TCONS_00048703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048703
Unique NameTCONS_00048703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048703 ID=TCONS_00048703|Name=TCONS_00048703|organism=Clytia hemisphaerica|type=transcript|length=448bp
ATGGAATCCTTCATTGAAAGAAGCATACTTTGCCTTATCCAAAATGAGCG
TATTAGTCTGGAATGAAATATCCTACAAGGCTCTAAACTGATTTTTTACG
TTATATGTGATATGTCGTTACGTCTATGCCTTAAAATAAGCTCAGATAGA
GCCTCAAAGGATTAATAATTCCATTTTCCGAAAAGTTGGGGCTGGGGTTG
GGTGCACCACTTCAATCGCTTTAAATTGGAGTTTTTAATCCTAAAACGCT
CGTGAAACCGCACTTTTTGGTATCTGAGAGTGTTTTAGCGTAAAGTGCAA
TTgacttttgattgattttagaTTGTAATCAGCCCATTTTAAAGATGAAA
TGTATCTTTTATAATTGTCCAAGTTCAGAGATGTTTTCCGGATGGAATTT
CGGATCCAAAAGTGCTCTTCATCATTGTTTCATAAAATATGGAGATCG
Run BLAST on NCBI

transcript from alignment at scaffold_145:92750..93197

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048703 ID=TCONS_00048703|Name=TCONS_00048703|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_145:92750..93197 (Clytia hemisphaerica)
CGATCTCCATATTTTATGAAACAATGATGAAGAGCACTTTTGGATCCGAA
ATTCCATCCGGAAAACATCTCTGAACTTGGACAATTATAAAAGATACATT
TCATCTTTAAAATGGGCTGATTACAAtctaaaatcaatcaaaagtcAATT
GCACTTTACGCTAAAACACTCTCAGATACCAAAAAGTGCGGTTTCACGAG
CGTTTTAGGATTAAAAACTCCAATTTAAAGCGATTGAAGTGGTGCACCCA
ACCCCAGCCCCAACTTTTCGGAAAATGGAATTATTAATCCTTTGAGGCTC
TATCTGAGCTTATTTTAAGGCATAGACGTAACGACATATCACATATAACG
TAAAAAATCAGTTTAGAGCCTTGTAGGATATTTCATTCCAGACTAATACG
CTCATTTTGGATAAGGCAAAGTATGCTTCTTTCAATGAAGGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030948XLOC_030948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048703-exon-scaffold_145-1491911889:92750..93197TCONS_00048703-exon-scaffold_145-1491911889:92750..93197Clytia hemisphaericaexon
TCONS_00048703-exon-scaffold_145-1510915933:92750..93197TCONS_00048703-exon-scaffold_145-1510915933:92750..93197Clytia hemisphaericaexon
TCONS_00048703-exon-scaffold_145-1575043694:92750..93197TCONS_00048703-exon-scaffold_145-1575043694:92750..93197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:92750..93197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78131	0.579019	3.19341	2.46651	0.400366	0	0.381692	1.60801	0.750538	0.619775	0	0.494309	1.08597	1.33284	1.43294	2.0805	0.445741	0.799522	0.946786	1.65124	0.861135	0.630048	0	0.928425	0	0.711197	0.610632	0.217228	0.329519	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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