TCONS_00048528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048528
Unique NameTCONS_00048528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048528 ID=TCONS_00048528|Name=TCONS_00048528|organism=Clytia hemisphaerica|type=transcript|length=3390bp
tATTACTTCTTACCCTTTCAGGAAATGATATAAAATCATCGAAAGTATAA
CAAAAACATGACTTCAAATTGGAGGCTAAAGAATGATTCTGTATATATGA
CTATGCTGGGCATCATTCATTTATCTAAATTTGATTGATTTCTTGTGATG
ATGGGAAGTAGGCAGTACATTTGTAGGTGTTATTTCCAGAGGAATATTTT
TCTACATGACTACAAATTACATGTCACTTACAGAGATGAGCAACAATTCA
AGGATGATTACAAGAGTACTCTCGATCAAAGAGGATGCACAGACCTATCT
GCAGTGATTGAACAAGTTCATAAAGAGATTAAAAGACGTGAAGAAAATGG
ACGAATATCATCTGAACGCAAACAAGAGATAGAACGATGCTACAAACCTT
TACATTCGAGCGTCTACTCTCTGAAGGTTAGCTCTAAAACTACATAAAgA
ATTCTACTTATCACCAACATTCTTATCCATTGTTGAATATTGTAAACAAG
ACAATGCAGTGAAGACAGAAGTACTCAAGCAACTGAAATCTTGGAAAGCC
GATCAAGTTTATTCATTGGAAGTGTTCACTAAAGAATTTTGTCAACTCTT
TCTCGAAGAATTGAAACATTTTGAGGAAAGTGACATGCCTAAAGGACGTC
CCAACACCATGAATGTGACAGGCTTACTCCTTGAAGAGTTGGGATTTTAT
TCAAACTTGGTGAATCCATTGCGTGAGAAATATTTGAATCCAATAGCTCG
TATATTGTATCCAGATTGGGTTGGAGAAGGTAGGCTAGATTCTCAAAGAG
CTTTCATTGTTTCTTATAACAATTGTGATGGTGATTCTGAGGACACTGCC
ACAGATCTGGCGCTTCATTTCGATAATGCAGAGGTCACATTGAACGTATC
GTTGTCCAGTGGATTTGAAGGAGGAGAGTTGTTCTTCGGCAAATTGTGGA
AGGAATCGACAAGTACCGATTACAGGCGAGTGGACCATTCTCTTTCACAC
GGTGTGTTCCACAGAGGTCGGCAAATGCATGGTGCAATGCCCTTGGAGAC
TGGAGAGAGATACAATTTAATCATTTGGATGCGGTCGTCAAGTGTCCGAA
ATAAGTACTGTCCGATGTGTGAGCGGACACCTGACCTTGTTCCCACTCTA
GGTGAAGGAGATGGCTTTGTAGCTCCGGAGGTTCATGTTTGTCAATTAAG
TTGATAGCTATGGTCAGATTTTTTTCCTATATACTTAGTTCTGGACTGAG
TTTCCTCCAGGTCAAAAAATGGATTAAAAGAAGTTCTTGAATCGGGTAGA
TTATTTTGTGTTTACACGACTAAAAGAATCACTAATAGTGTTCTGCCAAA
ATCgtttctaaaatttaaaaatgttatgtTAGCATGGCGTTCTTGATCTg
catttagaacgccatgaatGTTAGCAAATTTAAATATTGCTTTTGCTATT
ACTACAGTgtgcaagaaaaaacaaaattgaattaTAGTACATTGCTATTA
CTATATTGCCACTCGGCACTGTCACCACCGTTTACTAACTTTATTGATGT
TAGCCAATTTAGTGATacagtaatttttattttttatgtgctttttggga
tatttttatttcatatgGATGGAGTATTTTTAATGGTGATATTTGCTTCA
AATTTTATATaagttaaaaatgaattatgtaGATAACAAATGCAGCTAGT
GGCACTTAAGTTGTAatagtagaaataaaaaattgttttgcttgttGTGC
ACTTTGTGATCTAACTTGATACTTCATTTTTCCAGCTACAGCTAAAATGA
CTCCTGTTCCATTTCTGTTTATCAACTGGTCTAGTTTTAATAATTGCTTC
CTCAAGTCTTCAATACTTGTGCGGATAGAAACTAGTAAGCACTTAATCTA
CCGTATGATCTAGCCATAACAAGCTCGGTAGGACTTAATACGGCCGTAGT
TACTTTCTTCGATTGTTCAGCCTAGAGCTACATTCCGTCTCAAATGAATT
CTCATTTctattcttcttcattttcagtgAGGTAAAActagagaaaataa
aaaaagttaaaaaatgacagCAGCTTCACAAATTCAACAACTGATTTTGG
AGAACCTTGATCCAATTCATTTCGAGATCGAAGACAAATCTGGAGGATGT
GGACAAATGTTTGCATTGATCATCGTCTCTAAAGCTTTTGAGGGTACTCC
TTTATTAAAACGGCAACGAAAAGTAAATGAGATTTTGAAAGACCTTTTAC
CGAATATTCACGCATTGGAGATGAAAACATGGACGGAAGAACAATGggag
aaacaaaaaaataaaaccagTTGAATTATTTGGGCTTGCATAAAGAGAGG
GACTATTTGACGCCATTTTCTTTCTTGGTTGTCGAGCTCTGTTCCTCACA
CTGCTTCGTATGAACAGTAACAATAAAGACAGTCATCGGGACTATCGAAA
ATGACAAACTATGATCATCTTGGTTTCTAAACCTGTATTAGAACTTATAT
TTAttacaaaaattaggaaaatggGAAAATTGTGATATATTTTCACCCAT
TATTAAATGTAGCTATAGATATATGATTTTACAGCACATCCTCTACAATT
CGAacctttttaactttcttttaaatGTCTCCCAAAAACTCGAGCAATTT
GTTGTAATTTATAGTAATTAGTTACAGGaataaaggcttggggacacaag
aagtttttttcgcgttggtgcaatgcaacatgctccatctcaCCAACCTA
AAAAGTCTTCTCGACTCTCCACCCTATTTTTCTTTCGACCAATAAaggtg
aaatctcacttttgcccctgggacaatggaacaaaattttaatcagcgtg
tcttttgggtatttcccgcactttttttcttgtgttggtgggatggagca
tgttgcattacaccaacgcgaaaaaaattcTCGTGCCCCCAATCCTTAAT
GTTAAACTTTAGAACGCCGGAATTTACCGAGTTAACCAAAAAAAGACCTG
CATACGATTTAAAGTTTGATAAAACTTAATTTAAACCTTCCTctatagaa
ttaaaaaaaaaaacgagaataaaatcaatagaaaatcttttgataaacct
gtatactttttttggtgcaccatTTTGGCTTTTCAAACTTGCTTGTGGTT
TTCGCGCTATCGCTGTTGGAAAGAACATATTTGAAAAACAAGTGGTTTCC
AACTATGAGAACCGATTATTTTAAACTTAAATAGATGTTCAAAGCTGGAT
GTCCAAGGATTATAGCATATTTCAAGCCGtgtactttttatatttttttt
taccaaCATATACAAACACTTAATTTTCTTGCCATTGTGGTTTTATTCAT
CAATAAAGAAATTAACCGGAATACAGAACAAACATAAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_143:76462..82778-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048528 ID=TCONS_00048528|Name=TCONS_00048528|organism=Clytia hemisphaerica|type=transcript|length=6317bp|location=Sequence derived from alignment at scaffold_143:76462..82778- (Clytia hemisphaerica)
TATTACTTCTTACCCTTTCAGGAAATGATATAAAATCATCGAAAGTATAA
CAAAAACATGACTTCAAATTGGAGGCTAAAGAATGATTCTGTATATATGA
CTATGCTGGGCATCATTCATTTATCTAAATTTGATTGATTTCTTGTGATG
ATGGGAAGTAGGCAGTACATTTGTAGGTGTTATTTCCAGAGGAATATTTT
TCTACATGACTACAAATTACATGTCACTTACAGAGATGAGCAACAATTCA
AGGATGATTACAAGAGTGTGAGCTAGCTTGTCCATTAGTTTTTATATTGA
GTTGTTTGATTTGAAACTCTGCCATTTTAATGTTAACAATGCTATACAAA
TAATACTGCTAAATCCAATATGTTTTCTAAAATTAATAGCAACAACACAC
CCAGGTATCAGTAGATCTCGTAAGAATTATATTCAGAAGTTTTTCCAATG
AGACTACATATACGTCTCACTCATATTTTTCAAACAGATTTTAATATATT
GTAATATTATTTGTCACACTATATATTTCGTAATTTCTTTGATCGTCTTT
TCATCGGTAGACTCTCGATCAAAGAGGATGCACAGACCTATCTGCAGTGA
TTGAACAAGTTCATAAAGAGATTAAAAGACGTGAAGAAAATGGACGAATA
TCATCTGAACGCAAACAAGAGATAGAACGATGCTACAAACCTTTACATTC
GAGCGTCTACTCTCTGAAGGTTAGCTCTAAAACTACATAAAGTACGTACA
ACCTTTTCAATGTCATTTGTGAAGAAGCAAGTTTATGTATGTGTGTTGTT
CTGCGATGGAAACAATTAGCTTTCTCTAGATCTAGATCGACTGAGGACGA
CGGTAAACGAGCACTTTTTCGGTCCTCGATTTTGCAGGTCAGAGCTGCAG
GTTTTTCCAAATCGCTGTCCTTAAAAGTGCAAGTACATAAACTCGTTGGT
TTCTTGTGATCTCAGAGAAGACACCATAGTCTCCAGTCTCCCTGTGTTTA
TTCATTTTAATTTCAGGAATTCTACTTATCACCAACATTCTTATCCATTG
TTGAATATTGTAAACAAGACAATGCAGTGAAGACAGAAGTACTCAAGCAA
CTGAAATCTTGGAAAGGTTTACTTCTCTGCTAAGAATTTTCACATCACTT
CTTGTCTCCTCTTCTTAGGGTTCTGACCATAGTCAGAAAATATGATAAGG
GATTTGAAGATTCATTTCGGGATCCTTGACACTTTTAGCAAGAAACTGTC
TTTATAAGTTGTTTGGTAATTTATTCTGTCAAGAATAATTAAGTTGTCTG
CAAAGAATTGATCTATTGAAATTTTTCGGAAATATTTTCTAGTCGACTGT
TTTTCTACCAAAAGTTGTGATGAAAATTTTCGTCAAAAACCACATTTTTC
AAGATTTTGAGACAAAGTAACTTTTACCAAAATTTAGGAAAATCCATTTT
TAGTTTGGTTTTAAACTTAAAAATACCTGAAAATACACCATCTAACGCAA
ATTTGTTCAAAATGTTTTTTCTTCACCGAAAATAAGGTATTCAAAGTTTA
AATTCTCTTCTTTGCAAAAGTCTTCATTTTCTTCTTCATCAAACTTTTTC
ATTGCAATTTTTAAATTTTCAGATTCAGGAATAGTTGGCCTGACAGAAAA
CAGAAAATGTATAACATGCCATGGTTTGGTTGGCAGAAATTTGTGTTTTG
TACATAGCAATTATGAAAAATTCACTATGGTCAGCCCTTAAATTATGATA
CCAAATTTCCAGCACACAGCTCTCTTGTGTGATGTGTCCTGAAAAGATAT
GCTTTAGCGATTTAACTTTGAATGTGCTGCTTTTCTTCGTAATAGGTAGT
AGTTTCGTATTAGTTTGAAGTAAAGGATCAAAATATTTTTCACCGCTTAG
CCGATCAAGTTTATTCATTGGAAGTGTTCACTAAAGAATTTTGTCAACTC
TTTCTCGAAGAATTGAAACATTTTGAGGAAAGTGACATGCCTAAAGGACG
TCCCAACACCATGAATGTGACAGGCGTAAGTATTTTCATAGATATAATTC
AAAACCGTACCTATTTATTAAAGTGTTTGTTAGAGTTCTATAATAAATTA
ACCCTGACACCAGATACTGTTAATCTATGTCCAAAAATCTTTCGACCCTC
ATTCATCAACTTGCAACAGATCAAAGCCCCTAGATGTTCAGTCAAAATGC
CTTCTTTATTTCTGCTAAAAAAGGGAAAATGTTATCTTCATAAAGTAATG
CTTTAAAAAAATTCATGAAGCAATTGGAATGGCAAGTTTAATTTCTCAAA
AACTCCTCTATATGTTTGTGCTATATTGTCAACCTTACACAGTTACTCCT
TGAAGAGTTGGGATTTTATTCAAACTTGGTGAATCCATTGCGTGAGAAAT
ATTTGAATCCAATAGCTCGTATATTGTATCCAGATTGGGTTGGAGAAGGT
AGGCTAGATTCTCAAAGAGCTTTCATTGTTTCTTATAACAATTGTGATGG
TGATTCTGAGGACACTGCCACAGATCTGGCGCTTCATTTCGATAATGCAG
AGGTCACATTGAACGTATCGTTGTCCAGTGGATTTGAAGGAGGAGAGTTG
TTCTTCGGCAAATTGTGGAAGGTATTGCTTTTCATTTTTTCAACACCGTT
TGGTGTTTCGGGATTAATTGAAAATTCTTTTTGTTGAGACAAGTTTTTGG
TGTATTAAGGAAGATCTAAATTTTGCCATCTCGTTTACACACATAATGTA
AAAATATGAACTGGTGGAACCGTAATTACCACTTATCAAATATGACAAAA
CTGCCCTATTCATGATATGCACCATTGCAATGTCTTCCGTTCCACCCAAT
AGCTGATTGGTTGAAAGTGACGTATTGATTGATTTTACGTCACTCCCAAC
CAATGAGCTATTGGTTCTGTGACGTAATGTCAGAAGACATTACAATGATG
CATATTATGAATTAGCTGATTGGTTGAAAGGGACGTATTGACTGATTTTA
CGTCACTTCCAACCAATGAGCTATTGGTTCCGTGACGTAATGTCAGAAGA
CATTGCAGTGGTGCATATCATGAATTTAGGATATGCTTCACTGCAATATC
TTCTGACATTACGTCATTTTTACAATTCATGATATACACCATTGCATTGC
AATGTTTTCCACAAACCCAACAGGTTGGTTGAAAGTGACGTATTAACTAA
TTTTACGTCACTTACAACCAATCAGCTATTTGGTCCGTGATGTAATGTCA
GAAGACATTACAATGATGCATATTATGAATTAGCTGATTGGTTGAAAGTG
ACGTATTGGGTGGAAAAAAAACAGAAGAGTTTCATAATCCATGATATGCA
CCATTGCAATGTCTTCCACGGAGCCAACAGCTGATTGGTTGAAAGTGACG
TATTGACTGATTTTACGTCACTTAGAACCAATCAACTATTGGGTCCGTGA
TGTAATGTTAGAAGACATTACAATGGTGCATACCATGAATTGCGTGAAGT
CATTGCAATGATGCATATTATGAATTCATTTTATCAGGAATCGACAAGTA
CCGATTACAGGCGAGTGGACCATTCTCTTTCACACGGTGTGTTCCACAGA
GGTCGGCAAATGCATGGTGCAATGCCCTTGGAGACTGGAGAGAGATACAA
TTTAATCATTTGGATGCGGTCGTCAAGTGTCCGAAATAAGTACTGTCCGA
TGTGTGAGCGGACACCTGACCTTGTTCCCACTCTAGGTGAAGGAGATGGC
TTTGTAGCTCCGGAGGTTCATGTTTGTCAATTAAGTTGATAGCTATGGTC
AGATTTTTTTCCTATATACTTAGTTCTGGACTGAGTTTCCTCCAGGTCAA
AAAATGGATTAAAAGAAGTTCTTGAATCGGGTAGATTATTTTGTGTTTAC
ACGACTAAAAGAATCACTAATAGTGTTCTGCCAAAATCGTTTCTAAAATT
TAAAAATGTTATGTTAGCATGGCGTTCTTGATCTGCATTTAGAACGCCAT
GAATGTTAGCAAATTTAAATATTGCTTTTGCTATTACTACAGTGTGCAAG
AAAAAACAAAATTGAATTATAGTACATTGCTATTACTATATTGCCACTCG
GCACTGTCACCACCGTTTACTAACTTTATTGATGTTAGCCAATTTAGTGA
TACAGTAATTTTTATTTTTTATGTGCTTTTTGGGATATTTTTATTTCATA
TGGATGGAGTATTTTTAATGGTGATATTTGCTTCAAATTTTATATAAGTT
AAAAATGAATTATGTAGATAACAAATGCAGCTAGTGGCACTTAAGTTGTA
ATAGTAGAAATAAAAAATTGTTTTGCTTGTTGTGCACTTTGTGATCTAAC
TTGATACTTCATTTTTCCAGCTACAGCTAAAATGACTCCTGTTCCATTTC
TGTTTATCAACTGGTCTAGTTTTAATAATTGCTTCCTCAAGTCTTCAATA
CTTGTGCGGATAGAAACTAGTAAGCACTTAATCTACCGTATGATCTAGCC
ATAACAAGCTCGGTAGGACTTAATACGGCCGTAGTTACTTTCTTCGATTG
TTCAGCCTAGAGCTACATTCCGTCTCAAATGAATTCTCATTTCTATTCTT
CTTCATTTTCAGTGAGGTAAAACTAGAGAAAATAAAAAAAGTTAAAAAAT
GACAGCAGCTTCACAAATTCAACAACTGATTTTGGAGAACCTTGATCCAA
TTCATTTCGTAAGTAAACATAATACAACAATTTTCTCGTCTTTATTATTA
CCATCTCTCTGGTATTTTGAAAACTTCAATATTTTCAGTGTTGTAAGCAA
TGGTACACTAGCTATTGAAAATAATGATACATTCGCTGTTTTCTTGAAAA
TTAATCACTACCAGGGTAGAAACTTCGAAATGAACTCTCCGAAATGTTCT
GAAAAGCAGATTCTCAAAAAAAAATTTCCTTGAAAGTCTCTTCCTTCCAA
AGTAGTTGGCAAAAAGTATTAAATGTGTCTGACCTCTCTGTCTGGGATCT
TTTTTTCAGGAGATCGAAGACAAATCTGGAGGATGTGGACAAATGTTTGC
ATTGATCATCGTCTCTAAAGCTTTTGAGGGTACTCCTTTATTAAAACGGC
AACGAAAAGTAAATGAGATTTTGAAAGACCTTTTACCGAATATTCACGCA
TTGGAGATGAAAACATGGACGGAAGAACAATGGGAGAAACAAAAAAATAA
AACCAGTTGAATTATTTGGGCTTGCATAAAGAGAGGGACTGTAGTCACGA
TTAAACCTTTAATAATACCAATTAACAGAAGATTTGACGCCATTTTCTTT
CTTGGTTGTCGAGCTCTGTTCCTCACACTGCTTCGTATGAACAGTAACAA
TAAAGACAGTCATCGGGACTATCGAAAATGACAAACTATGATCATCTTGG
TTTCTAAACCTGTATTAGAACTTATATTTATTACAAAAATTAGGAAAATG
GGAAAATTGTGATATATTTTCACCCATTATTAAATGTAGCTATAGATATA
TGATTTTACAGCACATCCTCTACAATTCGAACCTTTTTAACTTTCTTTTA
AATGTCTCCCAAAAACTCGAGCAATTTGTTGTAATTTATAGTAATTAGTT
ACAGGAATAAAGGCTTGGGGACACAAGAAGTTTTTTTCGCGTTGGTGCAA
TGCAACATGCTCCATCTCACCAACCTAAAAAGTCTTCTCGACTCTCCACC
CTATTTTTCTTTCGACCAATAAAGGTGAAATCTCACTTTTGCCCCTGGGA
CAATGGAACAAAATTTTAATCAGCGTGTCTTTTGGGTATTTCCCGCACTT
TTTTTCTTGTGTTGGTGGGATGGAGCATGTTGCATTACACCAACGCGAAA
AAAATTCTCGTGCCCCCAATCCTTAATGTTAAACTTTAGAACGCCGGAAT
TTACCGAGTTAACCAAAAAAAGACCTGCATACGATTTAAAGTTTGATAAA
ACTTAATTTAAACCTTCCTCTATAGAATTAAAAAAAAAAACGAGAATAAA
ATCAATAGAAAATCTTTTGATAAACCTGTATACTTTTTTTGGTGCACCAT
TTTGGCTTTTCAAACTTGCTTGTGGTTTTCGCGCTATCGCTGTTGGAAAG
AACATATTTGAAAAACAAGTGGTTTCCAACTATGAGAACCGATTATTTTA
AACTTAAATAGATGTTCAAAGCTGGATGTCCAAGGATTATAGCATATTTC
AAGCCGTGTACTTTTTATATTTTTTTTTACCAACATATACAAACACTTAA
TTTTCTTGCCATTGTGGTTTTATTCATCAATAAAGAAATTAACCGGAATA
CAGAACAAACATAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030860XLOC_030860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048528-exon-scaffold_143-1575043694:82512..82778TCONS_00048528-exon-scaffold_143-1575043694:82512..82778Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:82038..82218TCONS_00048528-exon-scaffold_143-1575043694:82038..82218Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:81663..81762TCONS_00048528-exon-scaffold_143-1575043694:81663..81762Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:80754..80878TCONS_00048528-exon-scaffold_143-1575043694:80754..80878Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:80158..80436TCONS_00048528-exon-scaffold_143-1575043694:80158..80436Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:78071..79241TCONS_00048528-exon-scaffold_143-1575043694:78071..79241Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:77539..77769TCONS_00048528-exon-scaffold_143-1575043694:77539..77769Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1575043694:76462..77497TCONS_00048528-exon-scaffold_143-1575043694:76462..77497Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:82512..82778TCONS_00048528-exon-scaffold_143-1510915933:82512..82778Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:82038..82218TCONS_00048528-exon-scaffold_143-1510915933:82038..82218Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:81663..81762TCONS_00048528-exon-scaffold_143-1510915933:81663..81762Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:80754..80878TCONS_00048528-exon-scaffold_143-1510915933:80754..80878Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:80158..80436TCONS_00048528-exon-scaffold_143-1510915933:80158..80436Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:78071..79241TCONS_00048528-exon-scaffold_143-1510915933:78071..79241Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:77539..77769TCONS_00048528-exon-scaffold_143-1510915933:77539..77769Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1510915933:76462..77497TCONS_00048528-exon-scaffold_143-1510915933:76462..77497Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:82512..82778TCONS_00048528-exon-scaffold_143-1491911889:82512..82778Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:82038..82218TCONS_00048528-exon-scaffold_143-1491911889:82038..82218Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:81663..81762TCONS_00048528-exon-scaffold_143-1491911889:81663..81762Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:80754..80878TCONS_00048528-exon-scaffold_143-1491911889:80754..80878Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:80158..80436TCONS_00048528-exon-scaffold_143-1491911889:80158..80436Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:78071..79241TCONS_00048528-exon-scaffold_143-1491911889:78071..79241Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:77539..77769TCONS_00048528-exon-scaffold_143-1491911889:77539..77769Clytia hemisphaericaexon
TCONS_00048528-exon-scaffold_143-1491911889:76462..77497TCONS_00048528-exon-scaffold_143-1491911889:76462..77497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:76462..82778 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6082	1.43682e-09	7.97485e-08	2.29689e-09	0.0326627	0.615497	1.60636e-05	1.91648e-06	0.879225	1.31525	0.874685	1.2115e-05	0.738991	1.32621	0.907527	0.378381	1.54429	0.450898	6.05199e-06	0.999612	1.09506e-07	1.2259	3.46936	1.41939	1.67436	0.000209098	4.54734e-06	0.000131857	1.73295	0.985819
Blast
[Close]
BLAST of TCONS_00048528 vs. Swiss-Prot (Human)
Match: OGFD2 (2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 OS=Homo sapiens GN=OGFOD2 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.922e-72
Identity = 127/253 (50.20%), Postives = 169/253 (66.80%), Query Frame = 2 
Query:  458 LSPTFLSIVEYCKQDNAVKTEVLKQLKSWKADQ-VYSLEVFTKEFCQLFLEELKHFEESDMPKGRPNTMNVTGLLLEELGFYSNLVNPLREKYLNPIARILYPDWVGEGRLDSQRAFIVSYNNCDGDSEDTATDLALHFDNAEVTLNVXXXXXXXXXXXXXXKLWKESTS-TDYRRVDHSLSHGVFHRGRQMHGAMPLETGERYNLIIWMRSSSVRNKYCPMCERTPDLVPTLGEGDGFVAPE---VHVCQLS 1201
            L+P FL++ EY    +A    +L++L++   ++ +Y + VFT  FCQ  LEEL+HFE+SDMPKGRPNTMN  G+LL ELG    L+ PLRE++L P+  +LYPD  G GRLDS RAF+V Y      +     +L  H+DNAE+TLNV+L   F GG L+FG L++  T+ T+   V+H +  GV HRG Q+HGA PL TGER+NL++W+R+S+VRN  CPMC R PDLV   G GDGF   E   V VC L+
Sbjct:  105 LAPEFLAVTEYSVSPDADLKGLLQRLETVSEEKRIYRVPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLMTPLRERFLQPLMALLYPD-CGGGRLDSHRAFVVKY------APGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPTALTEPLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRASAVRNSLCPMCCREPDLVDDEGFGDGFTREEPATVDVCALT 350

HSP 2 Score: 64.3142 bits (155), Expect = 7.922e-72
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:  142 LVMMGSRQYICRC--YFQRNIFLHDYKLHVTYRDEQQFKDDYKSTLDQRGCT---DLSAVIEQVHKEIKRREENGRISSERKQEIERCYKPLHSSVY 417
            +  +G+ ++ CRC  +   N+++  Y LHV +R EQQ + DY   L  RGC    D   ++ ++ +E++RR+  G+ S+ RK  I   Y P    VY
Sbjct:    1 MATVGAPRHFCRCACFCTDNLYVARYGLHVRFRGEQQLRRDYGPILRSRGCVSAKDFQQLLAELEQEVERRQRLGQESAARKALIASSYHPARPEVY 97
The following BLAST results are available for this feature:
BLAST of TCONS_00048528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OGFD27.922e-7250.202-oxoglutarate and iron-dependent oxygenase domain... [more]
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