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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048567 ID=TCONS_00048567|Name=TCONS_00048567|organism=Clytia hemisphaerica|type=transcript|length=3365bpRun BLAST on NCBI protein sequence of TCONS_00048567-protein >TCONS_00048567-protein ID=TCONS_00048567-protein|Name=TCONS_00048567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1121bp ETSKRANSTAGHWQTSTNYQQTQMLHSSRTFSKRNMNEPKGVDGIDKTKPRun BLAST on NCBI transcript from alignment at scaffold_143:489362..502692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048567 ID=TCONS_00048567|Name=TCONS_00048567|organism=Clytia hemisphaerica|type=transcript|length=13331bp|location=Sequence derived from alignment at scaffold_143:489362..502692- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:489362..502692- >TCONS_00048567 ID=TCONS_00048567|Name=TCONS_00048567|organism=Clytia hemisphaerica|type=CDS|length=43719bp|location=Sequence derived from alignment at scaffold_143:489362..502692- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048567 vs. Swiss-Prot (Human)
Match: EST1A (Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 5.179e-37 Identity = 97/285 (34.04%), Postives = 146/285 (51.23%), Query Frame = 2
Query: 2501 GDLERYVTHLQQDNNYCQAQKCYREAQMLAPKNGKSYNQLAVVAVTTKRKLDAVYYYCRSLSASNPILTARDRLTSIFHEIKKKAHVFKQRYEQQSINKEEVILQERADKLNPNHLR-DEIWIFIHLHQMYKVMLTDNNELVYLTQPPLKNHSSVTDTAVVKKKPLSRTTSRQDKLSLSKINRGYTIYFLHIHCKLYTNIGLEEFTRVHQETLSYFKTLLQYPKASSVKQENLLKYMAINIFSIHMLIEKQQGLQEVMANTALDFAIVFAVDMFGVLCSHCSKLL 3352
GD+ RY NY +A+ Y +AQ +APKNG+ YNQLA++AV T+RKLDAVYYY RSL+ASNPILTA++ L S+F E K+KA +++ ++ L+P+ R + F H+ D L P S T++ S + LS S +N+ + + FLH H KL+T IG+E F V ++ L F+ LLQ+ S + +L+ M IN+F++H + + E + + A + MF +L C+ LL
Sbjct: 733 GDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEF-------------DLSPDQWRKGKKSTFRHVGD-------DTTRLEIWIHPSHPRSSQGTESGKD-----SEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQH-SPSPIGSTRMLQLMTINMFAVHN-SQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLL 990 HSP 2 Score: 150.214 bits (378), Expect = 1.789e-36 Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2
Query: 1694 QLYKELIVHFQEYSFKHDFETALWKSAYHNIITKFRDIVDSTKNIEKDKLQEVGDLYWKFLQNGIQFLDELVVLLQEHSNFDLQEILDD-PVKMHHCGKQVKLALRSCHLLLIYIGDLERYVTHLQQDNNYCQAQKCYREAQMLAPKNGKSYNQLAVVAVTTKRKLDAVYYYCRSLSASNPILTARDRLTSIFHEIKKKAHVFKQR 2308
QLY+ I+ E+S + + LWK+A++ +I KFR +V N+E +++ + + L G F D L+ LQ F L++ +D ++ K VK AL S +I GD+ RY NY +A+ Y +AQ +APKNG+ YNQLA++AV T+RKLDAVYYY RSL+ASNPILTA++ L S+F E K+KA +++
Sbjct: 621 QLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDP-NVENP--EQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKK 823 The following BLAST results are available for this feature:
BLAST of TCONS_00048567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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