|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048774 ID=TCONS_00048774|Name=TCONS_00048774|organism=Clytia hemisphaerica|type=transcript|length=1994bp
GTTCTACCAAATGCCAAGAAAGCGTTGGAATATCTATTCACCACTGAGAT
GGTCAATACAGGAAAgaataagaattttgaaaaactgttGCAAACAGTTG
TATTGCAATGGattttttgcaatgtttatccaaAGAACTATTGAACAGTG
GAGCACGATTTTAAAAGATTATTattacaattttataaataattaaaaat
aatacATAAAATtatgaatcattaaaaaaaagaagcactTCGAAGAAACC
AGATGATTACTCtagggtacctaatagccagggGCCCactaataaatttt
tcaaaaactttccacccaggacattcttattccaaccccccttaTTGATT
CTTgggaaaattcttttgaaagttccctcttttgccctaattctgctgta
ttagcctcctttctgaaaattttccacccaggatatttttattccacccc
cccccccatagTTCGGACCCCCCNCCAGGACATTCTTCTTCCAACCCccc
ttattgatttttgggaaaattcttttgaaagttccctcttttgccctaat
tctgctgtattagcctcctttctgaaaattttccacccaggatattttta
ttccaaccccccccccatagttcggacccccctttcttaaggggagATGa
taccttccaaaaaagtgaagaaggggggataagaaattttcattaaaaag
ggggggggatagcaaggaggaGGGATCGGTTAAGAAGGGGGGGCTTACGT
ATATTGTAGATATTTTTTCCAGcgttgttatgaaatttggtctgcatgaa
aggaagtttttcTGTTTGAGTAGTCTGAGGGGATTATCGGATCGCACTAT
ACActatatattttcgaaaatttagcccaaaacccttggggataggcatt
tttaaaggttggggggatgccaagaagggaaTCAGACCCCTTTCTGCACT
ATACCCCCcacttattccaaacccccggctattaggtacccgagagtact
ggCCTAAGTTTGAGAAATACAGATAGGTTAAAGAATTGTTTAACATTGGT
AAGATTTCTCTTTGATTATTGAATAGTCCAATGATTATGGCACCTTTAAA
GTTTACATTTGCAGGATGCAGAATGAGGAGGCAGAATGGCAAGAGGTTGA
GTTCAAGGGGGGGTTATCAAAATGggttaaaaatatatttgaaggCACCA
GATCAGCTACCATTATCTCAATGGCAGATCTTAAGAGCATCCTCAGTGAA
ttggaaagtttaaaaaagagTCTATCAGTGAAACTGGTACAAAACCCTTC
AAGTGGGATTTGTTTTTGGTTATTATAAAATGTCcagtcattttgcctta
tttttacACCCAGGTTGTTTCTTGTAGCCTTACCCTTTCTTTTGAACCTT
TAAATTTAACACCAATTTTATTAATGACTGTACCCTACAATGccttttca
aatgaaatgtAAACTTTAAAGGTGTCATCATGGTCTATGGATTGAACTCA
ACTTGTATACctaaacaaaaattgcaaagaattGAATTGGATATAACTGT
TAATCCTAGGATAGAATTTGCCCTGGTACTGTAATGGACTATACAATAAT
CAAAGAGAAATCTTACCAATAATGTCAAACAATTCTTTAACCTGTATTTC
TCAAACTTAGGCCAGTAATCATCTGGTTTCTTCGAAGtgcttcttttttc
aataattcataATTATTTGATAATACTTTAATATCGTGCTCCAATGTTGA
ATAGTTCTttggataaacattgcaaaaaatCCATTGCAATACAACCCTTT
GCAACAGTTTTTTCAAAGTTCTCATTCTTTTCTGTATTGACCATCTTAGT
GGTGAATAGATATTCCAACGCTTTCTTGGCATTTGGCAGAACATCCAAAG
GTTATCTTTCCAACATCTCAAACTTAACACAGGTATTACAATCTTTACAT
TCATCTGTCCACTCATGTGGCAGTTTGTGATGCTCTTTGCAATT Run BLAST on NCBI transcript from alignment at scaffold_146:455138..457229- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048774 ID=TCONS_00048774|Name=TCONS_00048774|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at scaffold_146:455138..457229- (Clytia hemisphaerica)
GTTCTACCAAATGCCAAGAAAGCGTTGGAATATCTATTCACCACTGAGAT
GGTCAATACAGGAAAGAATAAGAATTTTGAAAAACTGTTGCAAACAGTTG
TATTGCAATGGATTTTTTGCAATGTTTATCCAAAGAACTATTGAACAGTG
GAGCACGATTTTAAAAGATTATTATTACAATTTTATAAATAATTAAAAAT
AATACATAAAATTATGAATCATTAAAAAAAAGAAGCACTTCGAAGAAACC
AGATGATTACTCTAGGGTACCTAATAGCCAGGGGCCCACTAATAAATTTT
TCAAAAACTTTCCACCCAGGACATTCTTATTCCAACCCCCCTTATTGATT
CTTGGGAAAATTCTTTTGAAAGTTCCCTCTTTTGCCCTAATTCTGCTGTA
TTAGCCTCCTTTCTGAAAATTTTCCACCCAGGATATTTTTATTCCACCCC
CCCCCCCATAGTTCGGACCCCCCNCCAGGACATTCTTCTTCCAACCCCCC
TTATTGATTTTTGGGAAAATTCTTTTGAAAGTTCCCTCTTTTGCCCTAAT
TCTGCTGTATTAGCCTCCTTTCTGAAAATTTTCCACCCAGGATATTTTTA
TTCCAACCCCCCCCCCATAGTTCGGACCCCCCTTTCTTAAGGGGAGATGA
TACCTTCCAAAAAAGTGAAGAAGGGGGGATAAGAAATTTTCATTAAAAAG
GGGGGGGGATAGCAAGGAGGAGGGATCGGTTAAGAAGGGGGGGCTTACGT
ATATTGTAGATATTTTTTCCAGCGTTGTTATGAAATTTGGTCTGCATGAA
AGGAAGTTTTTCTGTTTGAGTAGTCTGAGGGGATTATCGGATCGCACTAT
ACACTATATATTTTCGAAAATTTAGCCCAAAACCCTTGGGGATAGGCATT
TTTAAAGGTTGGGGGGATGCCAAGAAGGGAATCAGACCCCTTTCTGCACT
ATACCCCCCACTTATTCCAAACCCCCGGCTATTAGGTACCCGAGAGTACT
GGCCTAAGTTTGAGAAATACAGATAGGTTAAAGAATTGTTTAACATTGGT
AAGATTTCTCTTTGATTATTGAATAGTCCATTGCAAAGGCAAATTATCTC
CTAGGACTGACAGTGATATCCAATTCAATTCTTTGCAATATTTGTTTAGG
TATACAAGTTGAGTTTAATCCATAGACAATGATTATGGCACCTTTAAAGT
TTACATTTGCAGGATGCAGAATGAGGAGGCAGAATGGCAAGAGGTTGAGT
TCAAGGGGGGGTTATCAAAATGGGTTAAAAATATATTTGAAGGCACCAGA
TCAGCTACCATTATCTCAATGGCAGATCTTAAGAGCATCCTCAGTGAATT
GGAAAGTTTAAAAAAGAGTCTATCAGTGAAACTGGTACAAAACCCTTCAA
GTGGGATTTGTTTTTGGTTATTATAAAATGTCCAGTCATTTTGCCTTATT
TTTACACCCAGGTTGTTTCTTGTAGCCTTACCCTTTCTTTTGAACCTTTA
AATTTAACACCAATTTTATTAATGACTGTACCCTACAATGCCTTTTCAAA
TGAAATGTAAACTTTAAAGGTGTCATCATGGTCTATGGATTGAACTCAAC
TTGTATACCTAAACAAAAATTGCAAAGAATTGAATTGGATATAACTGTTA
ATCCTAGGATAGAATTTGCCCTGGTACTGTAATGGACTATACAATAATCA
AAGAGAAATCTTACCAATAATGTCAAACAATTCTTTAACCTGTATTTCTC
AAACTTAGGCCAGTAATCATCTGGTTTCTTCGAAGTGCTTCTTTTTTCAA
TAATTCATAATTATTTGATAATACTTTAATATCGTGCTCCAATGTTGAAT
AGTTCTTTGGATAAACATTGCAAAAAATCCATTGCAATACAACCCTTTGC
AACAGTTTTTTCAAAGTTCTCATTCTTTTCTGTATTGACCATCTTAGTGG
TGAATAGATATTCCAACGCTTTCTTGGCATTTGGCAGAACATCCAAAGGT
TATCTTTCCAACATCTCAAACTTAACACAGGTATTACAATCTTTACATTC
ATCTGTCCACTCATGTGGCAGTTTGTGATGCTCTTTGCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048774-exon-scaffold_146-1575043694:456151..457229 | TCONS_00048774-exon-scaffold_146-1575043694:456151..457229 | Clytia hemisphaerica | exon |
| TCONS_00048774-exon-scaffold_146-1575043694:455138..456052 | TCONS_00048774-exon-scaffold_146-1575043694:455138..456052 | Clytia hemisphaerica | exon |
| TCONS_00048774-exon-scaffold_146-1510915933:456151..457229 | TCONS_00048774-exon-scaffold_146-1510915933:456151..457229 | Clytia hemisphaerica | exon |
| TCONS_00048774-exon-scaffold_146-1510915933:455138..456052 | TCONS_00048774-exon-scaffold_146-1510915933:455138..456052 | Clytia hemisphaerica | exon |
| TCONS_00048774-exon-scaffold_146-1491911889:456151..457229 | TCONS_00048774-exon-scaffold_146-1491911889:456151..457229 | Clytia hemisphaerica | exon |
| TCONS_00048774-exon-scaffold_146-1491911889:455138..456052 | TCONS_00048774-exon-scaffold_146-1491911889:455138..456052 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:455138..457229 - |
Blast
The following BLAST results are available for this feature:
|
