TCONS_00048796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048796
Unique NameTCONS_00048796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048796 ID=TCONS_00048796|Name=TCONS_00048796|organism=Clytia hemisphaerica|type=transcript|length=762bp
TCCATGTCACGACAGCCCTTCTTCTTCAAAAGCCCCGCACGAACTCAAAG
AGCAAGCAGCATGTTGACGCTCTGAATCGAAAACTAAAACTCTGGCAAAT
TGAACAATTCGAGGTCTACATCTATTTTGTCGTGCATTAGATAATGAAAC
TCATCAGGCGATTTTTGAACTATCAGATTGTGACTGAGGACAGGAGAAAT
AGAAGGGATTAAGTAGAAATGAAGCATTTTCCTACCAAGGCTTATAAAAT
TGAGGGATCTTTATTGTTTAGAGTTTTTTGATGTAAGTTATCTCGATTTT
CTTGTAATCTTTTGTACATAAggctttttaaaattgaaaatcaatgtTTG
TCGACTTTAAAGTGAAAATGCTCAAAGGCTCAAATTCAACATAAAGAAAT
ACTTTTCTTATGGTTTTATTCTTCCAGGAGAATCAAACGTTGCAATGGAG
ATCGGCGAATGACGAGCAAACAATCAACAACATGGCCACGGAGATCGAAA
GACTGCGAAAAGAATTACGGACGCAATGTGAAGTCAAAAAACCTCAGGTA
TCTtttattcattcaaaattcTCTGTCTGTCTGTCGCAACTAAAACAATT
GCTATCCCTTCTAATTGTGTCCAAACTCAATTACCATGAATAAAATTAGT
CAAGATGCAGCAATTCAGACACAGAATTTCCTTGCTATGTCGGTCAAAAA
CACAAACTATTGTTCAGTATGTCAATGGAGTTGAGACACAAACTGTCTGT
TCACATCCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_146:126725..127486

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048796 ID=TCONS_00048796|Name=TCONS_00048796|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at scaffold_146:126725..127486 (Clytia hemisphaerica)
GTTTGGATGTGAACAGACAGTTTGTGTCTCAACTCCATTGACATACTGAA
CAATAGTTTGTGTTTTTGACCGACATAGCAAGGAAATTCTGTGTCTGAAT
TGCTGCATCTTGACTAATTTTATTCATGGTAATTGAGTTTGGACACAATT
AGAAGGGATAGCAATTGTTTTAGTTGCGACAGACAGACAGAgaattttga
atgaataaaAGATACCTGAGGTTTTTTGACTTCACATTGCGTCCGTAATT
CTTTTCGCAGTCTTTCGATCTCCGTGGCCATGTTGTTGATTGTTTGCTCG
TCATTCGCCGATCTCCATTGCAACGTTTGATTCTCCTGGAAGAATAAAAC
CATAAGAAAAGTATTTCTTTATGTTGAATTTGAGCCTTTGAGCATTTTCA
CTTTAAAGTCGACAAacattgattttcaattttaaaaagccTTATGTACA
AAAGATTACAAGAAAATCGAGATAACTTACATCAAAAAACTCTAAACAAT
AAAGATCCCTCAATTTTATAAGCCTTGGTAGGAAAATGCTTCATTTCTAC
TTAATCCCTTCTATTTCTCCTGTCCTCAGTCACAATCTGATAGTTCAAAA
ATCGCCTGATGAGTTTCATTATCTAATGCACGACAAAATAGATGTAGACC
TCGAATTGTTCAATTTGCCAGAGTTTTAGTTTTCGATTCAGAGCGTCAAC
ATGCTGCTTGCTCTTTGAGTTCGTGCGGGGCTTTTGAAGAAGAAGGGCTG
TCGTGACATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031015XLOC_031015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048796-exon-scaffold_146-1491911889:126725..127486TCONS_00048796-exon-scaffold_146-1491911889:126725..127486Clytia hemisphaericaexon
TCONS_00048796-exon-scaffold_146-1510915933:126725..127486TCONS_00048796-exon-scaffold_146-1510915933:126725..127486Clytia hemisphaericaexon
TCONS_00048796-exon-scaffold_146-1575043694:126725..127486TCONS_00048796-exon-scaffold_146-1575043694:126725..127486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:126725..127486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0641551	0.0625613	0	0.142133	0.379417	0.546933	0.70714	0.926618	0.177718	0.200894	0.356028	0.256361	0.426675	0.326955	0.0728587	0.172619	0.288966	0.21507	0.0681982	0.214094	0.248115	0.0907663	0	0	1.10209	2.27454	0	0.28165	0.213621	0.169023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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