TCONS_00048795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048795
Unique NameTCONS_00048795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048795 ID=TCONS_00048795|Name=TCONS_00048795|organism=Clytia hemisphaerica|type=transcript|length=764bp
gcCTTGGTCCTTTCAGACTTTAGGTTTTTTACCAggtaacatttttattt
tgtttttctttctttacatTGACCAAGCAATTCTCGATATTCATCACGTA
ATGTTTTGCGATAAGATCTGAAGGTTCGTGTGATTCTGGATCGTtttgga
aagttgtttgtttAATATAAGACGATATAAGACCGAAGTGTGACAAAAGT
ATCATTATCATTCACTCAAACCTGGTAGCCATTTCGCTGATACAATCCAG
CTAATTTCTGTTAAAGTTTCATCTCtgagaacatgagaaatcgtTTAACA
GAATTTACTTTGCTCCCAAGATAAACAAGACCACTGGTCCCAATTAACTT
ATGATCGAAATGCCCCATTAAACTATGTTTGAGAAATTTGCTAAATTCGA
GAGCTTTTTTTCAACACACAATGTTTACCAACTAGTTCTGAAATGAATTG
AATTTAGTagaatttaattgaaaaatcATCCCCTTCTTATCACATGTCTT
ATAAGATGAATATTTACATGCCGTATGTATATATATGTTCATGCCGAATT
TTTCCCTGATACACATGTGAAAATATAGAATGTGCTACAccacaaaaagt
tgttttttggtAATTGATAATTTCCCTGGTTATTGTTGTGGTCTGGTCAA
GCATAAAAGACATATTGAGATGGTGAAAGAAATTGAACATGTTCCTGTAA
TTTTATGAAAGTGAATCGAAGCATCAACGCCAGTGATGAAAATTTGGTTC
AGCTGCAAATAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_146:122117..122880

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048795 ID=TCONS_00048795|Name=TCONS_00048795|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at scaffold_146:122117..122880 (Clytia hemisphaerica)
GGCTATTTGCAGCTGAACCAAATTTTCATCACTGGCGTTGATGCTTCGAT
TCACTTTCATAAAATTACAGGAACATGTTCAATTTCTTTCACCATCTCAA
TATGTCTTTTATGCTTGACCAGACCACAACAATAACCAGGGAAATTATCA
ATTaccaaaaaacaactttttgtggTGTAGCACATTCTATATTTTCACAT
GTGTATCAGGGAAAAATTCGGCATGAACATATATATACATACGGCATGTA
AATATTCATCTTATAAGACATGTGATAAGAAGGGGATgatttttcaatta
aattctACTAAATTCAATTCATTTCAGAACTAGTTGGTAAACATTGTGTG
TTGAAAAAAAGCTCTCGAATTTAGCAAATTTCTCAAACATAGTTTAATGG
GGCATTTCGATCATAAGTTAATTGGGACCAGTGGTCTTGTTTATCTTGGG
AGCAAAGTAAATTCTGTTAAacgatttctcatgttctcaGAGATGAAACT
TTAACAGAAATTAGCTGGATTGTATCAGCGAAATGGCTACCAGGTTTGAG
TGAATGATAATGATACTTTTGTCACACTTCGGTCTTATATCGTCTTATAT
TaaacaaacaactttccaaaACGATCCAGAATCACACGAACCTTCAGATC
TTATCGCAAAACATTACGTGATGAATATCGAGAATTGCTTGGTCAatgta
aagaaagaaaaacaaaataaaaatgttaccTGGTAAAAAACCTAAAGTCT
GAAAGGACCAAGgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031014XLOC_031014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048795-exon-scaffold_146-1491911889:122117..122880TCONS_00048795-exon-scaffold_146-1491911889:122117..122880Clytia hemisphaericaexon
TCONS_00048795-exon-scaffold_146-1510915933:122117..122880TCONS_00048795-exon-scaffold_146-1510915933:122117..122880Clytia hemisphaericaexon
TCONS_00048795-exon-scaffold_146-1575043694:122117..122880TCONS_00048795-exon-scaffold_146-1575043694:122117..122880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:122117..122880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0708104	0.517229	0.408722	0.164368	0.538579	0.316917	0.133447	0.129527	0	0.212569	0.176604	0.145192	0.428487	0.143962	0.147557	0.0679525	0.0711074	0.314407	0	0.0732938	0	1.23538	1.2863	0.0876523	0	0.0709505	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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