATGCTTAAAGATGAGATCAAAGA
CCTCAAAGCTCATAACTATAAACGTAAAAACAGTATGGTTACACTCAAAG
AGAAAGCTATTGATCTACAAAATGACATTCTAGAAAAAGAGAAGGATTTC
AAAGATTTGTCATCTCTCAAACAAACTGTCAATATAATAGTCGAAGCGGT
CGAAAACGATTCTAACATCGATAACGGCTATTTCCCAACCGATTCGGACA
TTTCTAGTAACGATGGCAACGATGATAAACAATTGGGTGCTTTCACTCCA
AAACCGGTAAAAAAATCGGATACTTTCTCAAGTTCTTTGCCTTCACCTCT
AGCAAGGAAATTCTTTGCACATCAAAACGGGGGTAAATCTCCATTACTGA
GACGAAAACAGAAAGACAAATACAACACTGACCTGACTGAACGATCTCGC
TCGAGATCCTTGAACGTGACTTCTGGGGAAAGCCGGGACGAAAGTCCCTC
TCCTCCCCATTACAACGGTCCCTCATCCGGCCCTTTACCGGCGGCTGGGG
ACCGACGACGAGGGTCTCTTGATAGTTTTCATCAGAATAAGGACTTGAAA
GAGACCTCTCTTCGTAACAATACTTTGACACGACAGTTAGGGAAATCCCT
TGAACGACTTCACGATCATAAAATCAAACGATCGGAGTCGGGGAATCGCC
CACGTAGTATGACGTTTGACGATCGACATAACGATAAAATGACGGATGAC
TTTTCTTACGTCGTAAAAGGTAATGTTTAATGACTATGACATGACGGAAC
TGACGAATCGTTTTTATAGAAAATCTACGTTTATTTGTTTCAACAAGCTT
ATAGTGACTACCGCATGTTTTTCAGACGTGTAGGGCTGCAATACACATAT
TTCCTATTAGCAGATTCATGCAAAAGTCACGAAAGACGTCGAGTAAACAA
ACTTTTGATTGGCGGAGGGATGCAAAGATTACCTCTTACATGGACAATTT
GAAAAAATATGCTTGTATGTGCAATATTTCAGCCAATCAGAGACTTTCTC
GACGTTTTTCGTGACTTTTTTACACGAATCCGCTAATAGGAAATAGGTGT
ATTCCCTTTATCAACCTTCGTATAAAGAAATCGATTTAAGCTCCCCTGCT
AGGCATTTTCGTACCCAGAGTCTCTTACACCACTTTTTGATTGTGCTGAT
GGATGTGATACAATCGTGAACGCTATTAGATTCATCGAAAAAGCGAAATA
AGGGACTGGGTTCGAGTCTACCTATTTTCTAAATGCAAAACTTTTCATGA
TCTTATAACTGAATGTTCTTCAATTTTTAATGCTCTTGTGTTCTTATAAG
TAAATGTTCCTTCTTTGACTTTTAACGTTATATATAACTAACTACAGTTG
ACTTTCTCTAATTCGATCTCAAAGCACAAAATATTATCTTCGAATTAGAG
AACGATTCGAATTACAGAGAGTAATTTATTTCATTCTCAAGCCGGGGGAC
CAATGTTTTAGTTTTAGTTTCGAAAAAACTTAAATAATAGGAGTTCGAAC
TAGAGAGAATTGACTGAAGAAAAATGGTCTACCTTTTCGATGTTTTATCT
AAAAATATGTTCTGTATTTGATGTTCTTTTAGGTGAAAGTATTGGAACGA
TCAACTCTGCTTCTCCCGAGCAAGGAACCTTTGAGCTCTAACATTTCATC
TTCCGCGTACGTCTGAAGAAACGATTTAAGTGGATGCCTAACTCGGATAC
TACTTTGAATTAATACACCCAGGACGTGTATCTTCGAGCTCTAACATCTC
TTCCATTGAGAATGTACAACCATAACAAGCCAAGATGTTGTTTGGACGTT
ATATTAGCGTTCTTTTAACGAATAATGCTCAGGCGAGAAATAATCTAACA
TTTCAAATGTTCTAACATTAATTTGTAGAAGGACTTCAAAGAGACTGACA
TATGAACAATAAATGAACATGTTACATCTTGGCTCCCGAAACAACGGATT
TAATACACAACGTCCCGCAATATCAATCTAACGTCGTACAGATCTTTTTC
GATGGATATTGTTAATGTAGGATCACTAGGAAGGCACTCATTAACTCAAA
AATTATTTGTACGCTTGTATGCGTAGCATCAATGAAGTCTTTAGTTAGAA
GACATTTTTATCTGTACGAAAATATATCTCTAAAGCGTTCACCATACTTG
GAAATGTATCTGGAAATTATCACAACTACTGCTGTAAAAATACTACTACG
AACCGTAAAAATGATCAAGAAGTGAAGTCTGATAGACTTTTCAATGGCAA
AACAGACCAATAAAATTTTACAACTTTTTACTACAGTTTTGCGTGTTTTT
GTCTTTAAAAATAATATCTAAATATCTTTTAAAAACCTTCTATAAGAATA
CCCACGTATTTTTACTTGGCAATATACTAAGAACATATTTGACTTAAGAA
TTTTGTAAAATATTGTTATTTTCTACAAAACTTTGAAACATACTAGAAAA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030795XLOC_030795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048404-exon-scaffold_142-1575043694:876572..876670TCONS_00048404-exon-scaffold_142-1575043694:876572..876670Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1575043694:872915..873763TCONS_00048404-exon-scaffold_142-1575043694:872915..873763Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1575043694:870718..871588TCONS_00048404-exon-scaffold_142-1575043694:870718..871588Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1510915933:876572..876670TCONS_00048404-exon-scaffold_142-1510915933:876572..876670Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1510915933:872915..873763TCONS_00048404-exon-scaffold_142-1510915933:872915..873763Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1510915933:870718..871588TCONS_00048404-exon-scaffold_142-1510915933:870718..871588Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1491911889:876572..876670TCONS_00048404-exon-scaffold_142-1491911889:876572..876670Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1491911889:872915..873763TCONS_00048404-exon-scaffold_142-1491911889:872915..873763Clytia hemisphaericaexon
TCONS_00048404-exon-scaffold_142-1491911889:870718..871588TCONS_00048404-exon-scaffold_142-1491911889:870718..871588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:870718..876670 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	5.85151e-05	0	0	0	0.228752	0	0	0	0	0	2.3156	1.40715e-05	0	0	0	0	1.6499e-08	0	0.203163	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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