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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004754 ID=TCONS_00004754|Name=TCONS_00004754|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATGATAACGTGATTTTTGTGTAGAAGATCTCGTCACTTCATCTTAATATC
TTTGATATTATGATCGTTCTACAGCAGTGTTTTACTGTTTTGGTCATTCT
AAACACAGTTTTATCACATCCAGCTTTCCGACTCGAATATTCATGGGAAA
ACGATGATGACAACTCTCACATCACCGAACAAGACCCGAATTTTTACGAA
AACGAAAATGAAGGAAAATCACATCAGTTGAATAAGCGAGACGATTTGAA
TGATGATGCTCGCAGGCTTTATAATGATAAATCTACTGTCGAAGATCCTG
CAATGTCAGCTATGCAAGGCAGTATTTTATTGGAACAACGTAACGAACTC
GCCGCGCTTAAGGATGACTCGGCGTTTGAAGACTCGGCTTTATCCTCTCT
TCAAGAGGATTCTCAGAAAATGGACTCGGATGAACGTAAAGTCGACGATG
ACCGACGCCGTAAATTCGGAAAACATAAGAAAAAGTTCACAGATAAACCT
GTAAAGTCTAAAGAAGATGAAGATAATGTAGATCTTAATACTAAGATTCG
TCAATTCTCGGAGTCGCTCGGTCCAACGACAAAGGAGGATTCTAACGACA
ATGATAACGACGATGAACGAGACAAACGAAGTCGTATTGAACGTGAGGAT
TTTGATTTGAGCGATGATATGTTGCAGGATTTTGCAACTTCTTCTGTTCC
CATCAAAAAGCGTCATAAAAAGTCGTATATTCATCCGTTAAAATCGTCAG
AAAGTCCGTCAGAGATCCTTGGAAATATtgcaaagatttttgaaaatgcc
aaTGATCAAAATGACGCTTTACTAGTtcgtaaaagaaaagaaatgtcACG
TGATATAATCCCAAACCCGCGAGATATTTACTCAAAACGTGATTGGCCAA
TAGAATCGTCACGTGATAGTATTCCTTCTCCTGATTCGTCGAGAGAGCAA
GATGAAAAAGATATCATCCCGAGGGCACCGAGGCTCAACGCCAAGTATGA
CGTCATAGAACACCACCCTCACAGTGATAAGCTTTCGTTGGACTGAGAGT
CTCAAGAGTTTTACCGTTGGTTCGAGTcttatttcaaaaagaaatgtccT
CNTCAAGAGTTTTACCGTTGGCTCGAGTCTTATTTCAAAAAGACTTCGGT
GAAACGTCCTGTTGGAGTATAATTACCACTAATTGAGTAAAATATGCAGT
AATTAGTTTGTTCTAATTTTCAATCTGTGGGTTTAAAGTGACAAAAGTGA
CAAAATAAGTGTACGTAAACGTTAGAGGCGATAGATAGATAACGAACGCT
TACAAACAATGCGTATTGAAATTCTATTGGAAATTCTATGTTTTCCGTCC
ATCTGCCAAACAGCGATAACGTGTTTTGATTACTCCTATACCCGCCCGGA
CCGTGTAAATGATACGATCCGGTGCCCTTATCCAGCGGATACGTGCTACA
CTAAAAGAACTATGAATGGCTTTCTTTTGAGACGATTTTGCACGTGGGAA
GGACATTGTACCGAAAAGAATATATGTGGCGTGAAATCTGAATGTAATCT
ACATTGCTGCCACAAGGACACGTGTAACCATTCCAACTCGTTATTGGTAA
CTCGGAATAACTCGATGTTTATGATTTTAATGAATTGGTTGATTGTTTTC
TgtattttaatcttttttattaCATATCTGTAAA Run BLAST on NCBI transcript from alignment at sc0000048:328171..332383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004754 ID=TCONS_00004754|Name=TCONS_00004754|organism=Clytia hemisphaerica|type=transcript|length=4213bp|location=Sequence derived from alignment at sc0000048:328171..332383+ (Clytia hemisphaerica)
ATGATAACGTGATTTTTGTGTAGAAGATCTCGTCACTTCATCTTAATATC
TTTGATATTATGATCGTTCTACAGCAGTGTTTTACTGTTTTGGTCATTCT
AAACACAGGTGAGGCCAATTTCAAGATACTAGTTTTGAAGGCAGGATTTC
GTCTCCAGTGGGAAAATTCCTTAGAATTTTATagccccacttggaaatta
attttttatttcaccctcgttcgaaattcaatgcttaaaaattgcgcttc
aaaaccattgccactaaattttttaaccttggaacaaaggaatttctatc
cccattggtaTTTCTggtatttttatccccactgaaaaaataagttccac
cggggctgtgagacaggggtgtaaaaaagCTCGCTGTcgtcctttttttt
ttaatggtaGTGGCGATAAAATCTAATCAAAGAATTGAGAAACTCTTGAC
CTTTAAAGCTCATTGTGAAATAgacgattttttataagaatgtactTTAT
AAGATTATTGGAACTTAAGAATGATGATATTCTTGAGAATTTTacctgta
aattgccaattGTCCCCTAATACTCAAAGGtttctcaaaaatgccaaaat
tttGCTTGAGGCTAGTATTTCATGTTAGCTAATCTAGGttcccaaaaaat
taagaatattcaagatgaaatagaaaaacatcattagtcttataaaaaaa
ggtgtatcaaCGTCCTTCTaaaatgtttacaaattttgcaaTCCTTCTTG
CTCATTTCAATTTCTGGTTGAGGAAATATTAAGCTACGACACATTTTAAG
ATCCTGAATTTTATTGATCAATCTAATTTCGATTTAATCGTAGTTTGTTT
AGGAAACGATTTCACTTTAAATGACTATTGCTAACTCATGTTCAAAACAA
CGCACCAGGTTTATAACGAGCGATAATTATTGTAGCAAACGAGTTTCCTT
GAATATCTCTTTAACAAGTCTCATTATGGTGTTTTTGATTATATTTAAAT
TATTTGCTCATAGTATAAGTTTACAATCGGTAGACAACTAATTTCTCCAC
CTTGACACCAGATGTGCCTATTTTCCATCAACCTATGCAATAACGAACCT
ATTTAATTCATGATGTGCATCATTGCAATGTTTTCCacagacccaatagc
tgattggttgaaagtgacgtattgactgattttacgttacttgcaaccaa
tcagctattcatgatgtccatgatgtaatgtcagaagacattgcaatggt
gcatatcatgaatatcataatTATTTGGAACCTTCGATCGAACTATAATA
ATGTTTCGATTTATTCTCCGAAAAGTTTTCTCTAGATTTTTATAGCGAAA
AGATTAGTCCAACATATtgttattgtttcaattttttttctcccttaGTT
TTATCACATCCAGCTTTCCGACTCGAATATTCATGGGAAAACGATGATGA
CAACTCTCACATCACCGAACAAGACCCGAATTTTTACGAAAACGAAAATG
AAGGAAAATCACATCAGTTGAATAAGCGAGACGATTTGAATGATGATGCT
CGCAGGCTTTATAATGATAAATCTACTGTCGAAGATCCTGCAATGTCAGC
TATGCAAGGCAGTATTTTATTGGAACAACGTAACGAACTCGCCGCGCTTA
AGGATGACTCGGCGTTTGAAGACTCGGCTTTATCCTCTCTTCAAGAGGAT
TCTCAGAAAATGGACTCGGATGAACGTAAAGTCGACGATGACCGACGCCG
TAAATTCGGAAAACATAAGAAAAAGTTCACAGATAAACCTGTAAAGTCTA
AAGAAGATGAAGATAATGTAGATCTTAATACTAAGATTCGTCAATTCTCG
GAGTCGCTCGGTCCAACGACAAAGGAGGATTCTAACGACAATGATAACGA
CGATGAACGAGACAAACGAAGTCGTATTGAACGTGAGGATTTTGATTTGA
GCGATGATATGTTGCAGGATTTTGCAACTTCTTCTGTTCCCATCAAAAAG
CGTCATAAAAAGTCGTATATTCATCCGTTAAAATCGTCAGAAAGTCCGTC
AGAGATCCTTGGAAATATtgcaaagatttttgaaaatgccaaTGATCAAA
ATGACGCTTTACTAGTtcgtaaaagaaaagaaatgtcACGTGATATAATC
CCAAACCCGCGAGATATTTACTCAAAACGTGATTGGCCAATAGAATCGTC
ACGTGATAGTATTCCTTCTCCTGATTCGTCGAGAGAGCAAGATGAAAAAG
ATATCATCCCGAGGGCACCGAGGCTCAACGCCAAGTATGACGTCATAGAA
CACCACCCTCACAGTGATAAGGTAcatattttcttccttttttaaaaatt
tacttGTTCTATCTTCAAAAAGTTTATCTGGTCATTTATTTCAACTGAAA
ATGAAGTACTGTGTAagaatttgatgattttaaataAATCAGAATGTTAA
CTTACATTGTTTTTAAGGCGGCAGTTTTTACGCTCTGTTATCGGTTTCTT
TTCGCACTCTGTTTCTTAAATATTCAATTCGTCATTGCAACGAGCTCGTC
AAAAGCTCGTTCATGACATTCGAATTGTAGATTTAAAACGATGTGATCTC
GTTTCAATCACGAACTTAGCCGAGCTCGGAATTTCTGTACAGTCTTTAGC
GACCGGTTAGAATCATTATCGGAATAAGAACCATAAGAATTTgcgtttat
ttacttttcatttttattgtctCGAATATTCTTGGTACTTTGTGAAAGTA
CAATTGGCGCtgaaatatattggcacttttgggtattttaaggcttttca
gaatttaaagaccgggcgagaattgcagtaAAAATCTACGTTccaaccgt
actttaaagcacttaaaaatcacaaattttcaaattttccccttttgtgc
caaatgtTACGGTGGGGATTGTATGTGATTTTGAGGCATTTGCCAGAAAT
ATACAGAAATTACTAGAAATTACTAGCagttttttgtatgaaaaattgGC
ATTTTCTTGAAAGTCCATTGAATTTGTAATTTGGTTTAAATCAATCTTTG
ATTTTAGAGATGTTGTCCCATTTTCACTCGCGGTCTTATTGTATCTACAG
AGTAGGTCAAATGAATCATTCATTTGAATATAGCGATTTCGTTTTCGGCT
TTTCTGATTGATCGTTTTGTTTGGAATTTTGTGTGAAGAGAATGtcttga
ttttattttcaaataatcatTTTCTACACCAATTTCTATCTCCTTTAAAA
CTGATTGTGAAAAACTCAACtagatgaatgaatgaatgataaATGTCACC
TTCTCAGTTCTTCTTTGAGCGCTTACAAAATTTTCTCATacatcaaaaaa
agatttttcaagatatttttttTGTGCAGAAAAAACTCGCCAGTTGTTGA
ATAATTTAAGTCTTCCATAgggtttttttcttaaatagaataaaaaatga
GTTTTGAGTGTTATTTTTGGGGCCCAAAACAGTATTTTGGTGCTTCATAA
TTATATTAACTAATTTGGTAGAACTGGTCGTTAAAAAGCATATACCATCT
CTCTATACAGCTTTCGTTGGACTGAGAGTCTCAAGAGTTTTACCGTTGGT
TCGAGTcttatttcaaaaagaaatgtccTCNTCAAGAGTTTTACCGTTGG
CTCGAGTCTTATTTCAAAAAGACTTCGGTGAAACGTCCTGTTGGAGTATA
ATTACCACTAATTGAGTAAAATATGCAGTAATTAGTTTGTTCTAATTTTC
AATCTGTGGGTTTAAAGTGACAAAAGTGACAAAATAAGTGTACGTAAACG
TTAGAGGCGATAGATAGATAACGAACGCTTACAAACAATGCGTATTGAAA
TTCTATTGGAAATTCTATGTTTTCCGTCCATCTGCCAAACAGCGATAACG
TGTTTTGATTACTCCTATACCCGCCCGGACCGTGTAAATGATACGATCCG
GTGCCCTTATCCAGCGGATACGTGCTACACTAAAAGAACTATGAATGGCT
TTCTTTTGAGACGATTTTGCACGTGGGAAGGACATTGTACCGAAAAGAAT
ATATGTGGCGTGAAATCTGAATGTAATCTACATTGCTGCCACAAGGACAC
GTGTAACCATTCCAACTCGTTATTGGTAACTCGGAATAACTCGATGTTTA
TGATTTTAATGAATTGGTTGATTGTTTTCTgtattttaatcttttttatt
aCATATCTGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004754-exon-sc0000048-1491911889:328171..328278 | TCONS_00004754-exon-sc0000048-1491911889:328171..328278 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1510915933:328171..328278 | TCONS_00004754-exon-sc0000048-1510915933:328171..328278 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1575043694:328171..328278 | TCONS_00004754-exon-sc0000048-1575043694:328171..328278 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1491911889:329569..330491 | TCONS_00004754-exon-sc0000048-1491911889:329569..330491 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1510915933:329569..330491 | TCONS_00004754-exon-sc0000048-1510915933:329569..330491 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1575043694:329569..330491 | TCONS_00004754-exon-sc0000048-1575043694:329569..330491 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1491911889:331731..332383 | TCONS_00004754-exon-sc0000048-1491911889:331731..332383 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1510915933:331731..332383 | TCONS_00004754-exon-sc0000048-1510915933:331731..332383 | Clytia hemisphaerica | exon |
| TCONS_00004754-exon-sc0000048-1575043694:331731..332383 | TCONS_00004754-exon-sc0000048-1575043694:331731..332383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000048 | supercontig | sc0000048:328171..332383 + |
Blast
The following BLAST results are available for this feature:
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