TCONS_00048826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048826
Unique NameTCONS_00048826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048826 ID=TCONS_00048826|Name=TCONS_00048826|organism=Clytia hemisphaerica|type=transcript|length=1852bp
taaaaacgaaaaaaaagaaTCATCGTCATGGCTGCACCTCCCGATATTTT
ACAACTCTCTAAAAGTCAAGTGCATTCATTTGAGAAATTTTGTTGCATCT
ATGAAGCCCTAAATGGACAGAAGATCGAATCACAAATACAAACAGTTCAA
TTGACAACCAATTGtttcaaatcaaatttcacACCAATGATAAATGTATG
TCAATGTGTCGTGAAGAAGCAAACACCATTAGTTATTTCTACCACGTGGC
ATATATCCTCATGTTCATCCTAACAGTCAGTAGTAATCTCCTCGTCATCT
TCGCAAtcctcaaaacaacaaaattacgATCCACCATTGCAAATTTATTC
ATCCTCTCACTCGCTTTCAGTGATCTTTTCGTTGGATTATTCATCATCCC
AATCAAAATCAAGAAATCGTTAAACAACATGCATTTTTGCTTGAATGATG
AATGGTGCCGATTTTACATCACCACagacaatgttttcttttcaatatca
aTTACAAATCTTCTTGTTATTGCTATTGATAGATATATAGCTTTACATTA
TACATATGCATACCCTCGAATCTTAACTCGAACACGTGCCAAGATTGTTA
TTGCAGCGCTCTGGTTTTACGGTATTATATGGGGATTCCTTGCAAATATC
CCTTGGGATGATTCTGGAAATGATGCAATAACTATCAATAGAGGATCGTG
TGTTTTGGAAAACTCGTATTATATTTATTCTGTTTTTGTGTTGGTGTTCA
GTATCCCGGTCATCGTCATGGGTGTCATCTATATCCGAATCTTCCTAATC
GCACGACATCACGCTAATGATATCGTGAACTCGACATCGTTGTCACATAA
TAACAATAGTAAACAAAATGGAGACACGCATCACGGAGACATTTCCCTCA
TAAAAGAGAAAAAGCCCAAACGACGAAGTATTTTGAAAGGGATTCGATCG
TCATTTACATCAGGGTTCACAAGGAGACACGATTCAGCACAATACtacaa
aatgattttcaaagcTAGTAAAACGGTGGCTACAGTTTATGGCACATTTG
TCGTTTCATGGGCTCCAGTTTGCATTATATCGGTCACGTTACACGCATGC
GTGGAATGTTTTGGTGCTGAACCGACGGAATCTGGTCACAAATGGTACAC
AGTCGTGTTCGTCAATTTCCTACCTATTTTAGCGAGTATGGCAAACCCTT
TTATTTATGCAATTTTGAGTAAGCAATATCGCCGTgcatttaaaaagatt
ttacttGGAGTTTATCCAAAAAGCTTCAGATGGATGCGGGAACAAAGTAA
TTCATCGAGTAAAGCTAGTAAAAAAAGCTATGCGGAATCTGTACTTCTAT
GAATTGAGACATTTAATCTTTACTAAAACAGCAGAAATGTGTaaatataa
aatgataaaacaatatAATTCTCTGATCAATCTTTTGCTCAAAGATTCTC
AATGATGGAGAACAATTGAGTTTTTCAGTCATATTTTAATCTAGAACGGT
cactattttttgttttaaaataatcAATAATAGTGTATAGTGTAAAAAGG
ACCTTCGATTGTGTTTCCCCTACCATGTAAGGATATATAATGGATAGTAT
ATTTGCATTAGCAGCCAGCAGTCTTTGGTACCTGCTGTGGATTTTGATAC
ACTTTCCATTGGTTATGATTCTTTGAAGCTCCTTATCCACCCGAAATCAT
caaattcaattaattttttttatacaaTTCCTCTTCTCTTTTCACCATCA
ACAGTATGATTGCTCTGTGAAAAAGTTCCTGTAAAGCTGCTTCTTCCAAT
AAATCTTTTGTTGCAAATATTCCTTTTTGTCactatatttctttttctta
tt
Run BLAST on NCBI

transcript from alignment at scaffold_147:86947..91495+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048826 ID=TCONS_00048826|Name=TCONS_00048826|organism=Clytia hemisphaerica|type=transcript|length=4549bp|location=Sequence derived from alignment at scaffold_147:86947..91495+ (Clytia hemisphaerica)
taaaaacgaaaaaaaagaaTCATCGTCATGGCTGCACCTCCCGATATTTT ACAACTCTCTAAAAGTCAAGTGCATTCATTTGAGAAATTTTGTTGCATCT ATGAAGCCCTAAATGGACAGAAGATCGAATCACAAATACAAACAGTTCAA TTGACAACCAATTGtttcaaatcaaatttcacACCAATGGTACGGTGGAA TCAAATCTTTTATTTGATGTACAAAAGCAATATGACTTACAATGAAGGTT AGTTAAAGGACATCGGCTAacgtatctcctaccatttgctcATACAGGGT GTGCTGAACAAAAGCCCTGTCTCAGAACACAGGGTCAAGTGGAAAGTTTT GTACaccatttttaaacaaaagaaggaactacatttttctctttctgtgC TGCGCgagcaaaaattttgagaaattcttttgtttatcacCTGCTTTGTC AGCACACAGGCGGCGCCATTctatattataaaaataatacCTTCGAAGCA TCCAAATAATtaagtttgaattttgaattgcaTTCTTTCTGACTTTTTTG TCTTGTCAATGACCATCAAGTCTGGATTTTTCAAATCAGAGGAATGTTAA AAGatgaaaaacagcttttctgattaaaCTCAaagatcacttctattgaa atccctattgtaaaaacgttaattataggtcattaaatgaaagtccagaa aagacggctcgccataaaaatcggacggtttctacatgatttgacgataa aaatgaaaatttatttttccttttttgccgattactagttcaaattttaa gaataaggagcaatattttaccaatgtataaaaaaagaaattcttaacgc aatgatattaaattggttcttgtaaaactgccagaagtcgagtaaaatca agatgaagttataattttctcgagctctagctttccatattatggtgcgg ttatatcagtagaatcgctaggaaattctgagcaagaagatataggtacc ttttcgtataggagaggtgtacccaaaacataagccctaaaagttagcgc ataatcaggcttgaaacaaaagaattttgtcacaacaccttaattatgca gattttttatagcgacaacaaatcaaacctatttactcgacataaactcc cttaagggcaagagacctggtatatgacgagccgtttttccattgttttc aagaagctgtttttccaactctttacattcctctgctcCTACCGTTATAT CCTAATTCGCTTCGCTCAAACGGATataacttattttctttttgaacaaa CTAGGGAATCAAAGTATTCAATATGGATTGCCGTGTATTTCGNNTTTATC TTGTATGAGGATACGGTTCACTGATTTGATACGATGAAAAATGGCTGTTA AGGTACCTCTGGGAATTATATATATATCTATAAATCAATATAACTTATAT CCATATGGGACTACTGTATTGAGAAATCGTGAGATCATATAGTTATTAAG GTTCCTTGGAGAATATATATCATTATCTGTTAGCCATAAAGCTTCTATTC ATACGGGAGTAATGTTAGAGAGAATTAGCTAAAATGTTTGTAACTATTCC CTAGtgtattcataaaagaaaatacattttgcttatacagcatttttaaa caaaagaaggaACTACATTTTCCTCTTTCTGTGCTGCACgagcacaaatt ttgagaaattcttttgtttagcaCCTGCTTTGTCAGCACACAGGCGGCGC CATTCTATATTATAAGAATAATACCTTCGAAGCATCCAAATAACTAAGTC CTCTCATTTGAATTGCATTCTTTCGGACTTTTTTGTCTTATCAATGACCA TCAAGTCTCGATTTTTCAAATCAGAGGAATGTTAAAAGatgaaaaacagc ttttctgattaaactcaaagatcacttttattgaaatctctattgtaaaa acgttgattaggtcattaaatgaaagtccagaaaagacggctcgccatac aaatcggacggtttctacatgatttgacgataaaaatgaaaatttgcttT TCCTTTTtcgccgattactagttcaatttttacgAATAAGGAGCAATTCT TTTACCAATGTAtggcaaaagaaattcttaacgcaatgatattaaattga ttcttgtaaaactgtcagaaatcgtgtaaaatcaagatgaagttataatc tTCTCGAGCTATAGCTTTCCATAtaatggtgcggtcatgatgcagTTATA TCTGaacaagaagatataggtaaaAGTATATTTTCGTATAAGTGagggtg tacccaaaatataagccctaaaattttgcacataatcaggcttgaaacaa aagaattttgtcacaacacgctaattatgcagattttttatagcgacaac aaaagaaacctataaactcgacataaactcccttacattcctctggtaac agtaatagaccttttcataaattacttcaCGAACATCACTGCCTCATGTT CAaataattaccatggtgattatgtctcttgagacattaaatagaaagta gttttaataaaatccgctgggagttaatcacctttgcaataatttcaaaa ccaggcaagtgatgttcgtgacgtaattcatgaaaaggtctattacccAC TCATTAATAAAATTGTCGTCTCCCTTCCNacaagtgatgttcgtgacgta actcatgaaaaggtctattacccACTCATTAATAAAATTGTCGTCTCCCT TTCAATCAATCTATTTATCTTGATTTGATTAAATAGAGTTGGGATTTGTC CTCACAGTTTCTATGCTGTTCTAACTCAGAGTAGGTATATATacaattca aaataataaagattttttatctCCTCTTTTATACAGATAAATGTATGTCA ATGTGTCGTGAAGAAGCAAACACCATTAGTTATTTCTACCACGTGGCATA TATCCTCATGTTCATCCTAACAGTCAGTAGTAATCTCCTCGTCATCTTCG CAAtcctcaaaacaacaaaattacgATCCACCATTGCAAATTTATTCATC CTCTCACTCGCTTTCAGTGATCTTTTCGTTGGATTATTCATCATCCCAAT CAAAATCAAGAAATCGTTAAACAACATGCATTTTTGCTTGAATGATGAAT GGTGCCGATTTTACATCACCACagacaatgttttcttttcaatatcaaTT ACAAATCTTCTTGTTATTGCTATTGATAGATATATAGCTTTACATTATAC ATATGCATACCCTCGAATCTTAACTCGAACACGTGCCAAGATTGTTATTG CAGCGCTCTGGTTTTACGGTATTATATGGGGATTCCTTGCAAATATCCCT TGGGATGATTCTGGAAATGATGCAATAACTATCAATAGAGGATCGTGTGT TTTGGAAAACTCGTATTATATTTATTCTGTTTTTGTGTTGGTGTTCAGTA TCCCGGTCATCGTCATGGGTGTCATCTATATCCGAATCTTCCTAATCGCA CGACATCACGCTAATGATATCGTGAACTCGACATCGTTGTCACATAATAA CAATAGTAAACAAAATGGAGACACGCATCACGGAGACATTTCCCTCATAA AAGAGAAAAAGCCCAAACGACGAAGTATTTTGAAAGGGATTCGATCGTCA TTTACATCAGGGTTCACAAGGAGACACGATTCAGCACAATACtacaaaat gattttcaaagcTAGTAAAACGGTGGCTACAGTTTATGGCACATTTGTCG TTTCATGGGCTCCAGTTTGCATTATATCGGTCACGTTACACGCATGCGTG GAATGTTTTGGTGCTGAACCGACGGAATCTGGTCACAAATGGTACACAGT CGTGTTCGTCAATTTCCTACCTATTTTAGCGAGTATGGCAAACCCTTTTA TTTATGCAATTTTGAGTAAGCAATATCGCCGTgcatttaaaaagatttta cttGGAGTTTATCCAAAAAGCTTCAGATGGATGCGGGAACAAAGTAATTC ATCGAGTAAAGCTAGTAAAAAAAGCTATGCGGAATCTGTACTTCTATGAA TTGAGACATTTAATCTTTACTAAAACAGCAGAAATGTGTaaatataaaat gataaaacaatatAATTCTCTGATCAATCTTTTGCTCAAAGATTCTCAAT GATGGAGAACAATTGAGTTTTTCAGTCATATTTTAATCTAGAACGGTcac tattttttgttttaaaataatcAATAATAGTGTATAGTGTAAAAAGGACC TTCGATTGTGTTTCCCCTACCATGTAAGGATATATAATGGATAGTATATT TGCATTAGCAGCCAGCAGTCTTTGGTACCTGCTGTGGATTTTGATACACT TTCCATTGGTTATGATTCTTTGAAGCTCCTTATCCACCCGAAATCATcaa attcaattaattttttttatacaaTTCCTCTTCTCTTTTCACCATCAACA GTATGATTGCTCTGTGAAAAAGTTCCTGTAAAGCTGCTTCTTCCAATAAA TCTTTTGTTGCAAATATTCCTTTTTGTCactatatttctttttcttatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031037XLOC_031037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048826-exon-scaffold_147-1491911889:86947..87135TCONS_00048826-exon-scaffold_147-1491911889:86947..87135Clytia hemisphaericaexon
TCONS_00048826-exon-scaffold_147-1510915933:86947..87135TCONS_00048826-exon-scaffold_147-1510915933:86947..87135Clytia hemisphaericaexon
TCONS_00048826-exon-scaffold_147-1575043694:86947..87135TCONS_00048826-exon-scaffold_147-1575043694:86947..87135Clytia hemisphaericaexon
TCONS_00048826-exon-scaffold_147-1491911889:89833..91495TCONS_00048826-exon-scaffold_147-1491911889:89833..91495Clytia hemisphaericaexon
TCONS_00048826-exon-scaffold_147-1510915933:89833..91495TCONS_00048826-exon-scaffold_147-1510915933:89833..91495Clytia hemisphaericaexon
TCONS_00048826-exon-scaffold_147-1575043694:89833..91495TCONS_00048826-exon-scaffold_147-1575043694:89833..91495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:86947..91495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0421137 0.024449 0.0717586 0.0582395 0 0 0.876706 0 0 0 3.14016e-08 0 2.0041 0 0 0 0 2.44555e-10 0.789967 0 0 0.6979 0.685489 1.00695e-08 0 4.19027 0.000207668 0.0479337 0.244184
Blast
BLAST of TCONS_00048826 vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.486e-25
Identity = 102/366 (27.87%), Postives = 170/366 (46.45%), Query Frame = 3
Query:  180 HTNDKCMSMCREEANTISYFYHVAYILMFILTVSSNLLVIFAILKTTKLRSTIANLFILSLAFSDLFVGLFIIPIKIKKSLNNMHFCLNDEWCRFYITTDNVFFSISITNLLVIAIDRYIALHYTYAYPRILTRTRAKIVIAALWFYGIIWGFLA-NIPW-DDSGNDAITI--NRGSC-VLENSYYIYSVFVLVFSIPVIVMGVIYIRIFLIARHHANDIVNSTSLSHNNN---SKQNGDTHHGDISLIKEKKPKRRSILKGIRSSFTSGFTRRHDSAQYYKMIFKASKTVATVYGTFVVSWAPVCIISVTLHACVECFGAEPTESGHKWYTVVFVNFLPILASMANPFIYAILSKQYRRAFKKIL 1253
            H  D  ++  R+E   +     ++ I++ I  V  N+LVI AI K  +L+ T+ N FI SLA +DL +GL ++P      L  M +   + WC F+ + D +  + SI  L VIA+DRY A+   + Y  +LT+ +A+++I  +W    +  FL   + W   +  +AI    N   C    N  Y  +  ++ F +P+++M  +Y R+F  A+     I  S    H  N    +Q+G T HG           RRS      S F     + H          KA KT+  + GTF + W P  I+++ +H           ++  +    + +N++  + S  NP IY   S  +R AF+++L
Sbjct:   18 HAPDHDVTQERDEVWVVGMGIVMSLIVLAI--VFGNVLVITAIAKFERLQ-TVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHG----------LRRS------SKFC---LKEH----------KALKTLGIIMGTFTLCWLPFFIVNI-VHVI--------QDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 340          
The following BLAST results are available for this feature:
BLAST of TCONS_00048826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADRB22.486e-2527.87Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB... [more]
back to top