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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048715 ID=TCONS_00048715|Name=TCONS_00048715|organism=Clytia hemisphaerica|type=transcript|length=934bp
GAGGAGTTAggaaaaattcttcaaagaacAAATATTTTCTCCCCCTTATA
ACACTCTTAGTATTTGTGAAAATCTCATTCGATGTTAGAAAGCCATTGAC
TTCAGTTAAGTCAACGCACTTTCTCCGATACAATCAAAATAGTGTGTCCA
GCTCAAAATATGATCAAGATCTTCACCTTGTTAATCCTAACTTGCTTCAG
AGCAAACACATCACCTTTGAGAAGAAGTCAAGATTATGATGATGGTTTAG
CCAAAAGTGCGCTGGAAATGCAATCTCTCTTGGACGACAACTTCCAAGAT
TGGGGAAATAAAAAGCGAGAAATGGGCAACAAAATTGGAAGTATATCGTT
CGTTGAAGGATTGAAGATCAGTggaaataaagagaaaagatcGGAAGTAC
GAAAAGAAGAAGATTTAGCGTATGGCAGTGGAGACAGATTCAACAATTTC
GAAACAAAACACAAGAGACAGAATAATATAATGAATGGCTATTCTAAAAG
AGGAAAAAACCTGACTACTTCATTGGAGATGTTCTATCCTATAAAATAGC
TGGTCtgaacaataaactaaaaactacatgaaaaatTACATCGAAGGAAT
ACTTCTTTCATATAATTTCAAAGTCCAAAATGATCGTGAAAATTAGGAAA
ATTAtcgatttttgtaaaacctttttCTTTGCTTGATTTAATACCATTAG
TATACTTGTAAATCCTGATGGCTACCTTTATTGTATTATGTCTATAATGA
GTTTAACCAGATGTCCTTCCTAGCTTTAACATGTTCTTTATTTAAATGCT
AATCTACAGCTGTCTATTAATTGGACCAATATATAGGGTGACACAATTGC
CCCCGTGACGATGCCCCCGGACTATTGCCCCAGGACAATTTCATTATgaa
gatattttgaagttttgtgAATAAAATTTTAATG Run BLAST on NCBI protein sequence of TCONS_00048715-protein >TCONS_00048715-protein ID=TCONS_00048715-protein|Name=TCONS_00048715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MIKIFTLLILTCFRANTSPLRRSQDYDDGLAKSALEMQSLLDDNFQDWGN
KKREMGNKIGSISFVEGLKISGNKEKRSEVRKEEDLAYGSGDRFNNFETK
HKRQNNIMNGYSKRGKNLTTSLEMFYPIK Run BLAST on NCBI transcript from alignment at scaffold_145:344399..345332 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048715 ID=TCONS_00048715|Name=TCONS_00048715|organism=Clytia hemisphaerica|type=transcript|length=934bp|location=Sequence derived from alignment at scaffold_145:344399..345332 (Clytia hemisphaerica)
CATTAAAATTTTATTcacaaaacttcaaaatatcttcATAATGAAATTGT
CCTGGGGCAATAGTCCGGGGGCATCGTCACGGGGGCAATTGTGTCACCCT
ATATATTGGTCCAATTAATAGACAGCTGTAGATTAGCATTTAAATAAAGA
ACATGTTAAAGCTAGGAAGGACATCTGGTTAAACTCATTATAGACATAAT
ACAATAAAGGTAGCCATCAGGATTTACAAGTATACTAATGGTATTAAATC
AAGCAAAGaaaaaggttttacaaaaatcgaTAATTTTCCTAATTTTCACG
ATCATTTTGGACTTTGAAATTATATGAAAGAAGTATTCCTTCGATGTAat
ttttcatgtagtttttagtttattgttcaGACCAGCTATTTTATAGGATA
GAACATCTCCAATGAAGTAGTCAGGTTTTTTCCTCTTTTAGAATAGCCAT
TCATTATATTATTCTGTCTCTTGTGTTTTGTTTCGAAATTGTTGAATCTG
TCTCCACTGCCATACGCTAAATCTTCTTCTTTTCGTACTTCCgatctttt
ctctttatttccACTGATCTTCAATCCTTCAACGAACGATATACTTCCAA
TTTTGTTGCCCATTTCTCGCTTTTTATTTCCCCAATCTTGGAAGTTGTCG
TCCAAGAGAGATTGCATTTCCAGCGCACTTTTGGCTAAACCATCATCATA
ATCTTGACTTCTTCTCAAAGGTGATGTGTTTGCTCTGAAGCAAGTTAGGA
TTAACAAGGTGAAGATCTTGATCATATTTTGAGCTGGACACACTATTTTG
ATTGTATCGGAGAAAGTGCGTTGACTTAACTGAAGTCAATGGCTTTCTAA
CATCGAATGAGATTTTCACAAATACTAAGAGTGTTATAAGGGGGAGAAAA
TATTTgttctttgaagaatttttccTAACTCCTC Coding sequence (CDS) from alignment at scaffold_145:344399..345332 >TCONS_00048715 ID=TCONS_00048715|Name=TCONS_00048715|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_145:344399..345332 (Clytia hemisphaerica)
CTATTTTATAGGATAGAACATCTCCAATGAAGTAGTCAGGTTTTTTCCTC
TTTTAGAATAGCCATTCATTATATTATTCTGTCTCTTGTGTTTTGTTTCG
AAATTGTTGAATCTGTCTCCACTGCCATACGCTAAATCTTCTTCTTTTCG
TACTTCCgatcttttctctttatttccACTGATCTTCAATCCTTCAACGA
ACGATATACTTCCAATTTTGTTGCCCATTTCTCGCTTTTTATTTCCCCAA
TCTTGGAAGTTGTCGTCCAAGAGAGATTGCATTTCCAGCGCACTTTTGGC
TAAACCATCATCATAATCTTGACTTCTTCTCAAAGGTGATGTGTTTGCTC
TGAAGCAAGTTAGGATTAACAAGGTGAAGATCTTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048715-exon-scaffold_145-1491911889:344399..345332 | TCONS_00048715-exon-scaffold_145-1491911889:344399..345332 | Clytia hemisphaerica | exon |
| TCONS_00048715-exon-scaffold_145-1510915933:344399..345332 | TCONS_00048715-exon-scaffold_145-1510915933:344399..345332 | Clytia hemisphaerica | exon |
| TCONS_00048715-exon-scaffold_145-1575043694:344399..345332 | TCONS_00048715-exon-scaffold_145-1575043694:344399..345332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:344399..345332 . |
Blast
The following BLAST results are available for this feature:
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