TCONS_00048332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048332
Unique NameTCONS_00048332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048332 ID=TCONS_00048332|Name=TCONS_00048332|organism=Clytia hemisphaerica|type=transcript|length=912bp
GTTTTGTTAGATCCCAGTCTTTTTTCCAAGATATATGATTTTTCTTCTCC
GTTACGCTTTTTTTTCCAACTCTTGACCATTcgttaacaaaaaaatatac
accACGGAGAAGAGCGACAGAACATTGCGCGTCTGATATCGAAAGTGTTT
TATTCTGTGAAATTTTCGAAGAATAGGCGTCTGgggatttttcaggaaaa
aacgTCCAAAGGAAGAACCACTAAAAAGCAACTTGCCCATCATCACTATA
ACAATATGCCTTGCAAACAACTTGGTTGTGAGTCCGTCACTGAACTCCTT
TCTTTAATTGAGAAAGAATGCAAAGATGCCAGCAATATTTTTGTGCTTTG
CACTGGTGCAGAAGATCCTACAACTGGAAAAAGTTGGTGTCCTGATTGTG
TGAAAGCGGAACCAGTGATCGAAAACTGTTTGAAGTCCTCTAAAGATACA
GATGTCTTCATTGTAGCCATTGCAGGAGACAGGCCAATATGGAAGAATCC
TGACAATGAATTTCGAAAGCATCCAAAGACACTCTTGAAGTCCATTCCAA
CACTCATTAAATGGGGAACGCCTGAACGATTAAGTGAAGGACAATGTTCG
GATGCCAACCTAGTTTCTATGATGCTGGAAGAAGATTAGAAGAATGGCTG
CTGGAAAGtaacttatttttgaaaatataaacttttGGTTTCAAACCTTT
TTGCATGAAATGCTGCAATTGTCTTGAAATGTTTCCTTCGAATGTTGATC
GGTATTGGTGGTAATGTAAACGATCATTTTTTGTGACATTTTATTTACta
gaaaatattgtttttttaatttttgcaacAACGtgggatttttttatttg
aattattattagaaattttaaatttaaagatAATATGGAGGGAGATTCTG
ATTTAAATAAAG
Run BLAST on NCBI

protein sequence of TCONS_00048332-protein

>TCONS_00048332-protein ID=TCONS_00048332-protein|Name=TCONS_00048332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MPCKQLGCESVTELLSLIEKECKDASNIFVLCTGAEDPTTGKSWCPDCVK
AEPVIENCLKSSKDTDVFIVAIAGDRPIWKNPDNEFRKHPKTLLKSIPTL
IKWGTPERLSEGQCSDANLVSMMLEED
Run BLAST on NCBI

transcript from alignment at scaffold_142:955882..968611+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048332 ID=TCONS_00048332|Name=TCONS_00048332|organism=Clytia hemisphaerica|type=transcript|length=12730bp|location=Sequence derived from alignment at scaffold_142:955882..968611+ (Clytia hemisphaerica)
GTTTTGTTAGATCCCAGTCTTTTTTCCAAGATATATGATTTTTCTTCTCC GTTACGCTTTTTTTTCCAACTCTTGACCATTcgttaacaaaaaaatatac accACGGAGAAGAGCGACAGAACATTGCGCGTCTGATATCGAAAGTGTTT TATTCTGTGAAATTTTCGAAGAATAGGCGTCTGgggatttttcaggaaaa aacgTCCAAAGGAAGAACCACTAAAAAGCAACTTGCCCATCATCACTATA ACAATATGCCTTGCAAACAACTTGGTTGTGAGTCCGTCACTGAACTCCTT TCTTTAATTGAGAAAGAATGCAAAGATGCCAGCAATATTTTTGTGCTTTG CACTGGTGCAGAAGATCCTACAACTGGAAAAAGTTGGTGTCCTGATTGTG TGAAAGGTATATATTTTAGATTTAACTTTTGAATGGAATAGTCAGGAAGC TTAGTTCATTCAAAATAGTACAGTAGCCACAGTAGGTAGGAATTTACAAA GAAACTCCTgttatatagaccttttttcaaagaggccaccctgttgaata attatgtagtccagcagaaaaagaatgataaaaccatgcataattattac aatatgcatgatacagtaattatgcatggctctatcgttgtttttatggc tggactacataattattcaacaggacgtcctctttgaaaaaaggtctata ccgTGAGtagtcctaaatccgacagccctgcctaaatccgatggggtctt tcaaagatacaaactaaaataaaaacgaaactttcgctgtgacgcaatga agataccaaagtgtcaactaaactgagagatttgatacactgaaccaatt gaaccataTAACAATAATTGNatttatgtaatgggagtttgacatagtaa tataatgttgtttggggaattatgaagttctctggaattccgattgcatt tattcaggttgatttttttataacttctagtggtactttttctaacgagt ttgattactctgttctcacacttatgtctttttttttcgcgtcctttttc gtgattacttttatttatatttttaaagacaggtaagaaggcatattgat gtaactgccaatTGAACCatataacaataattgcttcttatacaaaacat aattttttattacaaaattgttaacattttaaacacgagcaacggattca gaataatacCGTAGAGGTAAtcatttttacaactcacactttttcaATCA CAATAATTGactcttgacattatagtcatcttgttagatgttttgtttcg cgagagttcttgcaatagtttattgttcaacttggagagggaatgtttat aaacatagaattttttttcatagcagttatttggggggtcggatctagga ccactcacggtaagtTGTTCCAGgtagtattttttattttcatctcttta ATCACTCTTTCAggtagtcacactagcgtcccgccaaaatgcatatcaaa gattaatgctgcgagagcgctatatcgtttacttgactctcaagcaaaaa aatgctttatactttagcgtataaacaaggccttaaaaatcaaagcgctg tctcgggaattgttCAGTATTTAAAAAATAGAAGGTCTCTGAATGCTTTT TTGAGGGTTTCATTTGCAAAAACGAGgggtaaaatattgaaaaaatacga tatttttattaaagtttcaaaatttcaatttgaaatcaTTTACAAATGGG ATCTACCATAAAAGCTTAGAAGTATACATGCTTTCTTTAATTACCAAACA GGGcgtaaaaaagaacaattcCTATTTCANAATAAGATATTTTTattaaa gtttcaaaatttcaatttgaaatcaTTTACAAATGGGATCTACCATAAAA GCTTAGAAGTATACATGCTTTCTTTAATTACCAAACAGGGcgtaaaaaag aacaattcCTATTTCAGAAATTATGccctattgaataaaaaagttatttt ctgaaagtgctcaaaaacaaaaaaatcaacctatcttttgatctaatgaa tcgaatttaaaatgacccatcaaattttaagtttatctttcttctttcca atgaaataagaatggttcttttaaaatttttagattttgagaaaattagt tttaaagagagaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNAATAAGATATTTTTattaaagtttcaaaatttca atttgaaatcaTTTACAAATGGGATCTACCATAAAAGCTTAGAAGTATAC ATGCTTTCTTTAATTACCAAACAGGGcgtaaaaaagaacaattcCTATTT CAGAAATTATGccctattgaataaaaaagttattttctgaaagtgctcaa aaacaataaaaatcaacctatcttttgatctaatgaatcgaatttaaaat gacacatcaaattttaagtttatctttcttctttccaatgaaataagaat ggttcttttaaaatttttagattttgagaaaattagttttaaagagagaa acttttttgttgcGCACCCGTTATATCattcggctagttcgaaacacggg tcacgggttacgggtcacgggttacggggcacggggtacgggtcacgggg cacggggcatacaatttacagaccggaaaaaatataacgatatcatgacg tataattcatAACACGCACTACATAACACATATAATAGTACTAATACTAC TAGTATAGTATGTCTGAAACAATTATATACGAATAGTATTATCATGAAAA TTTTTAAATAACATGTCatccacaaattttgacaaaataatattgaatga caaaaatattgtcaaaatcatgaaatataaggcctctgaaccaatttaca gcaaaatatcttttcatactcaataggatgctaatcatgtgactggatat agattgacatgttttaaaacgattaaaggggaattaacgtttggaattaa ccctgagattttttttcgaaacattaaagaggaagaaaaatgtgatcgaa caaaaaaagaaccactTCATAATGNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNAGCTTattatatgtatgtaatatgttgcggtgttttctggtct gcattatACACGACGCAAACTTCGAAAGCACGTGGAAAGCACGTGGTTAG GTTTTAGCTTTTTAAATTGTCATACGTGGATGAAataccttaaaattgat ttttttgataacttttagtgtttttaaaacattttctgattgaattactt tgatctgagctgccccgtcaccccgtgacccgtgccccgtaacccgtgcc ccgtgacccggacctgtgacccgtgacccgtgtttcgaactagccgtatA TCATTTCTTGCATGCTTGAATTCAAAACCCTGACCTAGAAGGGCTGATTA TAGCTGACAAGAGGGACTGGATTGCTTTTATTAAGACAGTTGCTCCATGA CACTTTAATGAATAACTAAGGTTTTCGGAAAATCTTTGTCAaaccaccac ctccaccacttACTCCATTGTGGAGCAAAATCAAGGGGTTAAGGGGAGTT AGAATCATTCttggtgaaattttcaaattatcaaaagTACATTTGACttt tcttggaaatttttctGGAACGAGACGAATAATGATCTTCAGATCAAAAA AAgatgagtctgctaaatgacgtacccacgtgccctcatttttttgacgt gccttTGTGCCCTACGTGCCTTCGTGCTCGCGTGCCTTACGTGCCCAACG TGCCTACGTGCTCGCGTGCCTTGACGTGCTTACGTGCCTACGTGCCCTCT GAAATTTTACGTACCCGACGTGTCTGCGTGCTTGCGTGCCTAAAgatttg acgtgccctcaagttttgacgtgccctcaaattttgacgtgccctcaaat tttgatgtgccctcaaattttgatgtgccctcaaatttcgacgtgccctc aaattttgatgtgccctcaaattttaatgttcccttgaattttgacgtgc ccttgaattttgacgtgccctcgaattttgacgtgccctcaaatttctac gtgccctcaaatttcgacgtgccctcaaattttgatgtgccctcaaattt tgatgtGCCCttgaattttgacgtgccctcgaattttgacgtgccctcga attttgacgtgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactttttg cgatttttgtGTGCAAAACGAGGAACAGTTTAACTTCACAGAAGAATTCA TAGGAGAGGGACGAAATGTCTTCTGATAATGAATCATCAAGGtggggcac gtcaaaattcgagggcacgtcaaaatttgagggcaagtcaaaatttgagg gcacgacaaaattcgagggcacatcaaaatttgaggggaacgtcaaaatt tgagggcacgtcaaaacttgagggcacgtcaaaatttgagggcacgtcaa accttgagggcacgtcaaaatttgagggcacgtcaaaatttgagggcaag tcaaaattcgagggcacatcaaaattcgagggcacgtcaaaattcgaggg cacgtcaaaactttgggCACGCAAGCAAGTAAGCACGTAGGCACGTCGGG CATGTAAAATTTCGGAGGGCACGTAAAATTTTGGAGGGCACGTAAAATTT TGAAGGGCACGTAGATACGTAAGCACGCGAGCACGCGAGCACGTCAAGGC ACGTaaggcacgaaggcacgtaaggcacgtaaaaaaaatgagggcacgtg ggcacctcatttagcagactcaaaaAAGATTTGGTGACTCTAAAGTCTAA TTTGTAGTGTTTTTCATAAGCTAATATCTCATTTTGGTTCcatatcaaaa atcattttaggTGCCATGGAAGTTAAAATCAGTCTGAGTGAAATTTttag ccattatggattttcagaccaaaatttTGGTATAACTCAGATCATTATAC TTGAAAActtattggaaaataaaaagatcTAACTTCCAAACTACTAAACC CCATACTCCCATATTCTTAAAAACTAGCTCTAACCCACTTTACAAttgat cttttttaaatattcttaattttgttTATTACAGCGGAACCAGTGATCGA AAACTGTTTGAAGTCCTCTAAAGATACAGATGTCTTCATTGTAGCCATTG CAGGAGACAGGCCAATGTAAGTTCTTTTATGTAAAATTAACGTGTCCAGA AAGAAAGTAACAGAATTCCACAAAATGAAATCCGTAACTCAATCATCTAA TCCTAGTGTCATAACAATTTCAAttgcaaataaattttttttttgtaaaa caaaaTCCAATAATTAGGTCTTAAAAATTGGCTAAAAGaggatttttctt tataaaaattctgtttggcttttttcaaacaTACTGTATTGATCAAATGG AGTACTGCAGTAATTACAAAATTTATAGAACATCACATGTGCTATTTCTC CGCTGCAACACAGGGTCTGCCTACTATTAGTCTTAAAACTCTCTCAGTAA CTTTGAATATTTGTATTGAATTGATATATTGAGGAAGTTATTTGAGATTA ATTTCAGCTATTTCACTTTAGGCCTGAAAACTATATTCAGTGTAAATGTA AATATAATGTACAGTAGATTGATAAATGATATATCTGAGGCTCTTCTTAG GACTATGTAACTGACATTAGGTCAACCATGATAAAAATCCTAAAGTTAGA AatcctaaagtctgtctcaaaataatttgcagcagAGATAAAAAAGGCTG TGAATTTGGATCGAACTAGTATTGAATAGTGGTTTtgtgtttgttgaaaa gataaacaggagtggaatattatcaaaaaagaaaaaaaattcaaaagata ttggataataaagattgaaaataataaaggaaaaatcaacttcttcaata actGCGCTCTCATAATCATTTTCGGACGAGTGATTCATTGATTTAAAACA TCATTAATgtgaaaatatctttcaaaaaattttgtacAATCTAAAGATAT ATCCCAAAGTTAACCACTGATTGACGTTTGACGATTGACGCATctatgac gttctaagattgaagagcttGTGATGTGAAAATGGAGATCATATAGCACT ATTCAAtgagaagttgattttcttctccgtccttttttatcttttttttt tcatttttcttttttgatgataTTCCACTCTGGATTATCTTTTTAATGGG CACAAAACTGCTATCCTATTAAAAGATATAGATATAgattttgtctcagc tgcagaCTATATTGAGACAAACTTTAATACCAATTTAAATTGGAGAACAA TTGTTGAGCtgaaaaaatgatcaaaaacaaGAGAAACTAATGACATATCC TCTACATGTTTTTCATAAGcgtaacgcttataagcatacgaaGGCTCAGC TTCGCAGATTTCCTAATCCTAACATAGGTATACACACTAGCCTGGGATAT TTaattatgttaatttttttctgttctAACACACAGTGCATCCCACTGCT TCAAAAAGGTATGgaagtggtcaagtaaaaaataaaacattccaCGACTA GTCACATTCCACTACTTCCATAATTCGAAAGTTCTACCCTAAGCTAAATT CACTATATGAGCATATACCACATAGAAAAATCCTTACTTCATAAGGACAT TATATAACCATAGGCTCAGCCTGGATGGTTCAAAAGCTTTAACACGAGCC TGATCAAGCGGGCAGACACTTGTtgtttataacaaaacataataCTCTAA GTGAAAACTAGAGAGATTAATTTCACAATTTCAACAATAATTAATTCACC TCTCTTTTCAAGATGGAAGAATCCTGACAATGAATTTCGAAAGCATCCAA AGACACTCTTGAAGTCCATTCCAACACTCATTAAATGGGGAACGGTAAGT GATGATCTGGCTATTGGGTTATTGAATCCATttaatatccatacaggggg agtggacgaaccttttcaaccaagaaaaattcttaaaaatgtgTAGATAG CCTCtgaaaaaagagcaaaaaaaaatccttatCTTCATTCGTtcttaaag tgagggtgaaCGAACTGAAATCAGTCTTCCACCCCTTGGAAATCTGAGAC TTCTTCttcattgaaaaaatgaagaatccTTAGACCCTATGGAAATTCAT CTAGAATtaacccccctggaaatgtctgtccccctgtatggatatagaAT GGAATGATCTATTATCAAAAGTATACACTGTCAAAAGCGTATAATTAATT CAGAAACTCTCGCCTGGAACTGGCAAAGAATATCTCTTGTTTGAAAATCG ATGACACACTGATGGTAGTTGTTGTACTGTTTATGATCGTACTAccgtca actctctctaattcgaacctctattatttgaatctttctgtaattcgaac taaaatattggttccCTCAGCTGACAAAGTGGTtcaaattactctctgta attcgaatctttcgttaagaaatttttagttcattaaagatcgaattaga gagagacgACTAATTGTTGAATTTATATTCTTTTGAAGCCTGAACGATTA AGTGAAGGACAATGTTCGGATGCCAACCTAGTTTCTATGATGCTGGAAGA AGATTAGAAGAATGGCTGCTGGAAAGtaacttatttttgaaaatataaac ttttGGTTTCAAACCTTTTTGCATGAAATGCTGCAATTGTCTTGAAATGT TTCCTTCGAATGTTGATCGGTATTGGTGGTAATGTAAACGATCATTTTTT GTGACATTTTATTTACtagaaaatattgtttttttaatttttgcaacAAC GtgggatttttttatttgaattattattagaaattttaaatttaaagatA ATATGGAGGGAGATTCTGATTTAAATAAAG

Coding sequence (CDS) from alignment at scaffold_142:955882..968611+

>TCONS_00048332 ID=TCONS_00048332|Name=TCONS_00048332|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_142:955882..968611+ (Clytia hemisphaerica)
ATGCCTTGCAAACAACTTGGTTGTGAGTCCGTCACTGAACTCCTTTCTTT
AATTGAGAAAGAATGCAAAGATGCCAGCAATATTTTTGTGCTTTGCACTG
GTGCAGAAGATCCTACAACTGGAAAAAGTTGGTGTCCTGATTGTGTGAAA
GCGGAACCAGTGATCGAAAACTGTTTGAAGTCCTCTAAAGATACAGATGT
CTTCATTGTAGCCATTGCAGGAGACAGGCCAATATGGAAGAATCCTGACA
ATGAATTTCGAAAGCATCCAAAGACACTCTTGAAGTCCATTCCAACACTC
ATTAAATGGGGAACGCCTGAACGATTAAGTGAAGGACAATGTTCGGATGC
CAACCTAGTTTCTATGATGCTGGAAGAAGATTAGATGCCTTGCAAACAAC
TTGGTTGTGAGTCCGTCACTGAACTCCTTTCTTTAATTGAGAAAGAATGC
AAAGATGCCAGCAATATTTTTGTGCTTTGCACTGGTGCAGAAGATCCTAC
AACTGGAAAAAGTTGGTGTCCTGATTGTGTGAAAGCGGAACCAGTGATCG
AAAACTGTTTGAAGTCCTCTAAAGATACAGATGTCTTCATTGTAGCCATT
GCAGGAGACAGGCCAATATGGAAGAATCCTGACAATGAATTTCGAAAGCA
TCCAAAGACACTCTTGAAGTCCATTCCAACACTCATTAAATGGGGAACGC
CTGAACGATTAAGTGAAGGACAATGTTCGGATGCCAACCTAGTTTCTATG
ATGCTGGAAGAAGATTAGATGCCTTGCAAACAACTTGGTTGTGAGTCCGT
CACTGAACTCCTTTCTTTAATTGAGAAAGAATGCAAAGATGCCAGCAATA
TTTTTGTGCTTTGCACTGGTGCAGAAGATCCTACAACTGGAAAAAGTTGG
TGTCCTGATTGTGTGAAAGCGGAACCAGTGATCGAAAACTGTTTGAAGTC
CTCTAAAGATACAGATGTCTTCATTGTAGCCATTGCAGGAGACAGGCCAA
TATGGAAGAATCCTGACAATGAATTTCGAAAGCATCCAAAGACACTCTTG
AAGTCCATTCCAACACTCATTAAATGGGGAACGCCTGAACGATTAAGTGA
AGGACAATGTTCGGATGCCAACCTAGTTTCTATGATGCTGGAAGAAGATT
AGATGCCTTGCAAACAACTTGGTTGTGAGTCCGTCACTGAACTCCTTTCT
TTAATTGAGAAAGAATGCAAAGATGCCAGCAATATTTTTGTGCTTTGCAC
TGGTGCAGAAGATCCTACAACTGGAAAAAGTTGGTGTCCTGATTGTGTGA
AAGCGGAACCAGTGATCGAAAACTGTTTGAAGTCCTCTAAAGATACAGAT
GTCTTCATTGTAGCCATTGCAGGAGACAGGCCAATATGGAAGAATCCTGA
CAATGAATTTCGAAAGCATCCAAAGACACTCTTGAAGTCCATTCCAACAC
TCATTAAATGGGGAACGCCTGAACGATTAAGTGAAGGACAATGTTCGGAT
GCCAACCTAGTTTCTATGATGCTGGAAGAAGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030758XLOC_030758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048332-exon-scaffold_142-1491911889:955882..956287TCONS_00048332-exon-scaffold_142-1491911889:955882..956287Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1510915933:955882..956287TCONS_00048332-exon-scaffold_142-1510915933:955882..956287Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1575043694:955882..956287TCONS_00048332-exon-scaffold_142-1575043694:955882..956287Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1491911889:965816..965897TCONS_00048332-exon-scaffold_142-1491911889:965816..965897Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1510915933:965816..965897TCONS_00048332-exon-scaffold_142-1510915933:965816..965897Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1575043694:965816..965897TCONS_00048332-exon-scaffold_142-1575043694:965816..965897Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1491911889:967544..967625TCONS_00048332-exon-scaffold_142-1491911889:967544..967625Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1510915933:967544..967625TCONS_00048332-exon-scaffold_142-1510915933:967544..967625Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1575043694:967544..967625TCONS_00048332-exon-scaffold_142-1575043694:967544..967625Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1491911889:968270..968611TCONS_00048332-exon-scaffold_142-1491911889:968270..968611Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1510915933:968270..968611TCONS_00048332-exon-scaffold_142-1510915933:968270..968611Clytia hemisphaericaexon
TCONS_00048332-exon-scaffold_142-1575043694:968270..968611TCONS_00048332-exon-scaffold_142-1575043694:968270..968611Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048332-proteinTCONS_00048332-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:955882..968611 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
166.639 173.179 47.7123 34.3803 64.3134 52.9725 86.8125 89.7159 124.774 121.683 102.667 99.7887 58.1655 57.9656 118.007 126.701 113.768 103.445 53.1639 58.6636 68.9453 61.6177 104.328 96.8483 65.5076 66.6848 104.56 79.9809 139.642 109.744
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010357DUF953_thioredox
IPR012336Thioredoxin-like_fold
Blast
BLAST of TCONS_00048332 vs. Swiss-Prot (Human)
Match: TXD17 (Thioredoxin domain-containing protein 17 OS=Homo sapiens GN=TXNDC17 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.941e-28
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1
Query:  316 ECKDASNIFVLCTGAEDPTTGKSWCPDCVKAEPVIENCLKSSKDTDVFIVAIAGDRPIWKNPDNEFRKHPKTLLKSIPTLIKWGTPERLSEGQCSDANLVSMMLEED 636
            E  +   IF   TG++D   GKSWCPDCV+AEPV+   LK   +  VFI    G++P WK+P+N+FRK+ K  + ++PTL+K+GTP++L E +C  ANLV M+  ED
Sbjct:   20 EQHNGKTIFAYFTGSKD-AGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK--VTAVPTLLKYGTPQKLVESECLQANLVEMLFSED 123          
The following BLAST results are available for this feature:
BLAST of TCONS_00048332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TXD171.941e-2847.66Thioredoxin domain-containing protein 17 OS=Homo s... [more]
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