TCONS_00048722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048722
Unique NameTCONS_00048722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048722 ID=TCONS_00048722|Name=TCONS_00048722|organism=Clytia hemisphaerica|type=transcript|length=557bp
ATGAGGAACCAAGTCACATCAGCTTACCTCTTGGAAATCCTATCCAAAGC
AGACCGTTCCTACTCAACCGTACAAGTGTTATTCAACTCCTGTCTCTCAG
CAAACCTTGACGTCATCGATGTAATTCTTAATCCGAAAAAATACAAACTA
ACTACCATAGATGAATTGGCCCCCGACACTAGAAATAGATTCTCCTACTT
GCTATCCAACTGAGGAAAGTTATTTTATATATAAAACTCAATGTtgtgaa
cttttcttaatatataTTAAACTTTCATAATTAGGCCTAGTTTACTCTGA
GCTTTTTCCTCCACAGGTAATTcccttttgtttacttttttctccATGTT
TGTGGTAGCctagttttcaatttctttctaTTTCTCCCGCCCGTCAGTTT
CACGCAGGGAATCACCCACGGTAGatcctttgtttttcaataacatagtc
tatttttagtttattaaaaaaacgaaaacacTGTAGATAAACCTTGTTAT
TTTACTTAGTTTATACCATATTatttggtgataaaagagatataaataaa
aaataaa
Run BLAST on NCBI

transcript from alignment at scaffold_145:439544..440100

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048722 ID=TCONS_00048722|Name=TCONS_00048722|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at scaffold_145:439544..440100 (Clytia hemisphaerica)
tttattttttatttatatctcttttatcaccaaatAATATGGTATAAACT
AAGTAAAATAACAAGGTTTATCTACAgtgttttcgtttttttaataaact
aaaaatagactatgttattgaaaaacaaaggatCTACCGTGGGTGATTCC
CTGCGTGAAACTGACGGGCGGGAGAAAtagaaagaaattgaaaactagGC
TACCACAAACATggagaaaaaagtaaacaaaagggAATTACCTGTGGAGG
AAAAAGCTCAGAGTAAACTAGGCCTAATTATGAAAGTTTAAtatatatta
agaaaagttcacaACATTGAGTTTTATATATAAAATAACTTTCCTCAGTT
GGATAGCAAGTAGGAGAATCTATTTCTAGTGTCGGGGGCCAATTCATCTA
TGGTAGTTAGTTTGTATTTTTTCGGATTAAGAATTACATCGATGACGTCA
AGGTTTGCTGAGAGACAGGAGTTGAATAACACTTGTACGGTTGAGTAGGA
ACGGTCTGCTTTGGATAGGATTTCCAAGAGGTAAGCTGATGTGACTTGGT
TCCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030967XLOC_030967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048722-exon-scaffold_145-1491911889:439544..440100TCONS_00048722-exon-scaffold_145-1491911889:439544..440100Clytia hemisphaericaexon
TCONS_00048722-exon-scaffold_145-1510915933:439544..440100TCONS_00048722-exon-scaffold_145-1510915933:439544..440100Clytia hemisphaericaexon
TCONS_00048722-exon-scaffold_145-1575043694:439544..440100TCONS_00048722-exon-scaffold_145-1575043694:439544..440100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:439544..440100 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203895	0.19883	0.11543	0.338791	0.962374	0.43456	0.13107	0.736235	0.859092	0.638475	1.13615	0.475275	0.406813	0.563305	0.521003	1.11823	0.688785	0.235327	0.541862	1.02064	0.985687	1.58659	0.818237	0.743896	0.109457	0	1.53769	0.74594	1.01838	0.691715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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