TCONS_00048512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048512
Unique NameTCONS_00048512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048512 ID=TCONS_00048512|Name=TCONS_00048512|organism=Clytia hemisphaerica|type=transcript|length=420bp
acaaccccgaccgaaagtgactgttcCACCCCTagagattcattcctctt
tgattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattac
gcatgcgtattagtgtctatttgggtgagctggaaacattacatGAACTA
ACTCTAAGTAGTGATTGTTGGCAATTTTCCCTTTTGTGACCAATGACTGA
ATGACGAACTGACGAATGTCTGTTAATGACTGTTGAAACCTCTGCTGAAT
GTTGACTGTCGTCAATTATATTTCCAAAGAATCCGATTAACCTTCACCTC
CAGCTCAAGCTTGCTACgcaaagtttcaaacactacaaaTGACTTCTTCT
CGGGTTACCAACTCTTAAAAAACTATGATCAAAGATGGTAGATATAGCTT
GGTctagggatatataaagg
Run BLAST on NCBI

transcript from alignment at scaffold_143:403428..407571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048512 ID=TCONS_00048512|Name=TCONS_00048512|organism=Clytia hemisphaerica|type=transcript|length=4144bp|location=Sequence derived from alignment at scaffold_143:403428..407571+ (Clytia hemisphaerica)
acaaccccgaccgaaagtgactgttcCACCCCTagagattcattcctctt
tgattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattac
gcatgcgtattagtgtctatttgggtgagctggaaacattacatGAACTA
ACTCTAAGTAGTGATTGTTGGCAATTTTCCCTTTTGTGACCAATGACTGA
ATGACGAACTGACGAATGTCTGTTAATGACTGTTGAAACCTCTGCTGAAT
GTTGACTGTCGTCAATTATATTTCCAAAGAATCCGATTAACCTTCACCTC
CAGCTCAAGCTTGCTACGTAAGTGTGAGATTTATTccattttatcaaaac
aaacactGAAACAGTATAGGGCGGGTAagtaacttttttggggggtatct
tcagatcttcttcgcctggtgttttttctgttccatatagtgatagaaga
catttaaaaacttttttttcaattttatgcatttttgacgaattccagcc
caaaaaactgcccgggggagcttttttgaggtttattcttcatatctctt
ccaaaacttgctcaaactcaagatttagtgtttttttatgaaaatttaac
ctactGTAATGTgatgcattctgcgcaatttttaaggtcataagtccaaa
attggccgaatcCCCCTGGgggtaccgtgagaggtcctaaagccgacagc
ccagcctaattccgaccccccNtgggcctatttgtggtcaaaaaggtgtt
taattttgcataaattaatgcagattgtggggaaattccctgttttccat
cagttttttaccacaaataggcccataaattttgatctagagaagttggg
actttggtgtaatacacttttttgctcagtttgaagagctctatcatgtg
gtatagatttttttttaatttgaagaacccccaaaaatcatgaatttcca
ggccttgcaattttgcctgaaaacgcaaaaaatcgccaattactcgttac
ttgcacgataatatcgtggaaactttttgattttgtaatctacacatact
aattcgcgagtttccgttgttNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gtggcgtttttttgcaaacttcaaaaaactgatttttgtcccgcctttgc
gggactttggcttaagtgcttgagtgcagcatagggtataaagtccaaat
atgtgtttcccgtaatttttgtatgaagagttaggtctatactgtccctc
tccaagttgaacaataaactaattgctagaactctcgaaacaaaacatct
aacaagatagctgtaatgtcaagatgtcaattaatgtaattaaaaaaagt
gcgagttgtaaaaataattaccttttattctggatcagttgctcatgttt
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCCGATCTTATCCATTGATGAtctgcggcactatcgtaaag
ctagaatcgcttcgcgtacttttcgcttgagaaaatgattgacagattga
agtttttcatacCCGCGGTGCGCGCTGCGCGGGAGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattgatgtttgtaagtg
cactttatagttttgattcccattgaagaatcatattctggttttcatgt
tattagatgctgttttagagctttaggtctacactgtttgggtagcaaaa
aatgctgtttaaggccaattttgcaagttcataaactttaaactaattga
ttcacacgtctgaaattttcagagatggaagtcttcagtaaagtctttaa
gcaaaatgaatttcaagattttcactttcgAGTCACTTTTTGAGTCACGT
GAGTCAAATCGcgtgtcttattggactagagaaagttAAAGTGAAATCGC
ACCATCtaattggatgaaaaaattattgtgtGAACTGGGGCTGAATATAa
ttctcattttaaattcaagatggcggcaagAAAAGTACGCTTTTTTGCTT
TGGAAAAAATGTTGtaaatcttttactttttatcgccttaggcaaagttt
caaacactacaaaTGACTTCTTCTCGGGTTACCAACTCTTAAAAAACTAT
GATCAAAGATGGTAGATATAGCTTGGTctagggatatataaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030854XLOC_030854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048512-exon-scaffold_143-1491911889:403428..403744TCONS_00048512-exon-scaffold_143-1491911889:403428..403744Clytia hemisphaericaexon
TCONS_00048512-exon-scaffold_143-1510915933:403428..403744TCONS_00048512-exon-scaffold_143-1510915933:403428..403744Clytia hemisphaericaexon
TCONS_00048512-exon-scaffold_143-1575043694:403428..403744TCONS_00048512-exon-scaffold_143-1575043694:403428..403744Clytia hemisphaericaexon
TCONS_00048512-exon-scaffold_143-1491911889:407469..407571TCONS_00048512-exon-scaffold_143-1491911889:407469..407571Clytia hemisphaericaexon
TCONS_00048512-exon-scaffold_143-1510915933:407469..407571TCONS_00048512-exon-scaffold_143-1510915933:407469..407571Clytia hemisphaericaexon
TCONS_00048512-exon-scaffold_143-1575043694:407469..407571TCONS_00048512-exon-scaffold_143-1575043694:407469..407571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:403428..407571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200513	0	0	0	8.69422	6.32675	4.96055	3.19072	0.68259	3.53546	0	1.56033	0.566465	0.224927	0	0	0	0	0	0	0	0	0	0	4.88179	6.54593	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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