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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048723 ID=TCONS_00048723|Name=TCONS_00048723|organism=Clytia hemisphaerica|type=transcript|length=2343bp
NNCCAGGCCTAAAAATCGATTTTCAACGGACCTCCTTTGGACAAAAAGAC
AACCCATTTTTGCAACTGCTGAGAAGAAAATTGTTCGAATTGTTAACGGA
GAATTTGATGAGGGAGAAACCAACCAAATGGACATGCGGTGGAATATTTT
AAACTTCAAGCATGTATTTGACCGGGATGCTGCTAATTATAACATTACTC
CTTGTGGGGCTTGTTTTGCTAAACTCTTGCTTGACGCATAATTCTCTATT
GCTTGACCCATAATTAATTTTGCATATTATcgtgtttttataattttcca
aaactatatcgcgtttttttataatttcccTAAACAGTCGTGTCTTTTAT
AATTTTCACAAAACTATGGCCTTTTCTTATAGTTTCCTGAAAGGGTCGTG
TCTTTTATAATTTTCCTAAAGTTCCGCGTTTTCTTATAATTTCCCTAAAC
AGTCGTGTCTTTTATAATTTTCCAAAACTTCAGCgttttcttataatttc
ttCGAAATGGTCGtgatttttctaatttcaaaGATCGGTTGGCTTTTTTA
CCTCAGTGCCAAAGATGGAATTCTAAATGCAACGGTAAACGGGTGTTTAC
cattaataataaataataatctcAATCTTCTTATTTTAACGGTGCACGGG
GCGTTTACCGTTGCTTTTAGAATTCCCTCCTAAagaatttgagccaaaaa
attgttaaaaatagaTCAATCAGGcaatatttgtaaaaatgtaaatatac
aCAACCATTTCACCAGTAACCATgtcaacttttcaaaatcaataCTTTGT
ACGCTGGCCATGATTGGCAATTACTGCCTCAATGCGTTTGTCCATCGACA
AAATAATTTTGTCTATTTTATCTTTCGGGTAATTCAATAGGATATTTTTA
ACCCGCATCGCAAACTCCTCTTTTGTTTCACGAGTTACTTGTTTGTCAAT
AGCTTCTTTGCGAATCTCTTTCCCCACTAAATGGAAGAAGTTTTCGATCG
GGTTGAGATCTGGAGAGCGGGCAGGTATACAAAACAAGTGAGCACCAAGT
TTTTCCAAAGCACGTTTGGCACGCCTTGAATTTTGAACTGGGCATCCATC
CTGTAGAACACGTTTAGATTTGGGGTTTATTGATAGCATAAAAGCGACAG
GGAATTTCTTTCTAATCATTGTAGAAAACTTCCTACCGCAAAGGCGGTTT
TCGTATTGTTCACAGAGCACAACGCCTTGTTGAAAAGATATCGCCACCAT
GAACTTGATTTGGGTAGAGCCTTCCTTTTGGCCTTTGGCCGTACATCCAA
AAGTGAGTCCTTCGTCTCTTCTTCTCCATTCCCGTGATGTGGGAGCACGT
GCCTGGTCCAAAGGGTTCTGCTTATAAATAAAGCCTACTGCATCGAGATA
AAAGCTAATGCCTTGTTTCCAAAATTCAAGGCCAAGCCCTAACCTTTTGA
TTCGCTTTGCATAGTCGAGGCGTGATTTCAGATCTTTCTGCTTCAATATA
CCTTTACGCCGGGTGCTTCGGTATCCATAGCCAATTTTTCCTAAATGTCT
CCTGAATGTCGAGTTTGAAGCTTTTTGCTGAATTTCTGGTAGCGATAGCT
GAAGTCTCTTTGAGCTGAAGCTTCCCTCAAATGTACGTAGAATTTTGATC
TGTCGTTTAACAGCGCGGTAGTCCCTTTCATTAAGTAGAGGTGTTCGGCC
AGGGTTTTGTTTTCGTTTGTCAAAAGGTTCGTTTCCATCCAGCGGTATCT
GACTGTGACGATACATAGTTGATCTGGGAATTCCTTTGAAGCCGGGAAAC
CTGTTGCCTTCATTGCGTAGAATCTGCGGTACCTTGACTTTTCCATATTG
AACAAGGGCTCGTAGTTGGCAAGACTGTGCATAAGTCATCTTCTTTCTCT
TTCCTTTCATTGTTTTTgccattttatttttgtttatactATTTCGAAGA
ACTCGacagtctattgaataacaaattatgCTCTATTGTCTCTAGGAAAC
CAATGTCGCACTataaagttattcaaaagaccgcCAAGTTCTCCCAAACG
accatttttaatatttatatgctgaaaatataagaaaaatgaatacaaTA
AAATAACTGTCACAAATTCCTTTTCTTTCTCGAGAGAACATATTCCCGCT
AAACTTACTATGCTTGATTCTACCAGAACGCAGATCCCCCGCAGGCTTTT
ACCGGGaataaaaatactaaaattatttatttCGAACACactataaacaa
aaatataacgTTCAAATTTGTGTCGCTAAATTTAACTAAGTATAAACATT
ATGTACACTGAACACCAAGAAAAATGACATAATTTGCATAAAT Run BLAST on NCBI protein sequence of TCONS_00048723-protein >TCONS_00048723-protein ID=TCONS_00048723-protein|Name=TCONS_00048723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MAKTMKGKRKKMTYAQSCQLRALVQYGKVKVPQILRNEGNRFPGFKGIPR
STMYRHSQIPLDGNEPFDKRKQNPGRTPLLNERDYRAVKRQIKILRTFEG
SFSSKRLQLSLPEIQQKASNSTFRRHLGKIGYGYRSTRRKGILKQKDLKS
RLDYAKRIKRLGLGLEFWKQGISFYLDAVGFIYKQNPLDQARAPTSREWR
RRDEGLTFGCTAKGQKEGSTQIKFMVAISFQQGVVLCEQYENRLCGRKFS
TMIRKKFPVAFMLSINPKSKRVLQDGCPVQNSRRAKRALEKLGAHLFCIP
ARSPDLNPIENFFHLVGKEIRKEAIDKQVTRETKEEFAMRVKNILLNYPK
DKIDKIILSMDKRIEAVIANHGQRTKY Run BLAST on NCBI transcript from alignment at scaffold_145:461995..464337 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048723 ID=TCONS_00048723|Name=TCONS_00048723|organism=Clytia hemisphaerica|type=transcript|length=2343bp|location=Sequence derived from alignment at scaffold_145:461995..464337 (Clytia hemisphaerica)
ATTTATGCAAATTATGTCATTTTTCTTGGTGTTCAGTGTACATAATGTTT
ATACTTAGTTAAATTTAGCGACACAAATTTGAAcgttatatttttgttta
tagtGTGTTCGaaataaataattttagtatttttattCCCGGTAAAAGCC
TGCGGGGGATCTGCGTTCTGGTAGAATCAAGCATAGTAAGTTTAGCGGGA
ATATGTTCTCTCGAGAAAGAAAAGGAATTTGTGACAGTTATTTTAttgta
ttcatttttcttatattttcagcatataaatattaaaaatggtCGTTTGG
GAGAACTTGgcggtcttttgaataactttatAGTGCGACATTGGTTTCCT
AGAGACAATAGAGcataatttgttattcaatagactgtCGAGTTCTTCGA
AATagtataaacaaaaataaaatggcAAAAACAATGAAAGGAAAGAGAAA
GAAGATGACTTATGCACAGTCTTGCCAACTACGAGCCCTTGTTCAATATG
GAAAAGTCAAGGTACCGCAGATTCTACGCAATGAAGGCAACAGGTTTCCC
GGCTTCAAAGGAATTCCCAGATCAACTATGTATCGTCACAGTCAGATACC
GCTGGATGGAAACGAACCTTTTGACAAACGAAAACAAAACCCTGGCCGAA
CACCTCTACTTAATGAAAGGGACTACCGCGCTGTTAAACGACAGATCAAA
ATTCTACGTACATTTGAGGGAAGCTTCAGCTCAAAGAGACTTCAGCTATC
GCTACCAGAAATTCAGCAAAAAGCTTCAAACTCGACATTCAGGAGACATT
TAGGAAAAATTGGCTATGGATACCGAAGCACCCGGCGTAAAGGTATATTG
AAGCAGAAAGATCTGAAATCACGCCTCGACTATGCAAAGCGAATCAAAAG
GTTAGGGCTTGGCCTTGAATTTTGGAAACAAGGCATTAGCTTTTATCTCG
ATGCAGTAGGCTTTATTTATAAGCAGAACCCTTTGGACCAGGCACGTGCT
CCCACATCACGGGAATGGAGAAGAAGAGACGAAGGACTCACTTTTGGATG
TACGGCCAAAGGCCAAAAGGAAGGCTCTACCCAAATCAAGTTCATGGTGG
CGATATCTTTTCAACAAGGCGTTGTGCTCTGTGAACAATACGAAAACCGC
CTTTGCGGTAGGAAGTTTTCTACAATGATTAGAAAGAAATTCCCTGTCGC
TTTTATGCTATCAATAAACCCCAAATCTAAACGTGTTCTACAGGATGGAT
GCCCAGTTCAAAATTCAAGGCGTGCCAAACGTGCTTTGGAAAAACTTGGT
GCTCACTTGTTTTGTATACCTGCCCGCTCTCCAGATCTCAACCCGATCGA
AAACTTCTTCCATTTAGTGGGGAAAGAGATTCGCAAAGAAGCTATTGACA
AACAAGTAACTCGTGAAACAAAAGAGGAGTTTGCGATGCGGGTTAAAAAT
ATCCTATTGAATTACCCGAAAGATAAAATAGACAAAATTATTTTGTCGAT
GGACAAACGCATTGAGGCAGTAATTGCCAATCATGGCCAGCGTACAAAGt
attgattttgaaaagttgacATGGTTACTGGTGAAATGGTTGtgtatatt
tacatttttacaaatattgCCTGATTGAtctatttttaacaattttttgg
ctcaaattctTTAGGAGGGAATTCTAAAAGCAACGGTAAACGCCCCGTGC
ACCGTTAAAATAAGAAGATTgagattattatttattattaatgGTAAACA
CCCGTTTACCGTTGCATTTAGAATTCCATCTTTGGCACTGAGGTAAAAAA
GCCAACCGATCtttgaaattagaaaaatcaCGACCATTTCGaagaaatta
taagaaaacGCTGAAGTTTTGGAAAATTATAAAAGACACGACTGTTTAGG
GAAATTATAAGAAAACGCGGAACTTTAGGAAAATTATAAAAGACACGACC
CTTTCAGGAAACTATAAGAAAAGGCCATAGTTTTGTGAAAATTATAAAAG
ACACGACTGTTTAgggaaattataaaaaaacgcgatatagttttggaaaa
ttataaaaacacgATAATATGCAAAATTAATTATGGGTCAAGCAATAGAG
AATTATGCGTCAAGCAAGAGTTTAGCAAAACAAGCCCCACAAGGAGTAAT
GTTATAATTAGCAGCATCCCGGTCAAATACATGCTTGAAGTTTAAAATAT
TCCACCGCATGTCCATTTGGTTGGTTTCTCCCTCATCAAATTCTCCGTTA
ACAATTCGAACAATTTTCTTCTCAGCAGTTGCAAAAATGGGTTGTCTTTT
TGTCCAAAGGAGGTCCGTTGAAAATCGATTTTTAGGCCTGGNN Coding sequence (CDS) from alignment at scaffold_145:461995..464337 >TCONS_00048723 ID=TCONS_00048723|Name=TCONS_00048723|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_145:461995..464337 (Clytia hemisphaerica)
atggcAAAAACAATGAAAGGAAAGAGAAAGAAGATGACTTATGCACAGTC
TTGCCAACTACGAGCCCTTGTTCAATATGGAAAAGTCAAGGTACCGCAGA
TTCTACGCAATGAAGGCAACAGGTTTCCCGGCTTCAAAGGAATTCCCAGA
TCAACTATGTATCGTCACAGTCAGATACCGCTGGATGGAAACGAACCTTT
TGACAAACGAAAACAAAACCCTGGCCGAACACCTCTACTTAATGAAAGGG
ACTACCGCGCTGTTAAACGACAGATCAAAATTCTACGTACATTTGAGGGA
AGCTTCAGCTCAAAGAGACTTCAGCTATCGCTACCAGAAATTCAGCAAAA
AGCTTCAAACTCGACATTCAGGAGACATTTAGGAAAAATTGGCTATGGAT
ACCGAAGCACCCGGCGTAAAGGTATATTGAAGCAGAAAGATCTGAAATCA
CGCCTCGACTATGCAAAGCGAATCAAAAGGTTAGGGCTTGGCCTTGAATT
TTGGAAACAAGGCATTAGCTTTTATCTCGATGCAGTAGGCTTTATTTATA
AGCAGAACCCTTTGGACCAGGCACGTGCTCCCACATCACGGGAATGGAGA
AGAAGAGACGAAGGACTCACTTTTGGATGTACGGCCAAAGGCCAAAAGGA
AGGCTCTACCCAAATCAAGTTCATGGTGGCGATATCTTTTCAACAAGGCG
TTGTGCTCTGTGAACAATACGAAAACCGCCTTTGCGGTAGGAAGTTTTCT
ACAATGATTAGAAAGAAATTCCCTGTCGCTTTTATGCTATCAATAAACCC
CAAATCTAAACGTGTTCTACAGGATGGATGCCCAGTTCAAAATTCAAGGC
GTGCCAAACGTGCTTTGGAAAAACTTGGTGCTCACTTGTTTTGTATACCT
GCCCGCTCTCCAGATCTCAACCCGATCGAAAACTTCTTCCATTTAGTGGG
GAAAGAGATTCGCAAAGAAGCTATTGACAAACAAGTAACTCGTGAAACAA
AAGAGGAGTTTGCGATGCGGGTTAAAAATATCCTATTGAATTACCCGAAA
GATAAAATAGACAAAATTATTTTGTCGATGGACAAACGCATTGAGGCAGT
AATTGCCAATCATGGCCAGCGTACAAAGtattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048723-exon-scaffold_145-1491911889:461995..464337 | TCONS_00048723-exon-scaffold_145-1491911889:461995..464337 | Clytia hemisphaerica | exon |
| TCONS_00048723-exon-scaffold_145-1510915933:461995..464337 | TCONS_00048723-exon-scaffold_145-1510915933:461995..464337 | Clytia hemisphaerica | exon |
| TCONS_00048723-exon-scaffold_145-1575043694:461995..464337 | TCONS_00048723-exon-scaffold_145-1575043694:461995..464337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:461995..464337 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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