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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048577 ID=TCONS_00048577|Name=TCONS_00048577|organism=Clytia hemisphaerica|type=transcript|length=1058bp
TCAGTAAGACTAACAAATAAAATATTACAAATAGTCAATCAATGATGTCT
TCAGATGGAAAACTGGCAATAATATCATGTGAAGATGCGCCCAAATGGGG
TGGCCCTGAAGGGGCGCGACGCCTCTGTAAGATGTTCAAGAATCAACCAG
ACGAAACATGGGAATATTTCATGGCGACTGAAGGGGAGATCCCAGATTCT
TCAAAACTTGAGGAATACAAAGGATTTGTTTTAACTGGTTCCCACTACTC
TGCCAATGACCAACATGATTGGATATTAAGACTTGAGAAATTTCTGAAAG
ACGTTTTTGAATATCAAGAAGCTAAGAAACAATGCTCTCCGAAACTTGTT
GGTATTTGTTTTGGTCATCAAATTATGGCAAAATCGCTTGGTGCTAAAGT
TGTGAAAAATAATCAAGGGAAGTTTGTTTTCGAGCTAGGTCAGATAGACG
TTGATCAGGGTTTCAAGGAGaaggaatattatcaaaaagttttcaaggaA
GATCCTTCGTTCTCTATGTTCCAATCGCATTCAGAAGAAGTTAAAGACCT
ACCTTCAGATGTTATCCAGTCAGTTGCACGCTCCGATAAATGTGAACATG
AGATATTAACATACAACAAAGAAGGTGGGTTATCTTTCCAAGGGCACATG
GAAATTACAAGTGAGGAGTGCTTGGAAAAGATTTTACCAGCCATCAAAAA
TGCAGGTGTGTATACTACGGACCAGGAATCGGAAATGAAAGAGACcttga
aaaaaagggaaaatcaaAGAGAACAGGTGGTCACCCTTATAAAAGAGTAC
CTCGAAGAATAGTTACAGTAATGGTAATCAGATTTTTACATTCTTCAGta
aggaaatttgaaaagatataactttactttgaaataataggttaataaaa
atttacctcaagtaaattaattttcgcgagatgagaatacacgtgtttcc
tattagcggattcatgtaaaaaattcacgaaaaacgtcgagaaagtctct
gattggctgaaatattgcatatacaagcatatttttcaaaatgtccagag
tatgagGT Run BLAST on NCBI protein sequence of TCONS_00048577-protein >TCONS_00048577-protein ID=TCONS_00048577-protein|Name=TCONS_00048577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MMSSDGKLAIISCEDAPKWGGPEGARRLCKMFKNQPDETWEYFMATEGEI
PDSSKLEEYKGFVLTGSHYSANDQHDWILRLEKFLKDVFEYQEAKKQCSP
KLVGICFGHQIMAKSLGAKVVKNNQGKFVFELGQIDVDQGFKEKEYYQKV
FKEDPSFSMFQSHSEEVKDLPSDVIQSVARSDKCEHEILTYNKEGGLSFQ
GHMEITSEECLEKILPAIKNAGVYTTDQESEMKETLKKRENQREQVVTLI
KEYLEE Run BLAST on NCBI transcript from alignment at scaffold_143:228356..229413 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048577 ID=TCONS_00048577|Name=TCONS_00048577|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at scaffold_143:228356..229413 (Clytia hemisphaerica)
ACctcatactctggacattttgaaaaatatgcttgtatatgcaatatttc
agccaatcagagactttctcgacgtttttcgtgaattttttacatgaatc
cgctaataggaaacacgtgtattctcatctcgcgaaaattaatttacttg
aggtaaatttttattaacctattatttcaaagtaaagttatatcttttca
aatttccttaCTGAAGAATGTAAAAATCTGATTACCATTACTGTAACTAT
TCTTCGAGGTACTCTTTTATAAGGGTGACCACCTGTTCTCTttgattttc
cctttttttcaagGTCTCTTTCATTTCCGATTCCTGGTCCGTAGTATACA
CACCTGCATTTTTGATGGCTGGTAAAATCTTTTCCAAGCACTCCTCACTT
GTAATTTCCATGTGCCCTTGGAAAGATAACCCACCTTCTTTGTTGTATGT
TAATATCTCATGTTCACATTTATCGGAGCGTGCAACTGACTGGATAACAT
CTGAAGGTAGGTCTTTAACTTCTTCTGAATGCGATTGGAACATAGAGAAC
GAAGGATCTtccttgaaaactttttgataatattccttCTCCTTGAAACC
CTGATCAACGTCTATCTGACCTAGCTCGAAAACAAACTTCCCTTGATTAT
TTTTCACAACTTTAGCACCAAGCGATTTTGCCATAATTTGATGACCAAAA
CAAATACCAACAAGTTTCGGAGAGCATTGTTTCTTAGCTTCTTGATATTC
AAAAACGTCTTTCAGAAATTTCTCAAGTCTTAATATCCAATCATGTTGGT
CATTGGCAGAGTAGTGGGAACCAGTTAAAACAAATCCTTTGTATTCCTCA
AGTTTTGAAGAATCTGGGATCTCCCCTTCAGTCGCCATGAAATATTCCCA
TGTTTCGTCTGGTTGATTCTTGAACATCTTACAGAGGCGTCGCGCCCCTT
CAGGGCCACCCCATTTGGGCGCATCTTCACATGATATTATTGCCAGTTTT
CCATCTGAAGACATCATTGATTGACTATTTGTAATATTTTATTTGTTAGT
CTTACTGA Coding sequence (CDS) from alignment at scaffold_143:228356..229413 >TCONS_00048577 ID=TCONS_00048577|Name=TCONS_00048577|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_143:228356..229413 (Clytia hemisphaerica)
CTATTCTTCGAGGTACTCTTTTATAAGGGTGACCACCTGTTCTCTttgat
tttccctttttttcaagGTCTCTTTCATTTCCGATTCCTGGTCCGTAGTA
TACACACCTGCATTTTTGATGGCTGGTAAAATCTTTTCCAAGCACTCCTC
ACTTGTAATTTCCATGTGCCCTTGGAAAGATAACCCACCTTCTTTGTTGT
ATGTTAATATCTCATGTTCACATTTATCGGAGCGTGCAACTGACTGGATA
ACATCTGAAGGTAGGTCTTTAACTTCTTCTGAATGCGATTGGAACATAGA
GAACGAAGGATCTtccttgaaaactttttgataatattccttCTCCTTGA
AACCCTGATCAACGTCTATCTGACCTAGCTCGAAAACAAACTTCCCTTGA
TTATTTTTCACAACTTTAGCACCAAGCGATTTTGCCATAATTTGATGACC
AAAACAAATACCAACAAGTTTCGGAGAGCATTGTTTCTTAGCTTCTTGAT
ATTCAAAAACGTCTTTCAGAAATTTCTCAAGTCTTAATATCCAATCATGT
TGGTCATTGGCAGAGTAGTGGGAACCAGTTAAAACAAATCCTTTGTATTC
CTCAAGTTTTGAAGAATCTGGGATCTCCCCTTCAGTCGCCATGAAATATT
CCCATGTTTCGTCTGGTTGATTCTTGAACATCTTACAGAGGCGTCGCGCC
CCTTCAGGGCCACCCCATTTGGGCGCATCTTCACATGATATTATTGCCAG
TTTTCCATCTGAAGACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048577-exon-scaffold_143-1491911889:228356..229413 | TCONS_00048577-exon-scaffold_143-1491911889:228356..229413 | Clytia hemisphaerica | exon |
| TCONS_00048577-exon-scaffold_143-1510915933:228356..229413 | TCONS_00048577-exon-scaffold_143-1510915933:228356..229413 | Clytia hemisphaerica | exon |
| TCONS_00048577-exon-scaffold_143-1575043694:228356..229413 | TCONS_00048577-exon-scaffold_143-1575043694:228356..229413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:228356..229413 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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