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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048518 ID=TCONS_00048518|Name=TCONS_00048518|organism=Clytia hemisphaerica|type=transcript|length=3217bpRun BLAST on NCBI protein sequence of TCONS_00048518-protein >TCONS_00048518-protein ID=TCONS_00048518-protein|Name=TCONS_00048518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp LDKLVKMSRLIVKNLPEKIKEEKFREIFSSAGQITDLKLCFTRKGIFRKFRun BLAST on NCBI transcript from alignment at scaffold_143:454458..471666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048518 ID=TCONS_00048518|Name=TCONS_00048518|organism=Clytia hemisphaerica|type=transcript|length=17209bp|location=Sequence derived from alignment at scaffold_143:454458..471666+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:454458..471666+ >TCONS_00048518 ID=TCONS_00048518|Name=TCONS_00048518|organism=Clytia hemisphaerica|type=CDS|length=15912bp|location=Sequence derived from alignment at scaffold_143:454458..471666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048518 vs. Swiss-Prot (Human)
Match: RBM19 (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3) HSP 1 Score: 422.55 bits (1085), Expect = 5.958e-130 Identity = 278/669 (41.55%), Postives = 387/669 (57.85%), Query Frame = 2
Query: 20 MSRLIVKNLPXXXXXXXXXXXXSSAGQITDLKLCFTRKGIFRKFGFVGYQNETDAKNALNQLDKTFINTNKISIEICKDLGDDTAPRAWSKYSKDSSAHSRKTKEIQERKDRIKKLQXXXXXXXXXXXXXXXXXXXXXXXXXDVEEDEGFQEFLEVHGG-SKNKTWTDQTVAPNSAKEVELQTTGEPTQQKANEIEMEGDDDSDVDTMNADSANLEEPAEVEQIKTEVATKEVDTALSSKKTSDLDWLKSKVXXXXXXXXXXXXXXXXXXXX----QPMEENENESPQXXXXXXXXXXXQETNDP---------------PVSLDTCTTVKSATLKLRGVPFKCTEADVIQFFKPLNILDIRFPKDKKDRPSGYAFVDFADRQAAQDAMKKNGKKMKGRYIELFTEVNDKPSDGNKKYNKSGEWLNK---SDEPVDDISESGRLFIRNLPYTCTEEDIQTLFEKYGTLSEINLPIDKNNNKATGFAFVTFMMPEHAVKALSALDGKIFQGRLLHLLPGRAQKSKVNKDGESGEMTSSYKKKKEVDQKSLSGSSHNWNALFLGANAVADVMADRLNTTKKNILDSEGSGSVAVRMALGETELVTETRQFLESHGVKLDVFGQATTARSKNILLVKNLPPGTTTKELLDLFSQHGDLGRLLMPPFGITAIV 1957
MSRLIVKNLP +KEE+FR++F++ G +TD L FT+ G FRKFGF+G+++E +A+ A +K+FI+T++I++E CK GD PRAWSK+++ S + K+ E KK K KKV QLE ++ED FQEFL VH ++ TW + + EP++ K+ SD ++DS E + E A+ E A+ K+ SD+D+LKSK+ K S++ E + + EE ++ + +++ K + QE P P + TT T+KLRG PF TE +V++F PL + IR ++ +GY FVDF++ + + A+K N + M GRYIE+F E N + G K N + W + +E +D++ESGRLF+RNLPYT TEED++ LF KYG LSE++ PID K GFAF+TFM PEHAVKA S +DG++FQGR+LH+LP +K + ++D S +SSYKKKKE K+ S SSHNWN LF+G NAVAD +A + N TK + D E GSVAVR+ALGET+LV E R+FL +GV LD F QA RSK ++LVKNLP GT +L + F G LGR+L+P GITAIV
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKD-----------------STTPEIKKDEKKKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGL------------DAEPSKGKSKPA-------SDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQ-KELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCH--TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPK-NTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKK-EASEDA-SALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAAERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIV 627 HSP 2 Score: 311.227 bits (796), Expect = 1.694e-89 Identity = 166/321 (51.71%), Postives = 211/321 (65.73%), Query Frame = 1
Query: 1969 GDLGRLLMPPFGITAIVEYITQTDAKKAFINLAYSKFKHLPLYLEWAPLDVLSGEITAK--------------PESQETNKDAXXXXXXXXXXXXXXXX----------------------IFVKNLNFNTTEEKLKEVFLKCGKLRQVTVAKKKDPKRAGQMLSMGYGFVEYKRKAYADKAIKLLQNVDLDNHKLELKKSHRETTGSKT-SRKRAVDKEQTTSKIIVRNVPFEATEKEIKELFSSFGHIKSVRLPKKMAGTGTHRGFAFVDFTTKQDAKTAFQALCQSTHLYGRRLVLEWAEEDESIQTLRHKTAQHYHE 2820
G LGR+L+P GITAIVE++ +A+KAF +LAYSKF H+PLYLEWAP+ V S K P ET D E E S +F+KNLNF+TTEEKLKEVF K G ++ +++KKK+ +AG +LSMG+GFVEY++ A KA+K LQ +D HKLE++ S R T + T +RK+ V ++QTTSKI+VRN+PF+A +EI+ELFS+FG +K+VRLPKKM GTGTHRGF FVDF TKQDAK AF ALC STHLYGRRLVLEWA+ + ++Q LR KTA H+HE
Sbjct: 611 GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKN--KAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKTAAHFHE 929 The following BLAST results are available for this feature:
BLAST of TCONS_00048518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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