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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048574 ID=TCONS_00048574|Name=TCONS_00048574|organism=Clytia hemisphaerica|type=transcript|length=1510bp
CTCCAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAA
CTCCGTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGCAG
AAAATAACACCTGTCTTTGCCACAGTGCAAAGTTCCttgtaaaagtttga
aaattgctgatggtcaaaatatcaagaatgacatgtaaagaaaataaaat
atgttCAGAAAAAATGACAATAAATCTGGAATAGTTTCATTCATCAAATA
CGATGTATAAAGCTAGCGAATAAAAACtcgcaaaaacatcaaaaatacaA
CAACAGTTAGAATTGTTAATAAGGTAAGTACaagaaattgtttaaaaaaa
ggcaGGAAAGTTGTGCCATTAGGTGTGAGTAAAGGCCAAAAATAAGCAGA
TGACCATAAAGCGACAAAAGAATTCCCCCTTGACAATTCTCCCAGTATTC
TCAAGTTGATAAAAGGACTTATTAATAACGAAAGCNTGTCCCATGCGTCT
GCAGTTAAAGCATTGAATTTCGTCTAAACTTTGAGTGAAAGAGGATTCCT
TGTGTGCTTTTTTCTCTGTTTCGATTCTCGATCTGAATTGCTCGAACGAT
TTTCTTGCTTCTTTCAGATGTTTCTCACTGAGGTCCCCAGTCGAGAGAAG
AAGGTTTTGTTTGTAGTGTTTTACGACACCCCATCCTTCCTTGTCTGCTA
ATTTGATAATGGAAATTCTGTCTTCTAAAAGTTTCTTACCTTGTTTCATA
AATCCGGTTGCTGAGTTGTTGTCACCCTTTTCAAGTGCATCCAGAGCGTC
GTCGACAGTTTCCAAAACATTGATTGTATGTTTGAATTGTTCATCGGGgc
cctttttttcaaattcagtttgGTCGTATGATCTTTTTCTTTCTAATCTT
TGTTGTAACTTTGTCACCACGTTTCCTTCCTTGTTTAATTCATCCTCGAc
aattttcttgatttgatCTTGAAGCTCTTGATTtgccattttgttttggt
taaCTTAACTAATCTCAGTTAGCGCTCTTCTGCAAATGCGAGGATTATCA
GAATCGAAAGGTAccattttaaatatattttcaacgcATGCGCGCAGCGT
CCCAATCTGCGTGCGTAAGATATATAAAGCAGCATAAGGCGCTAGCCTGC
GAAACCGTTGAGAAACTCGTTTCTCGTCTTTCTTCGATCGCCGAGAAACA
CGCTTGATTTCAGTAACATTGTGGACATCACATGAGTTGATTTCAGTAAC
ATTGTGGACATCACAGGAGTTGATTTCAGTAACATTGTGGACATCACAGG
AGTTGATTTCAGTAACATTGTGGACATCACAGCCGGTAACGCAAGTTTTT
TCTTCATCGAAATTGCTCTCGGCATCATGATCCTTTTCGGTAACAAAACC
AGCATTGTCAGGGTCGGTAATGTGAGCATCAGCATCCAAATCGGAAAAAT
TGGAAACGCTCTTCAAAATAAGATCGGCATCCCTAGAATCAGTATCGGTC
TTGTCATCAG Run BLAST on NCBI protein sequence of TCONS_00048574-protein >TCONS_00048574-protein ID=TCONS_00048574-protein|Name=TCONS_00048574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MANQELQDQIKKIVEDELNKEGNVVTKLQQRLERKRSYDQTEFEKKGPDE
QFKHTINVLETVDDALDALEKGDNNSATGFMKQGKKLLEDRISIIKLADK
EGWGVVKHYKQNLLLSTGDLSEKHLKEARKSFEQFRSRIETEKKAHKESS
FTQSLDEIQCFNCRRMGXAFVINKSFYQLENTGRIVKGEFFCRFMVICLF
LAFTHT Run BLAST on NCBI transcript from alignment at scaffold_143:183157..184666 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048574 ID=TCONS_00048574|Name=TCONS_00048574|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at scaffold_143:183157..184666 (Clytia hemisphaerica)
CTGATGACAAGACCGATACTGATTCTAGGGATGCCGATCTTATTTTGAAG
AGCGTTTCCAATTTTTCCGATTTGGATGCTGATGCTCACATTACCGACCC
TGACAATGCTGGTTTTGTTACCGAAAAGGATCATGATGCCGAGAGCAATT
TCGATGAAGAAAAAACTTGCGTTACCGGCTGTGATGTCCACAATGTTACT
GAAATCAACTCCTGTGATGTCCACAATGTTACTGAAATCAACTCCTGTGA
TGTCCACAATGTTACTGAAATCAACTCATGTGATGTCCACAATGTTACTG
AAATCAAGCGTGTTTCTCGGCGATCGAAGAAAGACGAGAAACGAGTTTCT
CAACGGTTTCGCAGGCTAGCGCCTTATGCTGCTTTATATATCTTACGCAC
GCAGATTGGGACGCTGCGCGCATgcgttgaaaatatatttaaaatggTAC
CTTTCGATTCTGATAATCCTCGCATTTGCAGAAGAGCGCTAACTGAGATT
AGTTAAGttaaccaaaacaaaatggcaAATCAAGAGCTTCAAGatcaaat
caagaaaattgTCGAGGATGAATTAAACAAGGAAGGAAACGTGGTGACAA
AGTTACAACAAAGATTAGAAAGAAAAAGATCATACGACcaaactgaattt
gaaaaaaagggcCCCGATGAACAATTCAAACATACAATCAATGTTTTGGA
AACTGTCGACGACGCTCTGGATGCACTTGAAAAGGGTGACAACAACTCAG
CAACCGGATTTATGAAACAAGGTAAGAAACTTTTAGAAGACAGAATTTCC
ATTATCAAATTAGCAGACAAGGAAGGATGGGGTGTCGTAAAACACTACAA
ACAAAACCTTCTTCTCTCGACTGGGGACCTCAGTGAGAAACATCTGAAAG
AAGCAAGAAAATCGTTCGAGCAATTCAGATCGAGAATCGAAACAGAGAAA
AAAGCACACAAGGAATCCTCTTTCACTCAAAGTTTAGACGAAATTCAATG
CTTTAACTGCAGACGCATGGGACANGCTTTCGTTATTAATAAGTCCTTTT
ATCAACTTGAGAATACTGGGAGAATTGTCAAGGGGGAATTCTTTTGTCGC
TTTATGGTCATCTGCTTATTTTTGGCCTTTACTCACACCTAATGGCACAA
CTTTCCtgcctttttttaaacaatttcttGTACTTACCTTATTAACAATT
CTAACTGTTGTtgtatttttgatgtttttgcgaGTTTTTATTCGCTAGCT
TTATACATCGTATTTGATGAATGAAACTATTCCAGATTTATTGTCATTTT
TTCTGaacatattttattttctttacatgtcattcttgatattttgacca
tcagcaattttcaaacttttacaaGGAACTTTGCACTGTGGCAAAGACAG
GTGTTATTTTCTGCTTTCTCTTGTTTTTCATGTACGAAACGTTACAATTA
AATTACGGAGTTGAAACAATTTTGGATATCACTGCCACGTTTGCACATAT
CAACTTGGAG Coding sequence (CDS) from alignment at scaffold_143:183157..184666 >TCONS_00048574 ID=TCONS_00048574|Name=TCONS_00048574|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_143:183157..184666 (Clytia hemisphaerica)
atggcaAATCAAGAGCTTCAAGatcaaatcaagaaaattgTCGAGGATGA
ATTAAACAAGGAAGGAAACGTGGTGACAAAGTTACAACAAAGATTAGAAA
GAAAAAGATCATACGACcaaactgaatttgaaaaaaagggcCCCGATGAA
CAATTCAAACATACAATCAATGTTTTGGAAACTGTCGACGACGCTCTGGA
TGCACTTGAAAAGGGTGACAACAACTCAGCAACCGGATTTATGAAACAAG
GTAAGAAACTTTTAGAAGACAGAATTTCCATTATCAAATTAGCAGACAAG
GAAGGATGGGGTGTCGTAAAACACTACAAACAAAACCTTCTTCTCTCGAC
TGGGGACCTCAGTGAGAAACATCTGAAAGAAGCAAGAAAATCGTTCGAGC
AATTCAGATCGAGAATCGAAACAGAGAAAAAAGCACACAAGGAATCCTCT
TTCACTCAAAGTTTAGACGAAATTCAATGCTTTAACTGCAGACGCATGGG
ACANGCTTTCGTTATTAATAAGTCCTTTTATCAACTTGAGAATACTGGGA
GAATTGTCAAGGGGGAATTCTTTTGTCGCTTTATGGTCATCTGCTTATTT
TTGGCCTTTACTCACACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048574-exon-scaffold_143-1491911889:183157..184666 | TCONS_00048574-exon-scaffold_143-1491911889:183157..184666 | Clytia hemisphaerica | exon |
| TCONS_00048574-exon-scaffold_143-1510915933:183157..184666 | TCONS_00048574-exon-scaffold_143-1510915933:183157..184666 | Clytia hemisphaerica | exon |
| TCONS_00048574-exon-scaffold_143-1575043694:183157..184666 | TCONS_00048574-exon-scaffold_143-1575043694:183157..184666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:183157..184666 . |
Blast
The following BLAST results are available for this feature:
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