TCONS_00048323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048323
Unique NameTCONS_00048323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048323 ID=TCONS_00048323|Name=TCONS_00048323|organism=Clytia hemisphaerica|type=transcript|length=1400bp
CCCAAATTGAAAAACTCATAGAGAAGGAAAGGGCAAGATTACCAAAAATG
TATTATTGTTGGATACTGATTTCTTTGATAGGACTTGCGCAATGTGACCG
TTGTCAGTACAGTTTGGACTTCCAACAATACGAAGGGTCCACTCACAATG
ATTACGAACATATTACATCTGACGAGTGTATGCAAAAATGCGAAGAGGAC
GCCGATTGCATTGTGGGAAATTGGTTCCCAAAAGATGATCCCTGGGAAGA
GAGAGATCATTCACTTTGTCGTTTATTCAAAAAGAGTGATCACACTTTGA
AGTTTTCTGATGATGGTGATGAAAATACGGAAGCCAAACTGATCCGGTGT
TCTAAGAAAGatgaCATTGATGATATTGAGCGATGTTTTCTGGATGAACG
ATTCACACGACATTGCGGAGCAGCTTTACGATACAGTTACGGCAAGTCGT
ATGAAAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTGCCAAATTGCA
CACTGGCACCCGCCCTATCAAATCTGGGATGACGAGGCTCGATCTGTTTG
CTTcttattttctgaaaatgctgaACGGTGCGATTGGGGTGGAGCAGAAT
TGATTTCATACCACCCTGGTGCTCAAATGATCCGatgcaaagaaaaaaTT
GACACGGAGATACGATGTCATTTCAGCGAAGATCTTCACCGACAATGTGG
AGAATATCACAGTTTGTTGTACGCCTTGACAGCTGAACAATGTCTTCAAA
GATGTGACGAGTCTGCCAACTGTATCACAGgtCACTGGCACCCTCCTCGT
CAGATTTGGAGTGACGAGGCGCGAACAGTATGTTTTTTGTTCAAGAGAGA
CGATATTAATTTACACCCTTGTCCATGGGGCGACGAAGCCAAGAACTCAG
CACACCCAGGAGCCAAGATGATTAGATGTTCAAATAAAAaaaatgggcCA
ATCGAGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGTGGAAACGC
TTTAAAATACATCTATGGTCAAAGCCCTGAATACTGCCGACAATGGTGTA
ATGATAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTTATTCAATA
TGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCATGGGACTCA
AAGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAAAGGAGCTC
ACATGGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTTCTGACCAG
TATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgttttttctt
tatttttctatttttctagcTTTGTATGTATTTAACTATTTGGTATGCTT
CGTAAGAATTTCAAATATACATTTACCATTTAAAAATTGTTGATCAGCTA
Run BLAST on NCBI

transcript from alignment at scaffold_142:892311..895868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048323 ID=TCONS_00048323|Name=TCONS_00048323|organism=Clytia hemisphaerica|type=transcript|length=3558bp|location=Sequence derived from alignment at scaffold_142:892311..895868+ (Clytia hemisphaerica)
CCCAAATTGAAAAACTCATAGAGAAGGAAAGGGCAAGATTACCAAAAATG
TATTATTGTTGGATACTGATTTCTTTGATAGGACTTGGTAAGCTTGATTA
TTCTCACGTTTTTACAACAAAGAAATATTTGATGTTCACTTCCAGGAAAA
AGGCATCATATCATGATTTCACGGGTTATTTTTCAAGGGAATTTCGAATA
TTCTGCAATAAATTGAATTGTAGAGAGTGAAGTTACTGTTCACAATATGA
GAATGATATCTTCATAATAAATAAGTGGTTTCGTGAAACTTTTCCATTTC
TTTCACCTTCAGCGCAATGTGACCGTTGTCAGTACAGTTTGGACTTCCAA
CAATACGAAGGGTCCACTCACAATGATTACGAACATATTACATCTGACGA
GTGTATGCAAAAATGCGAAGAGGACGCCGATTGCATTGTGGGAAATTGGT
TCCCAAAAGATGATCCCTGGGAAGAGAGAGATCATTCACTTTGTCGTTTA
TTCAAAAAGAGTGATCACACTTTGAAGTTTTCTGATGATGGTGATGAAAA
TACGGAAGCCAAACTGATCCGGTGTTCTAAGAAAGGTTTGTAAGATGTGT
CCTTTATACTCCGTTTCCAACCGCTATCAGTGTCAAGCCGGTTTTCCCAA
GAATTTCTGACGGTCCTTTATGACGACCAACATTGATGTAAATAAAATCT
TGGATAGGACAGGGCgagagaaaaagtattttatcGATGAACCAAAGAAT
ACTTCAAGTCCCCGTCCATTTTGATCGCAGAATCTATATACATGACATTT
ATATATGTAAGAATCTTTATTGTAAAGACCTTATAAAGCTACCagtttga
ttaaattttttttttattagatgaCATTGATGATATTGAGCGATGTTTTC
TGGATGAACGATTCACACGACATTGCGGAGCAGCTTTACGATACAGTTAC
GGCAAGTCGTATGAAAATTGTCGCCAGGAGTGTAACGACCGTGCCGATTG
CCAAATTGCACACTGGCACCCGCCCTATCAAATCTGGGATGACGAGGCTC
GATCTGTTTGCTTcttattttctgaaaatgctgaACGGTGCGATTGGGGT
GGAGCAGAATTGATTTCATACCACCCTGGTGCTCAAATGATCCGatgcaa
agaaaaaagtaagaaaatttttttatgaatttctaTATGTACATTATCTT
TTCCGATTTTTCTGGAAACACAGTACTTCTTTTTAGCTAAGAAAAGTCCA
TAAACTGCAATCGGCGTCGAAATATATTAGCACTTTtaggtattttaacg
tttttcagaatttaaagatcggGTGAGAGTTGCAacttcagtacttccac
tttgtttcattggatttttcgatttggaaGGCGTTAAAGTggtttccagg
ctatattctcagccttattagaacatttttgagtatatttttgagtctta
agtctcatgttaaaactcagagttaaaactttcCAACCGTACTTTAAAGT
AGTTAAAAATTACTTGCAGTTTTCaaatttgagggaattcccattttgtg
ccaaatattacgGTGGGGATTGTGGTcgattttgacgattttgacGCTAT
ACAATTATTGGACACAATATATCCAAAACAACTGAAAATGGTCTATATCT
CTTCTTATGGTTTGTAGTTGACACGGAGATACGATGTCATTTCAGCGAAG
ATCTTCACCGACAATGTGGAGAATATCACAGTTTGTTGTACGCCTTGACA
GCTGAACAATGTCTTCAAAGATGTGACGAGTCTGCCAACTGTATCACAGg
tacgacgttgtttcaacgtccatttaacgttatatggatgttgtgaatat
tagaaaaacgttgaaacgacgttgtgtatCAGCTGGGAGAAAAGAATCAT
TGAGATTTGCACCTTGAAATCGTTGATTGCTAGCATATCATTTAGCTTTT
CTTGTCTCTTTCCACAATCTGCAGCGGGCTCAATCAGACTGATTCAGGAC
TAAAGAAATTAAAATCTCACTCCCTCTCCTTCCATCATAGACCCACttgg
accccagccccactggaaaaataccTTACAATCTCATTCCCAGTGGGGaa
tcgactttgatttcatccccattcaaaatttaatgtaaaaaattgcactc
caaaaccatccccacggATTTTTTGACttgggaacaatagaatttttatc
ccattgggtttttcttcttttttttctttttttcaccggggctttgagac
aggggtgtatatatGAAGAATTCTCGCAtaactttgttttgtttttaagg
tCACTGGCACCCTCCTCGTCAGATTTGGAGTGACGAGGCGCGAACAGTAT
GTTTTTTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGC
GACGAAGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTC
AAATAAAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaat
taccTTACAGTTATAGAAAATAAggaacatcataagaacattttatttgT
AACGTTTGTTTATAAAGTCTGTTTGCAACGATATTCTTATCGCCACCAAT
CTTATTGGTAGaaaaagatgtcacatgactttccgtggtaaagaatgaaa
attgcattcctttttttttcagaaaatgggcCAATCGAGAGATGTACCAT
GAGCTACGATTTTTTGCGTCATTGTGGAAACGCTTTAAAATACATCTATG
GTCAAAGCCCTGAATACTGCCGACAATGGTGTAATGANACAGTATGTTTT
TTGTTCAAGAGAGACGATATTAATTTACACCCTTGTCCATGGGGCGACGA
AGCCAAGAACTCAGCACACCCAGGAGCCAAGATGATTAGATGTTCAAATA
AAAGTAAGGAGATGTTTTACCTGTTtttaaaacaacaacaaaaattaccT
TACAGTTATAGAAAATAAggaacatcataagaacatttttgtaaCGTTTG
TTTATAAAGTCTGTTCGCCACCAATCTTATTGGTAGaaaaagatgtcaca
tgactttccgtggtaaagaatgaaaattgcattcctttttttttcagaaa
atgggcCAATCGAGAGATGTACCATGAGCTACGATTTTTTGCGTCATTGT
GGAAACGCTTTAAAATACATCTATGGTCAAAGCCCTGAATACTGCCGACA
ATGGTGTAATGATAATAAGAAGTGCCATGTAGCACACTGGCATCCACCTT
ATTCAATATGGGGCGATGAAGCTCGCTCGGTTTGTTTCGTGTTTCCCCAT
GGGACTCAAAGTTGTGATTGGGGTGGTGCAGAACTGGGAGATTACCATAA
AGGAGCTCACATGGTTCGATGCATGTACCAAGAATAGCTTACTAAGCTTT
CTGACCAGTATTTTTTTAAGGCCTGTATATATGGGAAAcgtgaaaaacgt
tttttctttatttttctatttttctagcTTTGTATGTATTTAACTATTTG
GTATGCTTCGTAAGAATTTCAAATATACATTTACCATTTAAAAATTGTTG
ATCAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030756XLOC_030756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048323-exon-scaffold_142-1491911889:892311..892397TCONS_00048323-exon-scaffold_142-1491911889:892311..892397Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:892311..892397TCONS_00048323-exon-scaffold_142-1510915933:892311..892397Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:892311..892397TCONS_00048323-exon-scaffold_142-1575043694:892311..892397Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1491911889:892623..892895TCONS_00048323-exon-scaffold_142-1491911889:892623..892895Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:892623..892895TCONS_00048323-exon-scaffold_142-1510915933:892623..892895Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:892623..892895TCONS_00048323-exon-scaffold_142-1575043694:892623..892895Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1491911889:893181..893468TCONS_00048323-exon-scaffold_142-1491911889:893181..893468Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:893181..893468TCONS_00048323-exon-scaffold_142-1510915933:893181..893468Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:893181..893468TCONS_00048323-exon-scaffold_142-1575043694:893181..893468Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1491911889:893978..894109TCONS_00048323-exon-scaffold_142-1491911889:893978..894109Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:893978..894109TCONS_00048323-exon-scaffold_142-1510915933:893978..894109Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:893978..894109TCONS_00048323-exon-scaffold_142-1575043694:893978..894109Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1491911889:894610..894768TCONS_00048323-exon-scaffold_142-1491911889:894610..894768Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:894610..894768TCONS_00048323-exon-scaffold_142-1510915933:894610..894768Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:894610..894768TCONS_00048323-exon-scaffold_142-1575043694:894610..894768Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1491911889:895408..895868TCONS_00048323-exon-scaffold_142-1491911889:895408..895868Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1510915933:895408..895868TCONS_00048323-exon-scaffold_142-1510915933:895408..895868Clytia hemisphaericaexon
TCONS_00048323-exon-scaffold_142-1575043694:895408..895868TCONS_00048323-exon-scaffold_142-1575043694:895408..895868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:892311..895868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0184947	0.711681	0.00483164	0.00438692	30.4866	23.8494	48.0057	29.28	39.3413	89.0685	54.1588	54.4454	2.2245	0.00982909	0.00590355	0	0.00393973	0.00264337	0.0102486	0.0011683	0	0	0.00450754	0.00272969	0	0.0011328	0.00130459	0	0	0.00263214
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top