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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048777 ID=TCONS_00048777|Name=TCONS_00048777|organism=Clytia hemisphaerica|type=transcript|length=1020bp
AGGCTATTGGTGAAGTCTTTTGAATTAATCGGATGAGTAGTGCTCTAATA
ATAATCATAACAAATATTTTACGTGGCATGCTTCGAAAAATTCAACAGCT
TTTAGATAACCCTTCCACGAAGGGCCACAAACAGAACAGAATAGTAACTT
AACAAAATTAGAAACGAGAACAAaaaagctagatgctgaatggatcTACC
TGATGATAAAAGtaagatagcaatgcgaggagaaaaaaatcagtcagaaa
atttttggtgGACATCCtttgtactttttgaatgtGTTTGATAATGATGT
AACAATATTGGCTGGGAATCTTATGTTTTCactctttctaattcgaacta
aCGTGTTTACTGGAGATAAGAACTTGTCGTTCATTAATATTTAGCTTTTG
TTGTTTATTTAGTGCAACACAGTTGAACACGAttccgaaaatttcaaaaa
agataacgtAAAGCTTGAATCTAATTCCAGTAAGTTTCTTTTAATCCTTA
AAATCCTGTTGTCAGTAAAAACTGTTCAAATGTAGAAACCAAGACAACAG
TATCATTTGCTAAAAACATTGTGTTACTTTCTAGCTATCCTTGTTTTTAA
ATTATAGCTGTTTTTAGAAACAATTTTGTCCTACTtaattcatgattttt
gaaatagatCACATCAAAGAAGTATGTTTGTTTAACATAGTGtacaattt
gaagttttatttCCCTTGCTATGAAATGACCCTCCCCTTACTTTGATATC
ACCACCAAAACCAAACCTTATTCGCTTAAATCACTGAAACTTTTTAGAGT
GTTCGCGATACCAGAACCTTTTTCCTACCCAAGTCCTGTTCTCTTGTATT
AGAATAGGCTCCCACATTACCTCATAGCACGTATTGGTAGTAGTATTGCC
TCACTGAGACGTTTTTTAGAGAAACTGAGTTACTGAAAACGTAATGTTAG
AAGGTTGAAGCCTAAATCCAGTTgagataaaagtttttttacctacATAG
ACACTCAAAGAAACTTTTTG Run BLAST on NCBI transcript from alignment at scaffold_146:40464..41483 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048777 ID=TCONS_00048777|Name=TCONS_00048777|organism=Clytia hemisphaerica|type=transcript|length=1020bp|location=Sequence derived from alignment at scaffold_146:40464..41483 (Clytia hemisphaerica)
CAAAAAGTTTCTTTGAGTGTCTATgtaggtaaaaaaacttttatctcAAC
TGGATTTAGGCTTCAACCTTCTAACATTACGTTTTCAGTAACTCAGTTTC
TCTAAAAAACGTCTCAGTGAGGCAATACTACTACCAATACGTGCTATGAG
GTAATGTGGGAGCCTATTCTAATACAAGAGAACAGGACTTGGGTAGGAAA
AAGGTTCTGGTATCGCGAACACTCTAAAAAGTTTCAGTGATTTAAGCGAA
TAAGGTTTGGTTTTGGTGGTGATATCAAAGTAAGGGGAGGGTCATTTCAT
AGCAAGGGaaataaaacttcaaattgtaCACTATGTTAAACAAACATACT
TCTTTGATGTGatctatttcaaaaatcatgaattaAGTAGGACAAAATTG
TTTCTAAAAACAGCTATAATTTAAAAACAAGGATAGCTAGAAAGTAACAC
AATGTTTTTAGCAAATGATACTGTTGTCTTGGTTTCTACATTTGAACAGT
TTTTACTGACAACAGGATTTTAAGGATTAAAAGAAACTTACTGGAATTAG
ATTCAAGCTTTacgttatcttttttgaaattttcggaaTCGTGTTCAACT
GTGTTGCACTAAATAAACAACAAAAGCTAAATATTAATGAACGACAAGTT
CTTATCTCCAGTAAACACGttagttcgaattagaaagagtGAAAACATAA
GATTCCCAGCCAATATTGTTACATCATTATCAAACacattcaaaaagtac
aaaGGATGTCcaccaaaaattttctgactgatttttttctcctcgcattg
ctatcttaCTTTTATCATCAGGTAgatccattcagcatctagcttttTTG
TTCTCGTTTCTAATTTTGTTAAGTTACTATTCTGTTCTGTTTGTGGCCCT
TCGTGGAAGGGTTATCTAAAAGCTGTTGAATTTTTCGAAGCATGCCACGT
AAAATATTTGTTATGATTATTATTAGAGCACTACTCATCCGATTAATTCA
AAAGACTTCACCAATAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048777-exon-scaffold_146-1491911889:40464..41483 | TCONS_00048777-exon-scaffold_146-1491911889:40464..41483 | Clytia hemisphaerica | exon |
| TCONS_00048777-exon-scaffold_146-1510915933:40464..41483 | TCONS_00048777-exon-scaffold_146-1510915933:40464..41483 | Clytia hemisphaerica | exon |
| TCONS_00048777-exon-scaffold_146-1575043694:40464..41483 | TCONS_00048777-exon-scaffold_146-1575043694:40464..41483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:40464..41483 . |
Blast
The following BLAST results are available for this feature:
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