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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048526 ID=TCONS_00048526|Name=TCONS_00048526|organism=Clytia hemisphaerica|type=transcript|length=1365bpRun BLAST on NCBI protein sequence of TCONS_00048526-protein >TCONS_00048526-protein ID=TCONS_00048526-protein|Name=TCONS_00048526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp EFLPDFPDKFNVPRSFRAGKKIIWSIFVKAARFGFCIKMSAMEVDEAPKKRun BLAST on NCBI transcript from alignment at scaffold_143:58090..75233- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048526 ID=TCONS_00048526|Name=TCONS_00048526|organism=Clytia hemisphaerica|type=transcript|length=17144bp|location=Sequence derived from alignment at scaffold_143:58090..75233- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:58090..75233- >TCONS_00048526 ID=TCONS_00048526|Name=TCONS_00048526|organism=Clytia hemisphaerica|type=CDS|length=12276bp|location=Sequence derived from alignment at scaffold_143:58090..75233- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048526 vs. Swiss-Prot (Human)
Match: RFC2 (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3) HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0 Identity = 253/316 (80.06%), Postives = 286/316 (90.51%), Query Frame = 2
Query: 158 YELPWVEKYRPTKLNEVTGNEETIKRLQVFAEQGNLPNIIIAGSPGIGKTTSILCLARQLLGQSYKDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEADSMTSGAQQALRRTMELFSKTTRFALACNQSDKIIEAIQSRCAVLRYTKLTDAQILERLLDICDKEKVPKTDDGLEAIVFTAQGDMRQGINNLQSTCAGFGFVNSDNVFKVCDEPHPLLIKNMLTLCVESNFEEAYKIMSHLWKMGYSAVDIISNIFRVCKNLDMAEYLKLEFIKEIGYTHMRIAEGVQSLLQMSGLLAKLCQKSL 1105
YELPWVEKYRP KLNE+ GNE+T+ RL+VFA +GN+PNIIIAG PG GKTTSILCLAR LLG + KDA+LELNASNDRGIDVVRNKIKMFAQ+KVTLPKGRHKIIILDEADSMT GAQQALRRTME++SKTTRFALACN SDKIIE IQSRCAVLRYTKLTDAQIL RL+++ +KE+VP TDDGLEAI+FTAQGDMRQ +NNLQST +GFGF+NS+NVFKVCDEPHPLL+K M+ CV +N +EAYKI++HLW +GYS DII NIFRVCK MAEYLKLEFIKEIGYTHM+IAEGV SLLQM+GLLA+LCQK++
Sbjct: 34 YELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTM 349 The following BLAST results are available for this feature:
BLAST of TCONS_00048526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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