TCONS_00048575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048575
Unique NameTCONS_00048575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048575 ID=TCONS_00048575|Name=TCONS_00048575|organism=Clytia hemisphaerica|type=transcript|length=828bp
cAGCGCCATCGaaatcatcagaaagcaaagttctaCCCAGTCGTTTATTT
CTGCTTTCTCTATCAAGTCTCGATTGGTAAGTGGATCTGTTTTACTCTTT
CGTGTTTGCTGATATTCATGTCTAAAACCTTCCATTATGTCAATCAAATC
GTTTTTATCATTAGCTACATGGTAGGTTGAAGGCGTTTTTAAAGATCGAT
TAATCGCTAGAACGTCAATAAACTCGTCATATTTCACAATACCGACCGGT
TTTTCCATCATTTGAAAACTATTGATcctcaaaaaatctttaatgtTAGG
TTCAGATGACATTGTTGTTTGTTCGTGGCAGGCCAACACTTCAAGTCTGC
TTACTAAATCTTGTGTAAGCTCGTTTGAAAATTTCGTCGCAACGTTCCGA
TCTTTAACATGGAGATCGGTGTCGCTTTCAAACTCGGAATCATGGACAAG
ATCACTACCAAGAACAATTTCGGAGTTGATTTCAGAAACATTGTGGACAT
CACAGGAGTTGATTTCAGTAACATTGTGGACATCACAGGAGTTGATTTCA
GAAACATTGTGGACATCACAGGAGTTGATTTCAGTAATATTGTGGACATC
ATAGGAGTTGATTTCAGAAACATTGTGGACATCACAGGAGTTGATTTCAG
TAACATTGTGGACATCACAGGAGTTGATTTTAGAAACATTGTGGACATCA
CAGGAGTTGATTTCAGTAACATTGTGGACATCATAGGAGTTGATTTCAGA
AACATTGTGGACATCACAGGAGTTGATTTCAGTAACATTGTGGACATCAC
AGGAGTTGATTTCAGTAATATTGTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00048575-protein

>TCONS_00048575-protein ID=TCONS_00048575-protein|Name=TCONS_00048575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
VHNITEINSCDVHNVTEINSCDVHNVSEINSYDVHNVTEINSCDVHNVSK
INSCDVHNVTEINSCDVHNVSEINSYDVHNITEINSCDVHNVSEINSCDV
HNVTEINSCDVHNVSEINSEIVLGSDLVHDSEFESDTDLHVKDRNVATKF
SNELTQDLVSRLEVLACHEQTTMSSEPNIKDFLRINSFQMMEKPVGIVKY
DEFIDVLAINRSLKTPSTYHVANDKNDLIDIMEGFRHEYQQTRKSKTDPL
TNRDLIEKAEINDWVELCFLMISMAL
Run BLAST on NCBI

transcript from alignment at scaffold_143:187654..188481

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048575 ID=TCONS_00048575|Name=TCONS_00048575|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at scaffold_143:187654..188481 (Clytia hemisphaerica)
GTCCACAATATTACTGAAATCAACTCCTGTGATGTCCACAATGTTACTGA
AATCAACTCCTGTGATGTCCACAATGTTTCTGAAATCAACTCCTATGATG
TCCACAATGTTACTGAAATCAACTCCTGTGATGTCCACAATGTTTCTAAA
ATCAACTCCTGTGATGTCCACAATGTTACTGAAATCAACTCCTGTGATGT
CCACAATGTTTCTGAAATCAACTCCTATGATGTCCACAATATTACTGAAA
TCAACTCCTGTGATGTCCACAATGTTTCTGAAATCAACTCCTGTGATGTC
CACAATGTTACTGAAATCAACTCCTGTGATGTCCACAATGTTTCTGAAAT
CAACTCCGAAATTGTTCTTGGTAGTGATCTTGTCCATGATTCCGAGTTTG
AAAGCGACACCGATCTCCATGTTAAAGATCGGAACGTTGCGACGAAATTT
TCAAACGAGCTTACACAAGATTTAGTAAGCAGACTTGAAGTGTTGGCCTG
CCACGAACAAACAACAATGTCATCTGAACCTAacattaaagattttttga
ggATCAATAGTTTTCAAATGATGGAAAAACCGGTCGGTATTGTGAAATAT
GACGAGTTTATTGACGTTCTAGCGATTAATCGATCTTTAAAAACGCCTTC
AACCTACCATGTAGCTAATGATAAAAACGATTTGATTGACATAATGGAAG
GTTTTAGACATGAATATCAGCAAACACGAAAGAGTAAAACAGATCCACTT
ACCAATCGAGACTTGATAGAGAAAGCAGAAATAAACGACTGGGtagaact
ttgctttctgatgatttCGATGGCGCTg

Coding sequence (CDS) from alignment at scaffold_143:187654..188481

>TCONS_00048575 ID=TCONS_00048575|Name=TCONS_00048575|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_143:187654..188481 (Clytia hemisphaerica)
GTCCACAATATTACTGAAATCAACTCCTGTGATGTCCACAATGTTACTGA
AATCAACTCCTGTGATGTCCACAATGTTTCTGAAATCAACTCCTATGATG
TCCACAATGTTACTGAAATCAACTCCTGTGATGTCCACAATGTTTCTAAA
ATCAACTCCTGTGATGTCCACAATGTTACTGAAATCAACTCCTGTGATGT
CCACAATGTTTCTGAAATCAACTCCTATGATGTCCACAATATTACTGAAA
TCAACTCCTGTGATGTCCACAATGTTTCTGAAATCAACTCCTGTGATGTC
CACAATGTTACTGAAATCAACTCCTGTGATGTCCACAATGTTTCTGAAAT
CAACTCCGAAATTGTTCTTGGTAGTGATCTTGTCCATGATTCCGAGTTTG
AAAGCGACACCGATCTCCATGTTAAAGATCGGAACGTTGCGACGAAATTT
TCAAACGAGCTTACACAAGATTTAGTAAGCAGACTTGAAGTGTTGGCCTG
CCACGAACAAACAACAATGTCATCTGAACCTAacattaaagattttttga
ggATCAATAGTTTTCAAATGATGGAAAAACCGGTCGGTATTGTGAAATAT
GACGAGTTTATTGACGTTCTAGCGATTAATCGATCTTTAAAAACGCCTTC
AACCTACCATGTAGCTAATGATAAAAACGATTTGATTGACATAATGGAAG
GTTTTAGACATGAATATCAGCAAACACGAAAGAGTAAAACAGATCCACTT
ACCAATCGAGACTTGATAGAGAAAGCAGAAATAAACGACTGGGtagaact
ttgctttctgatgatttCGATGGCGCTg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030886XLOC_030886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048575-exon-scaffold_143-1491911889:187654..188481TCONS_00048575-exon-scaffold_143-1491911889:187654..188481Clytia hemisphaericaexon
TCONS_00048575-exon-scaffold_143-1510915933:187654..188481TCONS_00048575-exon-scaffold_143-1510915933:187654..188481Clytia hemisphaericaexon
TCONS_00048575-exon-scaffold_143-1575043694:187654..188481TCONS_00048575-exon-scaffold_143-1575043694:187654..188481Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048575-proteinTCONS_00048575-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:187654..188481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115847	0	0	0	0.077292	0.259212	1.54845	2.76093	0.226949	0.85791	0.429113	0.584302	0.0762363	0.451668	0	0	0.220747	0.357446	0.138138	0.441847	0.940271	0.942127	0.38948	0.881491	0.414848	0.544904	0.202817	0.0892045	0.190844	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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