TCONS_00048708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048708
Unique NameTCONS_00048708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048708 ID=TCONS_00048708|Name=TCONS_00048708|organism=Clytia hemisphaerica|type=transcript|length=448bp
ACACAGTGTCCATAAATGGGAATTCAATAATTTTGACCCAATATTTAACa
tgatatttaaaaaatttgattccCTTATTTTATGGATACCCTGTATGTAA
TCTACTATCTGTACCCAGACTAGAATTTGgattttaattaattaataaat
CACTTATACTTTTTTCGGGCGAGAGTTATCTTGATCATacggaaaataat
tttctccttTTCCTGTGTAGGTTAAAATGGTGTTTGGTTAAAATAAGGAG
CTAAAAGGTGTGACGATATAAAAAATCAACTGAAATTTCAGGAATTTCTC
GGAACTTTCGAAAGATGAAGTATAATAAATAATGATTACCTAAAAATACA
GAATTCAtactttgtaataaaaaaaaaaataaaaacgaaattataacaaa
gaaaaagatcaaaatcaaattaattagAAACACATCCAACTCAAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_145:182673..183120

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048708 ID=TCONS_00048708|Name=TCONS_00048708|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_145:182673..183120 (Clytia hemisphaerica)
TTACTTGAGTTGGATGTGTTTctaattaatttgattttgatctttttctt
tgttataatttcgtttttatttttttttttattacaaagtaTGAATTCTG
TATTTTTAGGTAATCATTATTTATTATACTTCATCTTTCGAAAGTTCCGA
GAAATTCCTGAAATTTCAGTTGATTTTTTATATCGTCACACCTTTTAGCT
CCTTATTTTAACCAAACACCATTTTAACCTACACAGGAAaaggagaaaat
tattttccgtATGATCAAGATAACTCTCGCCCGAAAAAAGTATAAGTGat
ttattaattaattaaaatcCAAATTCTAGTCTGGGTACAGATAGTAGATT
ACATACAGGGTATCCATAAAATAAGggaatcaaattttttaaatatcatG
TTAAATATTGGGTCAAAATTATTGAATTCCCATTTATGGACACTGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030953XLOC_030953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048708-exon-scaffold_145-1491911889:182673..183120TCONS_00048708-exon-scaffold_145-1491911889:182673..183120Clytia hemisphaericaexon
TCONS_00048708-exon-scaffold_145-1510915933:182673..183120TCONS_00048708-exon-scaffold_145-1510915933:182673..183120Clytia hemisphaericaexon
TCONS_00048708-exon-scaffold_145-1575043694:182673..183120TCONS_00048708-exon-scaffold_145-1575043694:182673..183120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:182673..183120 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.144755	0.504222	0	0.600549	0.316374	1.33592	0.893339	0.250179	0.154944	1.35353	0.692033	0.394898	0.410105	0.252872	0.27137	0	0.114217	0.473393	0.660495	0.287045	1.68013	0.170201	0.309475	0.159376	0	1.8319	1.30337	0.823798	1.00718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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