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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048742 ID=TCONS_00048742|Name=TCONS_00048742|organism=Clytia hemisphaerica|type=transcript|length=1004bp
ATGCGacaatttagtttttatgaatCACAGTAGTCTCGCGAAGTCCCTAT
TATTTCTACGACGTAAGCAAATTCACCGACTGGATAAAGGGAGCGCTCCA
AACGTCTATAAGCAATTTGTTCAATGAAACTTTGAAGTGTTAAATAGTTT
GGATAAATCAATCCCTTCTAATTTTTTAAAGTCTGTGACCACTTTGACCG
TcgatgtccgctaattagagggaAAAAAGTAGGGTTTGGccatttcatgc
aaaaagttttGTCCGCTTATtggagggtccgctaattgagtgttcgccat
ttggaaacttttttatgaggatttgactaggaaatgtccggggaaaatag
aattgtccgctaatcagaggtgtccgacttttagagtgtccgttaattgg
aGGTTTTACTGCCCCCGCCCCGAACAAGAAATGATAACAGCTTTTCCCAG
ATCTTTTCCTGCTCTTCCAAGTGATTCTATGCACACTACGGCTTTGATAA
CTATCCATCACGTTTCCACCCTGGCCTTGTGAGATAATCACCCATTAATT
CATTATAATCAATCTCCTCCATTTTTATTCGAAATCAATCTTCCAgactt
tgtttgttttgattttgcaggATGAGATTCCCACGCTACACTTTCATCTC
GAGCTCTGCGATCTATATATATACCACTGCCCTTCTCCCTCAGTCGACTa
cctcaatatttttattttaatcaacaaaaaaagaaaaaaattttaaatgt
acatagtAACTCAAgcatatatttttaaaaaagagaGAGGCCTCCGTTGT
ATTTATGGTTATACCAaattggtgataaaagagatgacaaaaaCTACTTT
GTTTACGGAATTTCTACAGGGATCAGGTCAAGTTGTTCCAATAATCAAAA
TCCAACAATTAAATCTTATGAACGTTTTATTACAGTACTaaTTGGTTCAA
AGGAAAGCTCAAAAACAAGCGAAAGCCAAAATGAGGCTATGGGTGAAGTC
TTTT Run BLAST on NCBI transcript from alignment at scaffold_146:41850..43862- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048742 ID=TCONS_00048742|Name=TCONS_00048742|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at scaffold_146:41850..43862- (Clytia hemisphaerica)
ATGCGACAATTTAGTTTTTATGAATCACAGTAGTCTCGCGAAGTCCCTAT
TATTTCTACGACGTAAGCAAATTCACCGACTGGATAAAGGGAGCGCTCCA
AACGTCTATAAGCAATTTGTTCAATGAAACTTTGAAGTGTTAAATAGTTT
GGATAAATCAATCCCTTCTAATTTTTTAAAGTCTGTGACCACTTTGACCG
TCGATGTCCGCTAATTAGAGGGAAAAAAGTAGGGTTTGGCCATTTCATGC
AAAAAGTTTTGTCCGCTTATTGGAGGGTCCGCTAATTGAGTGTTCGCCAT
TTGGAAACTTTTTTATGAGGATTTGACTAGGAAATGTCCGGGGAAAATAG
AATTGTCCGCTAATCAGAGGTGTCCGACTTTTAGAGTGTCCGTTAATTGG
AGGTTTTACTGCCCCCGCCCCGAACAAGAAATGATAACAGCTTTTCCCAG
ATCTTTTCCTGCTCTTCCAAGTGATTCTATGCACACTACGGCTTTGATAA
CTATCCATCACGTTTCCACCCTGGCCTTGTGAGATAATCACCCATTAATT
CATTATAATCAATCTCCTCCATTTTTATTCGAAATCAATCTTCCAGACTT
TGTTTGTTTTGATTTTGCAGGATGAGATTCCCACGCTACACTTTCATCTC
GAGCTCTGCGATCTATATATATACCACTGCCCTTCTCCCTCAGTCGACTA
CCTCAATATTTTTATTTTAATCAACAAAAAAAGAAAAAAATTTTAAATGT
ACATAGTAACTCAAGCATATATTTTTAAAAAAGAGAGAGGCCTCCGTTGT
ATTTATGGTTATACCAAATTGGTGATAAAAGAGATGACAAAAACTACTTT
GTTTACGGAATTTCTACAGGGATCAGGTCAAGTTGTTCCAATAATCAAAA
TCCAACAATTAAATCTTATGAACGTTTTATTACAGTACTGTAAGTTATAT
TTGAAAATATATAGATATGTTATGGTTTTTAAATGGTCATTAACAATATT
CCTATTGCCATTCAACAGCTCCTTAATTATCCCTTTGAGCATATTGGGCC
CCCCAACGAAAATCTTTATCCAAGTGAATTTAAATTTTGAAAATGTGCAC
CAAATTTGGATTGTCATCTTCCGTGAAACTTTCAGCAGTTGATGATGTCA
TCGCATCGCATCATCATTTGACACTGGGACCTCCCTCTAACTTATTTCAC
AATTTTTTTGCTAAAATTTTGTGAGGCAACTCCACGTGACCTGCCGATAC
CGTGTATTTTACAGACGGGCTTTGACCTTTTCGCCTAAACAGCCCTAGGA
TAAACTGTATCTACTCTCGGGTACCTAATAGCAGGGGGGGGTTTGGAAAA
AATCTCAAAACTTAATATGCGGGGAGGGGGTTGGAATAAAAATGTCCTGG
GTGGGAAATTTTCGAGGCTAATACAGCAGAATTAGGGCAAAAGAGGGAAC
TTTCAAAAAAAAATAAAAACAAAAAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCCCCCCCCCCCCCCCGCCGGCTAATAGGCACCCGAGAGAACTGAT
TGGAAAAATGCTATTGAGTTAATCGGATGAATAGTGCTCTAATTTAAACT
ATGATTTTTCTTTTAGAATTGGTTCAAAGGAAAGCTCAAAAACAAGCGAA
AGCCAAAATGAGGCTATGGGTAAAGTTTTTTGAGTTAATCGGACGAGTAG
TGCTCTAATTTAAACTATGATTTTTCTTTTAGAATTGGTTCAAAGGAAAG
CTCAAAAACAAGCGAAAGCCAAAATGAGGCTATGGGTGAAGTCTTTTGAG
TTAATCGGACGAGTAGTTCTCTAATTTAAACTATGATTTTTCTTTTAGAA
TTGGTTCAAAGGAAAGCTCAAAAACAAGCGAAAGCCAAAATGAGGCTATG
GGTGAAGTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048742-exon-scaffold_146-1575043694:42924..43862 | TCONS_00048742-exon-scaffold_146-1575043694:42924..43862 | Clytia hemisphaerica | exon |
| TCONS_00048742-exon-scaffold_146-1575043694:41850..41914 | TCONS_00048742-exon-scaffold_146-1575043694:41850..41914 | Clytia hemisphaerica | exon |
| TCONS_00048742-exon-scaffold_146-1510915933:42924..43862 | TCONS_00048742-exon-scaffold_146-1510915933:42924..43862 | Clytia hemisphaerica | exon |
| TCONS_00048742-exon-scaffold_146-1510915933:41850..41914 | TCONS_00048742-exon-scaffold_146-1510915933:41850..41914 | Clytia hemisphaerica | exon |
| TCONS_00048742-exon-scaffold_146-1491911889:42924..43862 | TCONS_00048742-exon-scaffold_146-1491911889:42924..43862 | Clytia hemisphaerica | exon |
| TCONS_00048742-exon-scaffold_146-1491911889:41850..41914 | TCONS_00048742-exon-scaffold_146-1491911889:41850..41914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:41850..43862 - |
Blast
The following BLAST results are available for this feature:
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