TCONS_00048699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048699
Unique NameTCONS_00048699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048699 ID=TCONS_00048699|Name=TCONS_00048699|organism=Clytia hemisphaerica|type=transcript|length=276bp
GCAGATGTTGTTTACCTTGATTTCTCAAAGGCTTTCGACAAAGTCGATCA
TGCAGTTGTACTTGGGAAATTAAAGCAATTGGGTATATCCGGACCAATTC
ACAGATGGATTGAATCATTCCTTACtgaaagatatcaaacagtAATAGTA
AATGGTGTCAAGTCCAAAGCCCAGGAAGTAATTTCAGGAGTCCCTCAAGG
CAGTGTATTGGGACCTCTTATATTTCTAATATTGATTGGTGACATTGATG
AAAAAGTACTGTACTGTATATTGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_145:40607..40882

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048699 ID=TCONS_00048699|Name=TCONS_00048699|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_145:40607..40882 (Clytia hemisphaerica)
TTTCAATATACAGTACAGTACTTTTTCATCAATGTCACCAATCAATATTA
GAAATATAAGAGGTCCCAATACACTGCCTTGAGGGACTCCTGAAATTACT
TCCTGGGCTTTGGACTTGACACCATTTACTATTactgtttgatatctttc
aGTAAGGAATGATTCAATCCATCTGTGAATTGGTCCGGATATACCCAATT
GCTTTAATTTCCCAAGTACAACTGCATGATCGACTTTGTCGAAAGCCTTT
GAGAAATCAAGGTAAACAACATCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030944XLOC_030944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048699-exon-scaffold_145-1491911889:40607..40882TCONS_00048699-exon-scaffold_145-1491911889:40607..40882Clytia hemisphaericaexon
TCONS_00048699-exon-scaffold_145-1510915933:40607..40882TCONS_00048699-exon-scaffold_145-1510915933:40607..40882Clytia hemisphaericaexon
TCONS_00048699-exon-scaffold_145-1575043694:40607..40882TCONS_00048699-exon-scaffold_145-1575043694:40607..40882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:40607..40882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.31471	7.37611	4.6125	0	5.28276	2.98766	4.33299	0.664718	4.66393	2.9586	1.30146	7.70219	5.40534	7.00631	2.48613	3.57492	0.95286	0.775722	0	3.34502	3.96234	9.64889	1.42106	1.18665	0.707042	3.77337	2.47536	2.3779	5.39053	4.17353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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