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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048598 ID=TCONS_00048598|Name=TCONS_00048598|organism=Clytia hemisphaerica|type=transcript|length=1411bp
aacgtttggaattaaccctgagattttttttcgaaacattaaagaggaag
aaaaatgtgatcgaacaaaaaaagaaccactTCAAAATGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACTtcaaaatgtcttttat
tcattgagttatttaatctttaatttctcacaattttgactctacaatgg
agaaaaactccccctctgttgattttgtgacgtcacatgCGCCCCAACTA
TTCTTACTGTTACACTCTACTTGGTTGTATAAGAGATAAAAAACATAaga
aattaatcttttttagagtaGTTATAGCAAAACGTTGAAGAAATAATACT
AGGAGAGTCTAGTTAGTATTCCAAAGGTGCAATGAACTTTCTAACGgtaa
aaagaaactcaaaaactGCATTTTAAATCATCATTCACCACTCTTCcctt
ttataaaaaagagaaacacaggGCGTGTGCTACGTCACATTTTTCGTATC
CATAGCAACGCAAGGGAATTTTCAAACAACTCTTATTCCGNAAGAGAAAC
ACAGGGCGTGTGCTACGTCACATTTTTCGTATCCATAGCAACGCAAGGGA
ATTTTCAAACAACTCTTATTCCGGATGTAGAATAGTAAAGCCCTATAAAc
gatatatatttgaaattgtctcaatgagctctatttgaatctgtaattta
tttgttgacaattttgaaacgttaattcccctttaaaaACCTTTGTatgt
tggagaaaatgcaaaaaatacattttgagaAAACTTAATACATACCTTGA
CATACCAGAAAATCAGAGAATAATAAATTGTTTTTAGTTGGGAACTTGTG
TTTAAGTGCCATTAAAGAAAGCACTGGACGCTTTTATTTGCCCTTCCTGC
TTAAAATGTAATTGTTCtaaaaagtttcctttttatGGCTGATCAGTACA
GtaaaatatttgcaaattttatttaGCTATTTTACTGTATTTTTGCAAAG
AAATCATTGGCAATttcgtaaaccagaaaataaaaaaataaatgccTAAG
ATTTTAAAGACCAGCAGCGttaagttttttaaaattaGATGAGATTTTTT
GGGTattctaaaaactttttagaTTTCCAGATAACTTTAGGCAATCTAAA
TGCAAGTTTGTCTTTGCAAagatacaaacaaaaaatagcattttttaggG
GACGTTGGTACATTTTGTGAAAAGGGGGAAAGCTATACACAGAATAGGTA
GATTTATAAAGGGAGGGTCAAAGACCACTCTGTATTGCTAATGCTTAGAA
GAATGGAAACCTGTGAGGCTTACCAAAGaaggatttaaaaaatgtagtAG
TGTAGAAAAAC Run BLAST on NCBI transcript from alignment at scaffold_144:8856..10266 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048598 ID=TCONS_00048598|Name=TCONS_00048598|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_144:8856..10266 (Clytia hemisphaerica)
GTTTTTCTACACTactacattttttaaatccttCTTTGGTAAGCCTCACA
GGTTTCCATTCTTCTAAGCATTAGCAATACAGAGTGGTCTTTGACCCTCC
CTTTATAAATCTACCTATTCTGTGTATAGCTTTCCCCCTTTTCACAAAAT
GTACCAACGTCCcctaaaaaatgctattttttgtttgtatctTTGCAAAG
ACAAACTTGCATTTAGATTGCCTAAAGTTATCTGGAAAtctaaaaagttt
ttagaatACCCAAAAAATCTCATCtaattttaaaaaacttaaCGCTGCTG
GTCTTTAAAATCTTAggcatttatttttttattttctggtttacgaaATT
GCCAATGATTTCTTTGCAAAAATACAGTAAAATAGCtaaataaaatttgc
aaatattttaCTGTACTGATCAGCCataaaaaggaaactttttaGAACAA
TTACATTTTAAGCAGGAAGGGCAAATAAAAGCGTCCAGTGCTTTCTTTAA
TGGCACTTAAACACAAGTTCCCAACTAAAAACAATTTATTATTCTCTGAT
TTTCTGGTATGTCAAGGTATGTATTAAGTTTtctcaaaatgtattttttg
cattttctccaacatACAAAGGTttttaaaggggaattaacgtttcaaaa
ttgtcaacaaataaattacagattcaaatagagctcattgagacaatttc
aaatatatatcgTTTATAGGGCTTTACTATTCTACATCCGGAATAAGAGT
TGTTTGAAAATTCCCTTGCGTTGCTATGGATACGAAAAATGTGACGTAGC
ACACGCCCTGTGTTTCTCTTNCGGAATAAGAGTTGTTTGAAAATTCCCTT
GCGTTGCTATGGATACGAAAAATGTGACGTAGCACACGCcctgtgtttct
cttttttataaaaggGAAGAGTGGTGAATGATGATTTAAAATGCagtttt
tgagtttctttttacCGTTAGAAAGTTCATTGCACCTTTGGAATACTAAC
TAGACTCTCCTAGTATTATTTCTTCAACGTTTTGCTATAACtactctaaa
aaagattaatttctTATGTTTTTTATCTCTTATACAACCAAGTAGAGTGT
AACAGTAAGAATAGTTGGGGCGcatgtgacgtcacaaaatcaacagaggg
ggagtttttctccattgtagagtcaaaattgtgagaaattaaagattaaa
taactcaatgaataaaagacattttgaAGTGGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGACATTTTGAagtggttctttttttgttcg
atcacatttttcttcctctttaatgtttcgaaaaaaaatctcagggttaa
ttccaaacgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048598-exon-scaffold_144-1491911889:8856..10266 | TCONS_00048598-exon-scaffold_144-1491911889:8856..10266 | Clytia hemisphaerica | exon |
| TCONS_00048598-exon-scaffold_144-1510915933:8856..10266 | TCONS_00048598-exon-scaffold_144-1510915933:8856..10266 | Clytia hemisphaerica | exon |
| TCONS_00048598-exon-scaffold_144-1575043694:8856..10266 | TCONS_00048598-exon-scaffold_144-1575043694:8856..10266 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_144 | supercontig | scaffold_144:8856..10266 . |
Blast
The following BLAST results are available for this feature:
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