TCONS_00048732 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048732
Unique Name	TCONS_00048732
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1314

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_146:232643..241818+
coding sequence from alignment at scaffold_146:232643..241818+

transcript sequence

>TCONS_00048732 ID=TCONS_00048732|Name=TCONS_00048732|organism=Clytia hemisphaerica|type=transcript|length=1314bp
AGTcagtttttgaaacaaaatggaATGAGGGATGCTATATAGCACATGGG
CTTGGATACAAATCATTTGATCAACATTCATTGAAACAGAAAGCACTTAA
AAAGAGTGAAGTCATGGATCCCGCCCATTTTTATCAAATGACGTCAGACC
CACGTGGATTTTGCATCATCATCAATAACTCCTTCTTATCCACAGTTGAG
ACACGTGATGGAATCCTACTTAGTCAGAGAAATGGTACCGACGTTGATGG
TAAAGCTATTGAAAAGTTGTTTGGTTGGTTACAGTTTAAAgtcgaaacaa
aagaaaatgtcgGTAGATCGCAAATGCTGAAAATCTTGCGTGACTATGCC
TTAGATGACAGAAATGTAAATCATGATTGCTTGGTGATATGTATCTTATC
GCATGGTTATGAGAAAGGAATCTATTGCAATGATGGTCAAGAGATGGATT
TTGCTGAAATGAGAGAATATTTTAATGGAAAGAATTGCCCAAATTTGAAT
GGAAAACCGAAGTTATTCTACATTCAAGCTTGCCAGGGAAGTGGAAAAGC
TGAAGAATCACACATTACCGATGGTCCACCGAGTCTGTCTTTAAAATCTG
ACCCAGTTTCTCCAGGCCTTCAGGAAGGTGCAACCGTGTCTGCTAGTGAT
AAAGAACCATCACCCCCACCATCAAGCTTGGCCCACTATGCTGATTTCAG
CTTCTTTGTCGCTGCTACTCCAGGGACAGTTTCGTATCGTAATGCAAGGG
GCACGTGGTTCATCCAAGAGCTATGCAATGTGTTTACCGAAAATGCTAAA
ACCTACTCGTTGTCTATGCTTCGGCAAAAAGTTAATAGTAAAATTGCAGA
GAGATTTCAGAAGTTACCAAAGAGTAAAGGAGTTGCAAAAATGATGTCGG
ACGGTGGTTTGGATACGTTGAGAAAAGAAATTCGTTTCGGACCAAAAAAA
TCATATCAAAAATACTTGGAGGAGGATGAAATCTAGGAGACGTTTAAAAT
TAAGCTCTGGTTTAGTCGGCCCACTTTtagccctgcctattctaattgct
aGAGTTGGCATAAAGTGGATCGAAAGTCGGCTGTCTATGTTTGACTTTAG
ACGGCCAACTCTTTGCCAACTTTTGCGAAACAATATATAGCGTCATTGGT
TGGTTGATTACGTcgcaaattttaaattttgatttcaagcatTTTATTAC
TATCTTATCATTATTAAAGTACACAACTTAggttaaccctttaagtacca
atgacgagtatactagacatgcgcagtttgagttagaaatcgtcaatttt
ggtctaactcgtag

Run BLAST on NCBI

protein sequence of TCONS_00048732-protein

>TCONS_00048732-protein ID=TCONS_00048732-protein|Name=TCONS_00048732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
SVFETKWNEGCYIAHGLGYKSFDQHSLKQKALKKSEVMDPAHFYQMTSDP
RGFCIIINNSFLSTVETRDGILLSQRNGTDVDGKAIEKLFGWLQFKVETK
ENVGRSQMLKILRDYALDDRNVNHDCLVICILSHGYEKGIYCNDGQEMDF
AEMREYFNGKNCPNLNGKPKLFYIQACQGSGKAEESHITDGPPSLSLKSD
PVSPGLQEGATVSASDKEPSPPPSSLAHYADFSFFVAATPGTVSYRNARG
TWFIQELCNVFTENAKTYSLSMLRQKVNSKIAERFQKLPKSKGVAKMMSD
GGLDTLRKEIRFGPKKSYQKYLEEDEI

Run BLAST on NCBI

transcript from alignment at scaffold_146:232643..241818+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048732 ID=TCONS_00048732|Name=TCONS_00048732|organism=Clytia hemisphaerica|type=transcript|length=9176bp|location=Sequence derived from alignment at scaffold_146:232643..241818+ (Clytia hemisphaerica)
AGTcagtttttgaaacaaaatggaATGAGGGATGCTATATAGCACATGGG
CTTGGATACAAATCATTTGATCAACATTCATTGAAACAGAAAGCACTTAA
AAGTAAGTAGCTACAGAATAATActttcttaacattttattgaaaatatt
ttcagtctTCAAAGGAAAGACAATTGCTCTGCTTTGTAAAGACAAGTCTT
AGAGGCTACATAGTCCATTCATTACCTTCTGAGTAATCGTTAACAACTTT
TAATTGGAAACGTTTCCTTTCCCGACAGCAATAAAAACAGATTGCAGTAC
TAAACCATTTCTCAGATGATAGTGAATGGACTATaacctttttttataat
caTTCATCAACCATCAACTTCATCATTTTATTCTTTTGGCATTACTGATA
TTTTAGAGAGTGAAGTCATGGATCCCGCCCATTTTTATCAAATGACGTCA
GACCCACGTGGATTTTGCATCATCATCAATAACTCCTTCTTATCCACAGT
TGAGACACGTGATGGAATCCTACTTAGTCAGAGAAATGGTACCGACGTTG
ATGGTAAAGCTATTGAAAAGTTGTTTGGTTGGTTACAGTTTAAAgtcgaa
acaaaagaaaatgtcgGTAGATCGCAAATGCTGAAAATCTTGCGTGACTA
TGCCTTAGATGACAGAAATGTAAATCATGATTGCTTGGTGATATGTATCT
TATCGCATGGTTATGAGAAAGGAATCTATTGCAATGATGGTCAAGAGATG
GATTTTGCTGAAATGAGAGAATATTTTAATGGAAAGAATTGCCCAAATTT
GAATGGAAAACCGAAGTTATTCTACATTCAAGCTTGCCAGGGAAGTGGAA
AAGCTGAAGAATCACACATTACCGATGGTCCACCGAGTCTGTCTTTAAAA
TCTGACCCAGTTTCTCCAGGCCTTCAGGAAGGTGCAACCGTGTCTGCTAG
TGATAAAGAACCATCACCCCCACCATCAAGCTTGGCCCACTATGCTGATT
TCAGCTTCTTTGTCGCTGCTACTCCAGgtatatttatttaaaaaatccaa
aaattgacgaaaaattgactttcagaGGTTCCTATCCTATGGCCTTGGTT
TGGCTTCAGATGCCTGTAAATTATGAATGATCGATGCAGAATTTCATGTA
GAGtaaaaaatgcaataaataAGCAAGCAAAGGTTTCTTTATCAAAAGTT
TTGGCCATTTATAGTGTGTCCGCGAAAAAATTACCTGAAAAAGTACCTTA
TCGGTAGAAATTTCGTCggtaaaaagtgacgaaaaaatcGCTTAGTGACG
AAATTCTTTACTAACGAAAACATTTAACCGACGAAGTCTCTACCGATAAA
GTAACCGTCGTCGGTACCCAGcagcagtggcgttgtgggaaaattttctg
gaggggccaaagtcaattttttaaaaatggcgcccccccccccaaatttt
cgaaagTGGTGCCCTcacccaccagtttctaaacttttactaaatcattt
gcctaggcataatgaggaaggaaatatttaatggagaagagtagatatat
ctttgatgaatggaaaaagggaaaaacaggccccaccatggttgggaccg
gctagaaaatttttaaaaatcgactgccaagataccctaaatcactaaat
aaaaatagacaaatttgacacttgctagagtgaaaagaaacttaaagaaa
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtcatgatttcaatattgttgtcagcaaattagtcttggggcgcagtta
gattttcatttaataattatgctatattgtacaaaaaaaacttgtaaaat
acctaaattgcaaagaagttaccaattaactttattgcgagagaagcgag
cgaaaaaaatgcaagtattttaaaatgatctcagtaaaattggtcctggg
cgtAATCTAAggcttgattgattgatgatttataagattggggcgtttag
aaaatctcttttggcgccccttgctcttcggcgcccctttaaaaaagctc
cgctgggggggggggggctggcccccccctcccccccccccccccttaaa
aaggccccggggggggggggggctggcccccccctccccccccccccccc
ttaaaaaggccccggggggggggggggcatggccccccggacccccctgc
cacaacgccactgccaGCAGCGTGTTAATGTAACAGTGaaatctaatttg
ttcgaataatAGACAATGGAAATTATTTATAAGGTTGAGAAATACTCGAG
ATTTATGTTCCAGTGAGCTTTTTAGGCTTGAAGAACCTACAAAAATTATA
TTAGCCAAAAAATCTGGCTCTGACTCTTCTTGTTATacgatacacgcttt
tttataagaatagtgtactttggatgagggtcaagtattcttaagaaatc
tACAAGCTAGGCTCACAGTTGGCCTCTAACCGATCTTATTTTACACTATT
CTTGAATCGTATTTTGAGGGATGGTTTTCCCATGCATCGTTGAGGTTTTC
TTTGAAGGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAGTCAACTTGTCAGGTATTGTTGTTTTAT
CGTAGTAGTGGAGGTGTTTGTAAACCTGTACCATATCACAAAATCGTCTT
CGAAATTCGAGTGTTGGTAAGACGAGAATTTTGAGCCTATCACTATATGA
AAGGCTGCGGTACGTTGGGACCTATCTTGTTGCACGTCTTTGCACTTCCT
CGAGTAAGTTGACGTGTTTACGTAATCTTGGTGACCAAACTGATTGTGCG
TACTCAAGGTGTGGTCGGACAAATGTTGAGTATAGTGTACGGAGGATCTC
TGGAGTTAAGCTGGTGAAACCTCGTTTGATGACACCAAGCATTGAGTTgg
cttttttttacttgattggCTATATGGCCTTCAAATGTCAATTCAGCATC
AACCAATATACCCAGGTCTTTTTGTTTAAATACGTGCTCAAGCTGAATAT
CACCAAGACGATACGGATGAGCGTGTTTTATATTTACGAATTTGCCGATT
GTAAGAACGTGACATTTATCCGGATGGAACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTCCATC
AGCTTGCAAACCACGGATGTTAAACTCACTGGTCTGTAATTGATGGCCAA
GTTATGCGCGCCTTTGTTCTTGAAGATGGGCGTGACGTGAGCAACCCTCC
AATCCTCAGGTAGTACCCCTTCAACCAGTGTCTTATTCATAAGCCTTGAA
AGGGGCTCGGAAATTTGGTCGACAAGTTCTTTCAACATTCTTGGATGTAT
TTCATCAGGACCAAAAGATTTGTTTGTATCCAGATCTTTGATCTTCTTAC
TTATCATATCTTTAGTTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
CGatccgctcaaggccgcgcaactttggtaggatttgttgacttcaaatc
ctaccaaggagattgacttctagcctttcgggcttatacttcattggatg
TAACATAGGTAAGCCGATAGCGACTCTTTTCCTCTGGACACGAGGCTCGG
GCCCATTTCCTGTGCAATCGATTTTTTTCGCTTACTTCTCTTTGAAGATC
ATTTCCTATTGGTATAGACCCCTTGCTCCTCCAGCTCTGACAATCAAATT
CTTTCAATGGAAGATTTCTAAGCTGtaataatttgtttttaaatgattGC
CAAATTTCCTCTACAGATTTAATGTCCATTGCATTGAGTAATCCCTCTTG
CCATTGATGTGCTACAAGAGACTGTTTCATTGCAGCATAATTACCATCGT
TGAAGACGTATCGCTTTGAGTTAACTTTGCGCTCAGTGTAGCAAGCAAAG
GTGAAAGCCAAAACACTATGATCGCTCTTCCCTAGTGGGCTTAGATATTG
TAAGtcacatacacgctttttcttttataagaataacttttataagaata
tcagggtgagatttcgggtttaaaacaataggcctattgtttagagcaat
agaaaaataagaataatgctcaccctcaaccaaagtacactattcttata
aaaaaaagcgtgtatttgatTCTCCTCGCCCGTGAAGATTAAATCAATCG
TAGATGGGTCATCAGTTCCTCGACAACGTGTTGGCTCATTCACGTGTTGA
TGTAGAAAGGAGTCACGGATTGCATCTAGAAAATGCTCTACCTTACTCTG
CTCGATGTGCGGCGTGGTCCAATTTTCCCAGTTAATTTTTTAGACTTcac
tttttttacaaatatgagaaatgatcaatttgagagtttcgATCTTTTca
gtgaacatttgggttaaaattacatttcttcctcaaagcttcaatttatc
ttaTCTCTAACAAAAGGAAGCATTTTTTCTgctaaccaaatacaaaatga
ctgtattcttatcaaattctgtgaaattcaccttagagggtattcttatg
ttcttacgatttggccaattttcaccctgatattcttatagaagatattc
ttatgaaaaaaaagcgtgtaccgtTGGTGAGAGAGCCAAACCACACCTGA
CACGCCTTCTCATAAGGTTATGAAGTGtcataattataaactttttgtcg
aaaaaatgtttgtcttttcaactaAAACATCCagggtgtttttccactga
cGGCTTAAGCTAACTGGATTAATGTAACTTTTTCATAAAAGGATAAATAG
CCCAAGCTATTCATATAATCTTTGGATTAAAAGAGATGGTTGTAcgataa
ttttttcttttcagaaaaatattgtattTCTCAAAGGAACACAGGAGAAA
GATTTTCACGCATTTTCTAATCCACTAATACATGGTCGAGGGCATTTACG
AGAGAACAAAAGAGCGAGGATAGGCGGATCAGAAAATACAAAGGTTTGCT
GTGggaaatgaaattattttttacaaaagaaaacataaacgtgtaaccat
ctcttttcatccaCGACttatggtcgtgttcagacatgaaagtttaagtt
taaggcttaagtagtactaagttgatatgagaattaagaaatgcaacgac
ttaattgctatttcatcttttagatagattacataagagaggaaaaagga
atcccattttgaatgtttgagtgagcaaagatttattatacactggacaa
acgactcataaaacgatggagagcgatcattgtattttcattgtttctga
aaacaattgatgttctagctttgaccgcaaaggacaactgccatggcggc
tcgaagatgtctgatttttaaaaatgtttatcagtcttattttaaaaagt
tctctagctctttctttttgtacatttgcNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgaaattttcaattggaaatatctttccaa
gactgtccccagaagagctgaaattaacatacataagacttgagtgtctt
ggctccactgtggtatgaaagtCCTTTGGAAATTtattatacacaacacg
tcttttgcatctttctcacagcttgaaacgtcataacgacttataattag
caattaagtggaagaatctgactctcataGGACAGTTtgaagtctctttt
gggaattggacgagtgattttcgataagaaatgtaataaaaatccttcga
aaaatcatataatgagggaaggagagtgaacaataatatcattactgcgg
acatagctagtacacgagaaatcggcaaaaatctgttacttgtatatcca
gtgtataataaatccttggagTGAGGCTtcgtttttgcgttttttatAGA
GGAGATCGCAAACAGTTGATAGTATATACACAACATCTTAAAACTGCAGA
ATGGTTGCTAGAATTGAAACATTAGCATTGCTTCTAGAGACTTATAGGAA
GAAAAAATTGCTCAGAAAGAAATACGCTATTCAGAAAAGgaatttcatgt
ttttgttgCGGAGTAtgaagtcataaatttcactttctcctttcataatt
tacaaaaggagcatgcttttcacttgcgaattctgatttcgtctattcag
aaaactgtgatAATAtcgcaaaaactttttttttaaaccagagggtgatt
cctttttaaactttggtttaacttatGAGGAGCGTGCagctaaatacaaa
aggaatataaaagaaacatgtagagttaattactttaaaccttggtctga
acacgacctataTGAATAGTTTTGGGCTATTCAGCGTTTTATTACACGTT
CTGTTAATCCTATTAGCTTAAGTCGCCAGTGGAAAAACACCCCCATTGTC
TTTAGACGTGATAAAGAAAAATATCGGGTTCAGCAAACGGCTTTTTGTCT
CCAGGTTTAAAACTATATCCATGAGTCGAACGCTTCAATAACCCTAATAT
TTAGTTTAATGTGTATATCGTTTGATCTTTTCCAGGGACAGTTTCGTATC
GTAATGCAAGGGGCACGTGGTTCATCCAAGAGCTATGCAATGTGTTTACC
GAAAATGCTAAAACCTACTCGTTGTCTATGCTTCGGCAAAAAGTTAATAG
TAAAATTGCAGAGAGATTTCAGAAGTTACCAAAGAGTAAAGGAGTTGCAA
AAATGATGTCGGACGGTGGTTTGGATACGTTGAGAAAAGAAATTCGTTTC
GGACCAAAAAAATCATATCAAAAATACTTGGAGGAGGATGAAATCTAGGA
GACGTTTAAAATTAAGCTCTGGTTTAGTCGGCCCACTTTtagccctgcct
attctaattgctaGAGTTGGCATAAAGTGGATCGAAAGTCGGCTGTCTAT
GTTTGACTTTAGACGGCCAACTCTTTGCCAACTTTTGCGAAACAATATAT
AGCGTCATTGGTTGGTTGATTACGTcgcaaattttaaattttgatttcaa
gcatTTTATTACTATCTTATCATTATTAAAGTACACAACTTAggttaacc
ctttaagtaccaatgacgagtatactagacatgcgcagtttgagttagaa
atcgtcaattttggtctaactcgtag

Coding sequence (CDS) from alignment at scaffold_146:232643..241818+

>TCONS_00048732 ID=TCONS_00048732|Name=TCONS_00048732|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_146:232643..241818+ (Clytia hemisphaerica)
TcagtttttgaaacaaaatggaATGAGGGATGCTATATAGCACATGGGCT
TGGATACAAATCATTTGATCAACATTCATTGAAACAGAAAGCACTTAAAA
AGAGTGAAGTCATGGATCCCGCCCATTTTTATCAAATGACGTCAGACCCA
CGTGGATTTTGCATCATCATCAATAACTCCTTCTTATCCACAGTTGAGAC
ACGTGATGGAATCCTACTTAGTCAGAGAAATGGTACCGACGTTGATGGTA
AAGCTATTGAAAAGTTGTTTGGTTGGTTACAGTTTAAAgtcgaaacaaaa
gaaaatgtcgGTAGATCGCAAATGCTGAAAATCTTGCGTGACTATGCCTT
AGATGACAGAAATGTAAATCATGATTGCTTGGTGATATGTATCTTATCGC
ATGGTTATGAGAAAGGAATCTATTGCAATGATGGTCAAGAGATGGATTTT
GCTGAAATGAGAGAATATTTTAATGGAAAGAATTGCCCAAATTTGAATGG
AAAACCGAAGTTATTCTACATTCAAGCTTGCCAGGGAAGTGGAAAAGCTG
AAGAATCACACATTACCGATGGTCCACCGAGTCTGTCTTTAAAATCTGAC
CCAGTTTCTCCAGGCCTTCAGGAAGGTGCAACCGTGTCTGCTAGTGATAA
AGAACCATCACCCCCACCATCAAGCTTGGCCCACTATGCTGATTTCAGCT
TCTTTGTCGCTGCTACTCCAGGGACAGTTTCGTATCGTAATGCAAGGGGC
ACGTGGTTCATCCAAGAGCTATGCAATGTGTTTACCGAAAATGCTAAAAC
CTACTCGTTGTCTATGCTTCGGCAAAAAGTTAATAGTAAAATTGCAGAGA
GATTTCAGAAGTTACCAAAGAGTAAAGGAGTTGCAAAAATGATGTCGGAC
GGTGGTTTGGATACGTTGAGAAAAGAAATTCGTTTCGGACCAAAAAAATC
ATATCAAAAATACTTGGAGGAGGATGAAATCTAGTcagtttttgaaacaa
aatggaATGAGGGATGCTATATAGCACATGGGCTTGGATACAAATCATTT
GATCAACATTCATTGAAACAGAAAGCACTTAAAAAGAGTGAAGTCATGGA
TCCCGCCCATTTTTATCAAATGACGTCAGACCCACGTGGATTTTGCATCA
TCATCAATAACTCCTTCTTATCCACAGTTGAGACACGTGATGGAATCCTA
CTTAGTCAGAGAAATGGTACCGACGTTGATGGTAAAGCTATTGAAAAGTT
GTTTGGTTGGTTACAGTTTAAAgtcgaaacaaaagaaaatgtcgGTAGAT
CGCAAATGCTGAAAATCTTGCGTGACTATGCCTTAGATGACAGAAATGTA
AATCATGATTGCTTGGTGATATGTATCTTATCGCATGGTTATGAGAAAGG
AATCTATTGCAATGATGGTCAAGAGATGGATTTTGCTGAAATGAGAGAAT
ATTTTAATGGAAAGAATTGCCCAAATTTGAATGGAAAACCGAAGTTATTC
TACATTCAAGCTTGCCAGGGAAGTGGAAAAGCTGAAGAATCACACATTAC
CGATGGTCCACCGAGTCTGTCTTTAAAATCTGACCCAGTTTCTCCAGGCC
TTCAGGAAGGTGCAACCGTGTCTGCTAGTGATAAAGAACCATCACCCCCA
CCATCAAGCTTGGCCCACTATGCTGATTTCAGCTTCTTTGTCGCTGCTAC
TCCAGGGACAGTTTCGTATCGTAATGCAAGGGGCACGTGGTTCATCCAAG
AGCTATGCAATGTGTTTACCGAAAATGCTAAAACCTACTCGTTGTCTATG
CTTCGGCAAAAAGTTAATAGTAAAATTGCAGAGAGATTTCAGAAGTTACC
AAAGAGTAAAGGAGTTGCAAAAATGATGTCGGACGGTGGTTTGGATACGT
TGAGAAAAGAAATTCGTTTCGGACCAAAAAAATCATATCAAAAATACTTG
GAGGAGGATGAAATCTAGTcagtttttgaaacaaaatggaATGAGGGATG
CTATATAGCACATGGGCTTGGATACAAATCATTTGATCAACATTCATTGA
AACAGAAAGCACTTAAAAAGAGTGAAGTCATGGATCCCGCCCATTTTTAT
CAAATGACGTCAGACCCACGTGGATTTTGCATCATCATCAATAACTCCTT
CTTATCCACAGTTGAGACACGTGATGGAATCCTACTTAGTCAGAGAAATG
GTACCGACGTTGATGGTAAAGCTATTGAAAAGTTGTTTGGTTGGTTACAG
TTTAAAgtcgaaacaaaagaaaatgtcgGTAGATCGCAAATGCTGAAAAT
CTTGCGTGACTATGCCTTAGATGACAGAAATGTAAATCATGATTGCTTGG
TGATATGTATCTTATCGCATGGTTATGAGAAAGGAATCTATTGCAATGAT
GGTCAAGAGATGGATTTTGCTGAAATGAGAGAATATTTTAATGGAAAGAA
TTGCCCAAATTTGAATGGAAAACCGAAGTTATTCTACATTCAAGCTTGCC
AGGGAAGTGGAAAAGCTGAAGAATCACACATTACCGATGGTCCACCGAGT
CTGTCTTTAAAATCTGACCCAGTTTCTCCAGGCCTTCAGGAAGGTGCAAC
CGTGTCTGCTAGTGATAAAGAACCATCACCCCCACCATCAAGCTTGGCCC
ACTATGCTGATTTCAGCTTCTTTGTCGCTGCTACTCCAGGGACAGTTTCG
TATCGTAATGCAAGGGGCACGTGGTTCATCCAAGAGCTATGCAATGTGTT
TACCGAAAATGCTAAAACCTACTCGTTGTCTATGCTTCGGCAAAAAGTTA
ATAGTAAAATTGCAGAGAGATTTCAGAAGTTACCAAAGAGTAAAGGAGTT
GCAAAAATGATGTCGGACGGTGGTTTGGATACGTTGAGAAAAGAAATTCG
TTTCGGACCAAAAAAATCATATCAAAAATACTTGGAGGAGGATGAAATCT
AG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030973	XLOC_030973	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00048732-protein	TCONS_00048732-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00048732-exon-scaffold_146-1491911889:232643..232744	TCONS_00048732-exon-scaffold_146-1491911889:232643..232744	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1510915933:232643..232744	TCONS_00048732-exon-scaffold_146-1510915933:232643..232744	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1575043694:232643..232744	TCONS_00048732-exon-scaffold_146-1575043694:232643..232744	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1491911889:233049..233669	TCONS_00048732-exon-scaffold_146-1491911889:233049..233669	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1510915933:233049..233669	TCONS_00048732-exon-scaffold_146-1510915933:233049..233669	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1575043694:233049..233669	TCONS_00048732-exon-scaffold_146-1575043694:233049..233669	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1491911889:241228..241818	TCONS_00048732-exon-scaffold_146-1491911889:241228..241818	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1510915933:241228..241818	TCONS_00048732-exon-scaffold_146-1510915933:241228..241818	Clytia hemisphaerica	exon
TCONS_00048732-exon-scaffold_146-1575043694:241228..241818	TCONS_00048732-exon-scaffold_146-1575043694:241228..241818	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_146	supercontig	scaffold_146:232643..241818 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15069	1.18315	0.964714	1.576	0.69276	0.688331	0.743794	0.77288	0.595223	0.469434	0.553822	0.765218	5.2466	5.14895	1.89059	1.73581	0.309081	0.716417	4.71258	5.73026	1.08027	1.07556	0.765476	1.43838	1.71333	1.35061	0.342183	0.610793	0.816953	0.436345

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR015917	Pept_C14A
IPR002138	Pept_C14_p10
IPR001309	Pept_C14_p20
IPR029030	Caspase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity
GO:0004197	cysteine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004197	cysteine-type endopeptidase activity
molecular_function	GO:0008234	cysteine-type peptidase activity

Blast

[Close]

BLAST of TCONS_00048732 vs. Swiss-Prot (Human)
Match: CASP8 (Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.241e-36
Identity = 97/283 (34.28%), Postives = 138/283 (48.76%), Query Frame = 3

Query:  102 KSEVMDPAHFYQMTSDPRGFCIIINNSFLSTVETRDGIL--LSQRNGTDVDGKAIEKLFGWLQFKVETKENVGRSQMLKILRDYALDDRNVNHDCLVICILSHGYEKGIYCNDGQEMDFAEMREYFNGKNCPNLNGKPKLFYIQACQGSGKAEESHITDGPPSLSLKSDPVSPGLQEGATVSASDKEPSPPPSSLAHYADFSFFVAATPGTVSYRN-ARGTWFIQELCNVFTENA-KTYSLSMLRQKVNSKIAERFQKLPKSKGVAKMMSDGGLDTLRKEIRF 938
            +S+ +D    YQM S PRG+C+IINN   +    +   L  +  RNGT +D  A+   F  L F+++  ++    Q+ +IL+ Y L D + N DC + CILSHG +  IY  DGQE    E+   F G  CP+L GKPK+F+IQACQG                  K  PV    +E   +       SP    +   ADF   +A     VSYRN A GTW+IQ LC    E   +   +  +  +VN +++ +  K    K + K M      TLRK++ F
Sbjct:  218 ESQTLDKV--YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS-NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQ--------------KGIPVETDSEEQPYLEMD--LSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDK----KNMGKQMPQPTF-TLRKKLVF 476

The following BLAST results are available for this feature:

BLAST of TCONS_00048732 vs. Swiss-Prot (Human)

BLAST of TCONS_00048732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CASP8	1.241e-36	34.28	Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1	[more]

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TCONS_00048732 (transcript) - C. hemisphaerica