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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048739 ID=TCONS_00048739|Name=TCONS_00048739|organism=Clytia hemisphaerica|type=transcript|length=1937bp
AATTGCAAAGAGCATCACAAACTGCCACATGAGTGGACAGATGAATGTAA
AGATTGTAATACCTGTGTTAAGTTTGAGATGTTGGAAAGATAACCTTTGG
ATGTTCTGCCAAATGCCAAGAAAGCGTTGGAATATCTATTCACCACTAAG
ATGGTCAATACAGAAAAGAATGAGAACTTTGAAAAAACTGTTGCAAAGGG
TTGTATTGCAATGGattttttgcaatgtttatccaaAGAACTATTCAACA
TTGGAGCACGATATTAAAGTATTATCAAATAATtatgaattattgaaaaa
agaagcaCTTCGAAGAAACCAGATGATTACTGGCCTAAGTTTGAGAAATA
CAGGTTAAAGAATTGTTTGACATTATTGGTAAGATTTCTCTTTGATTATT
GTATAGTCCATTACAGTACCAGGGCAAATTCTATCCTAGGATTAACAGTT
ATATCCAATTCaattctttgcaatttttgtttagGTATACAAGTTGAGTT
CAATCCATAGACCATGATGACACCTTTAAAGTTTacatttcatttgaaaa
ggCATTGTAGGGTACAGTCATTAATAAAATTGGTGTTAAATTTAAAGGTT
CAAAAGAAAGGGTAAGGCTACAAGAAACAACCTGGGTgtaaaaataaggc
aaaatgactgGACATTTTATAATAACCAAAAACAAATCCCACTTGAAGGG
TTTTGTACCAGTTTCACTGATAGActcttttttaaactttccaaTTCACT
GAGGATGCTCTTAAGATCTGCCATTGAGATAATGGTAGCTGATCTGGTGc
cttcaaatatatttttaaccCATTTTGATAACCCCCCCTTGAACTCAACC
TCTTGCCATTCTGCCTCCTCATTCTGCATCCTGCAAATGTAAACTTTAAA
GGTGCCATAATCATTGTCTATGGATTAAACTCAACTTGTATACCTAAACA
AATATTGCAAAGAATTGAATTGGATATCACTGTCAGTCCTAGGAGATAAT
TTGCCTTTGCAATGGACTATTCAATAATCAAAGAGAAATCTTACCAATGT
TAAACAATTCTTTAACCTATCTGTATTTCTCAAACTTAGGccagtactct
cgggtacctaatagccgggggtttggaataagtgGGGGGTATAGTGCAGA
AAGGGGTCTGAttcccttcttggcatccccccaacctttaaaaatgccta
tccccaagggttttgggctaaattttcgaaaatatatagTGTATAGTGCG
ATCCGATAATCCCCTCAGACTACTCAAACAgaaaaacttcctttcatgca
gaccaaatttcataacaacgCTGGAAAAAATATCTACAATATACGTAAGC
CCCCCCTTCTTAACCGATCCCtcctccttgctatccccccccctttttaa
tgaaaatttcttatccccccttcttcacttttttggaaggtatCATctcc
ccttaagaaagggggGGGGGTCCGAActatgggggggggggtggaataaa
aatatcctgggtggaaaattttcagaaaggaggctaatacagcagaatta
gggcaaaagagggaactttcaaaagaattttcccAAGAATCAAtaagggg
ggttggaataagaatgtcctgggtggaaagtttttgaaaaatttattagt
GGGCccctggctattaggtaccctaGAGTAATCATCTGGTTTCTTCGAag
tgcttcttttttttaatgattcataATTTTATgtattatttttaattatt
tataaaattgtaatAATAATCTTTTAAAATCGTGCTCCACTGTTCAATAG
TTCTttggataaacattgcaaaaaatCCATTGCAATACAACTGTTTGCaa
cagtttttcaaaattcttattcTTTCCTGTATTGACCATCTCAGTGGTGA
ATAGATATTCCAACGCTTTCTTGGCATTTGGTAGAAC Run BLAST on NCBI transcript from alignment at scaffold_146:455138..457229+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048739 ID=TCONS_00048739|Name=TCONS_00048739|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at scaffold_146:455138..457229+ (Clytia hemisphaerica)
AATTGCAAAGAGCATCACAAACTGCCACATGAGTGGACAGATGAATGTAA
AGATTGTAATACCTGTGTTAAGTTTGAGATGTTGGAAAGATAACCTTTGG
ATGTTCTGCCAAATGCCAAGAAAGCGTTGGAATATCTATTCACCACTAAG
ATGGTCAATACAGAAAAGAATGAGAACTTTGAAAAAACTGTTGCAAAGGG
TTGTATTGCAATGGattttttgcaatgtttatccaaAGAACTATTCAACA
TTGGAGCACGATATTAAAGTATTATCAAATAATtatgaattattgaaaaa
agaagcaCTTCGAAGAAACCAGATGATTACTGGCCTAAGTTTGAGAAATA
CAGGTTAAAGAATTGTTTGACATTATTGGTAAGATTTCTCTTTGATTATT
GTATAGTCCATTACAGTACCAGGGCAAATTCTATCCTAGGATTAACAGTT
ATATCCAATTCaattctttgcaatttttgtttagGTATACAAGTTGAGTT
CAATCCATAGACCATGATGACACCTTTAAAGTTTacatttcatttgaaaa
ggCATTGTAGGGTACAGTCATTAATAAAATTGGTGTTAAATTTAAAGGTT
CAAAAGAAAGGGTAAGGCTACAAGAAACAACCTGGGTgtaaaaataaggc
aaaatgactgGACATTTTATAATAACCAAAAACAAATCCCACTTGAAGGG
TTTTGTACCAGTTTCACTGATAGActcttttttaaactttccaaTTCACT
GAGGATGCTCTTAAGATCTGCCATTGAGATAATGGTAGCTGATCTGGTGc
cttcaaatatatttttaaccCATTTTGATAACCCCCCCTTGAACTCAACC
TCTTGCCATTCTGCCTCCTCATTCTGCATCCTGCAAATGTAAACTTTAAA
GGTGCCATAATCATTGTCTATGGATTAAACTCAACTTGTATACCTAAACA
AATATTGCAAAGAATTGAATTGGATATCACTGTCAGTCCTAGGAGATAAT
TTGCCTTTGCAATGGACTATTCAATAATCAAAGAGAAATCTTACCAATGT
TAAACAATTCTTTAACCTATCTGTATTTCTCAAACTTAGGccagtactct
cgggtacctaatagccgggggtttggaataagtgGGGGGTATAGTGCAGA
AAGGGGTCTGAttcccttcttggcatccccccaacctttaaaaatgccta
tccccaagggttttgggctaaattttcgaaaatatatagTGTATAGTGCG
ATCCGATAATCCCCTCAGACTACTCAAACAgaaaaacttcctttcatgca
gaccaaatttcataacaacgCTGGAAAAAATATCTACAATATACGTAAGC
CCCCCCTTCTTAACCGATCCCtcctccttgctatccccccccctttttaa
tgaaaatttcttatccccccttcttcacttttttggaaggtatCATctcc
ccttaagaaaggggggtccgaactatggggggggggttggaataaaaata
tcctgggtggaaaattttcagaaaggaggctaatacagcagaattagggc
aaaagagggaactttcaaaagaattttcccaaaaatcaataagggGGGTT
GGAAGAAGAATGTCCTGGNGGGGGGTCCGAActatgggggggggggtgga
ataaaaatatcctgggtggaaaattttcagaaaggaggctaatacagcag
aattagggcaaaagagggaactttcaaaagaattttcccAAGAATCAAta
aggggggttggaataagaatgtcctgggtggaaagtttttgaaaaattta
ttagtGGGCccctggctattaggtaccctaGAGTAATCATCTGGTTTCTT
CGAagtgcttcttttttttaatgattcataATTTTATgtattatttttaa
ttatttataaaattgtaatAATAATCTTTTAAAATCGTGCTCCACTGTTC
AATAGTTCTttggataaacattgcaaaaaatCCATTGCAATACAACTGTT
TGCaacagtttttcaaaattcttattcTTTCCTGTATTGACCATCTCAGT
GGTGAATAGATATTCCAACGCTTTCTTGGCATTTGGTAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048739-exon-scaffold_146-1491911889:455138..456602 | TCONS_00048739-exon-scaffold_146-1491911889:455138..456602 | Clytia hemisphaerica | exon |
| TCONS_00048739-exon-scaffold_146-1510915933:455138..456602 | TCONS_00048739-exon-scaffold_146-1510915933:455138..456602 | Clytia hemisphaerica | exon |
| TCONS_00048739-exon-scaffold_146-1575043694:455138..456602 | TCONS_00048739-exon-scaffold_146-1575043694:455138..456602 | Clytia hemisphaerica | exon |
| TCONS_00048739-exon-scaffold_146-1491911889:456758..457229 | TCONS_00048739-exon-scaffold_146-1491911889:456758..457229 | Clytia hemisphaerica | exon |
| TCONS_00048739-exon-scaffold_146-1510915933:456758..457229 | TCONS_00048739-exon-scaffold_146-1510915933:456758..457229 | Clytia hemisphaerica | exon |
| TCONS_00048739-exon-scaffold_146-1575043694:456758..457229 | TCONS_00048739-exon-scaffold_146-1575043694:456758..457229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:455138..457229 + |
Blast
The following BLAST results are available for this feature:
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