TCONS_00048721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048721
Unique NameTCONS_00048721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048721 ID=TCONS_00048721|Name=TCONS_00048721|organism=Clytia hemisphaerica|type=transcript|length=213bp
GACAAAAACTGTATATTCCCTAACCGTTCAGAAAACCTGAAATCGagata
aaatcaagaaaacaatagactgttttaattaattaaaaattaGTTAAAAT
AATCTATCGCTTTCTTAATTTTATCTGACCACACAGGCTCCTGGCGGTCA
GAGGGAGGACCATCACAACGTTTTAAGGATCTGTACCGTGAATGTCTTTG
TGTAACTGATcca
Run BLAST on NCBI

transcript from alignment at scaffold_145:429541..429753

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048721 ID=TCONS_00048721|Name=TCONS_00048721|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at scaffold_145:429541..429753 (Clytia hemisphaerica)
tggATCAGTTACACAAAGACATTCACGGTACAGATCCTTAAAACGTTGTG
ATGGTCCTCCCTCTGACCGCCAGGAGCCTGTGTGGTCAGATAAAATTAAG
AAAGCGATAGATTATTTTAACtaatttttaattaattaaaacagtctatt
gttttcttgattttatctCGATTTCAGGTTTTCTGAACGGTTAGGGAATA
TACAGTTTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030966XLOC_030966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048721-exon-scaffold_145-1491911889:429541..429753TCONS_00048721-exon-scaffold_145-1491911889:429541..429753Clytia hemisphaericaexon
TCONS_00048721-exon-scaffold_145-1510915933:429541..429753TCONS_00048721-exon-scaffold_145-1510915933:429541..429753Clytia hemisphaericaexon
TCONS_00048721-exon-scaffold_145-1575043694:429541..429753TCONS_00048721-exon-scaffold_145-1575043694:429541..429753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:429541..429753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37753	0	0	0	66.8761	41.1028	19.4813	16.5801	3.48244	14.3786	6.97809	4.58712	0	0	1.56441	3.3577	4.13641	4.23969	4.39302	4.59698	3.99561	1.94892	0	2.87189	1.47899	7.91977	0	2.01584	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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