TCONS_00048852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048852
Unique NameTCONS_00048852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048852 ID=TCONS_00048852|Name=TCONS_00048852|organism=Clytia hemisphaerica|type=transcript|length=469bp
ATTTATTTCAAGTGACTCCTTTACGGAGgtcagacagacagacagaaaaa
tgaagattcttAATATTCTAATAATTTTAGTTAATTACTTGGTGGTTAGC
ACCAATGCGAATTGTGATCTCGATCTTGGTTTCATTATCGATGAATCTGG
CTCCATCACCAGtacagatttcaaaaaatccatcGACTTCGTCAAATCAG
TAACACAACAATTTAACGTTGATACATACAAGACTAGAGTATCAATTATA
ACTTTCTCAAATGATGCTGTTCAACATTTTGCATTCCGAGATTGGTATGG
ATACAGTCGACAAGGCTTGGATTATTATCTACCACGAATCCGCCAACGAG
GTGGGGGAACGTACACGAACAAAGCGTTGGATTTGGCACGAACCAAAATG
TACACCCTGAATAGCGGTGAACGACACGATAAAGTCAACGTCCTTGTGGT
GATTTCAGACGGAAAGAGC
Run BLAST on NCBI

transcript from alignment at scaffold_147:157841..162816-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048852 ID=TCONS_00048852|Name=TCONS_00048852|organism=Clytia hemisphaerica|type=transcript|length=4976bp|location=Sequence derived from alignment at scaffold_147:157841..162816- (Clytia hemisphaerica)
ATTTATTTCAAGTGACTCCTTTACGGAGGTCAGACAGACAGACAGAAAAA
TGAAGATTCTTAATATTCTAATAATTTTAGTTAATTACTTGGTGGTTAGG
TAAGATTTTACTTGTTGAAGGGGGAGGGGGTGAAATGATTTCAAAATGAG
GACATCAAGAAATTCATTTTTCAATATAAATTTCTCAATACAGTGGGCAC
CATCTGAGAATAGGGTCAGTGTCCGCTAACTAAAAGTGTCCGCATTTTAG
AAACTTTTCATCTATGTTCTAATTTTGGTATAACGTACTATTAAGGGGTT
AAANAACTTTTGATCTATGTTCTAATTTTGGTATAAGGTACTATTAAGGG
GTTAAGTATGTAAAATTTTGGACCTAAATGCGTATTTAGAGACACTAGGA
CATGGAAGAACAAGAAAATGATAATTCAAATGTGACAATTTTAGTTTTTA
TGAATCATAGTAGTCTTCAGGGTCCTGCAGTTTATCATTTTTATTACTTA
AGAAAATTCACCGACTGAATAAAAGGAGTGCTCGTCTTTAAACAATTAGT
TTAATGAAACATTCAAGTATTTTTATAAGAAATAAATAGTTTGGATAAAT
CAATCCTATCTAATCATGGATATTGCCCTTATGTATTACATTGAGGTGAA
ATCTTTAATAAATTTTTAAAGTTTGTGACCAGTTTGACCGTCGATGTCTG
CTAATTAGAGAGGAAAAAGTAGGGTTTCGTCTATTTCGTGCAGAAAACTT
TGTCCACTAAATGGATTGTCCGCTAATTGAGTGTCCGCCTTTTGGAAACT
TTATTATGACGATTTGAGTAGGAAATGACCGGGGAAAATTGAATTGTTCA
CTAATCAGAGGTGTCCGCCTTTTAGAGTGTCCATTGATTAAAGGTTTTAC
TGTATAATATTTTTTTTCGAAAAAGATGATTGCATTTTTATCTTTGAAAC
TATTGTTCAGTTAGTAGCTCTACCTCCATCTATTTCGAACATTCATTGTC
GAGAACAATATAGAATGAAGTCAGAGCAGGGGTGTGTTGGTCCAGTGGTC
TAACGCGTTAGGGCAACAAGGTAGAGGTTCCAAGGAGTTCGTCCATATCA
AAATTATCCGATAGGCAGGTCAGTTGGCCACCAATAAATGGACCCCGTGA
AAATAATTGGGAGACTGTTTCAAGGTTCCTATGTTACTGAGCCTTTCAAA
TGAAGTATCGACACTGCAGGCACAGTGGAAGCCTTTTATATCTGGTACGG
CGAATGAGGAAAATTAAGCGATTTTATAGCGATTTTATAGCGGTTTTACC
GACGAAGAAGAAAATTTCGGGGTTTTTTGTGAAAATCTGGTACGGTGGCC
GCCGTACCTGCCGTACCCTTTGCGTCGTTCCTGCACTGTATATACAAACG
ATTGTCAATATTTTCAGATCAGTTCATAACAGTTAAAATGAAATACCATA
TACGTTAAAACGGGGAATAATTTTGAGACCAACAAAGGCTTAATCATCAG
GAACATCGTGGACCATAAATATTTTTATGCTTAACGCAAACAGAGCTGCA
TTCACATTATTTTTTTCAAGCAAGATTCTCATCATAGAAGGTAATTTACC
TCTAATAAAAACACGTGCTCATCTCAATTAGTCTCACTGTTGTTTTAGCT
CAGTTAAATCAAGTCTTGTATCAGTCAAACCAAGTCTTGTATTGTTTTAA
TTTTTAAAAGAAAAGTTACCCATAGTGACACTCTCGCTATCAAAATATAC
GACAGCGGTACGCCTAATTGTATAGAAATTACATCACGTAATTCTACTCT
CTCCTCGTCTTTATGATATTCCTTGTTGTTATAATCTTTTTTACTCTCGG
GTACCTAATATTCGGGAGGGCGGGGGCTGAAAAAATCTCAAAACTTAATA
AGAGGCTGGAATAAAAATGTCCTGGCTNCTGAAAAAATCTCAAAACTTAA
TAAGAGGCTGGAATAAAAATGTCCTGGCTGGATAATGTTTGAAAAATTAA
TTAGCGGAGGCTGCTATTAGGTACCCGAGTGTAGTAGGCTTTCCTTTTTT
AAATAGAGTGGTTCTTGGCGTGCAAGAATCAACCCTTGAAGAGTCTTTTT
CTTTTTCAAAATCAACTTTTAATGTTTACGGCGTTCGAGACCTAACATGA
ACTACAGCTGACCTAGCCTGTTAGACGAAAACCGATTTTTTATCGCGATT
TAACTTTAATCTTAAAACAAAGAAAAAGTTTGGTTTGTGGGAAGGCACTG
GCTACAGATGACCCTTATCGCTTATACATATCTAGTACTATTTTGCCATA
AGTTCTTGCGCTAAACCTCTATTGGTGACGTGAAAACTAAACGTAACCTA
CTAACGTGCTTCTTATATACTCTGGTACGCTCGTACCAGAGTGTCGGTAT
TGACCTTTTTTTGCGTCGGTATTTCGGTATAATTTTCAATCGGTGATACG
GTAATTTTGGAGAAACGGTGCTAAATCAAGGGCTATTTCTCAGAAATTCC
TCTTATCCTCTTATCTCATATTAGAATTTTGAAAAAACTATGAAAAAATG
ACGGTGTCGGTATTTCGTAAAAAATGTGTCGGTATTGCAGTGATTTTGTG
AAAAACTGTTGGTATTTCGGTGTCCTGGACCCTCGTACGCTCCCACTATA
GAGGTCTGCGATTCAGACTAATGAATTGCAGCATTATATACTTCCTTGAA
ATATAGGAGACTTTATCGGTAGAAGTCGTGTGGAAAATCTTAAAACGATT
TTCACCACAAAGTTTTCTTTCTTTTTCCTTACATACAGCACCAATGCGAA
TTGTGATCTCGATCTTGGTTTCATTATCGATGAATCTGGCTCCATCACCA
GTACAGATTTCAAAAAATCCATCGACTTCGTCAAATCAGTAACACAACAA
TTTAACGTTGATACATACAAGACTAGAGTATCAATTATAACTTTCTCAAA
TGATGCTGTTCAACATTTTGCATTCCGAGATTGGTATGGATACAGTCGAC
AAGGCTTGGATTATTATCTACCACGAATCCGCCAACGAGGTTTGAAAATC
TTTGTTTTTTAAAGTGTTTGATTATAGATATATCTATATGATAATAAAAC
TCTAACCGGTGTAACAGAAAATAAGTACTTCCCGCAAAATAAGTACTCCC
ACTCCCACTCTCCGGTATTTTTTTTCCGAGGAAATTTGTCCCACTAAACT
TGTACTTGCTACAAAAGATATTTAAATTTTAAGAAAAAGTGAATATCTTT
ATAGAGAGAAGACGCCCTCTTGGATATATACTTTCGGGAGTACATTTTTT
CTAGGAAAATGGTACTGTATACCATAGACCTTCACAAACACCGGGTTGAA
AGTAAAATCTATCGCTAAGGTTTAAAAAAATGCAGTCCTCGAAAACAAAG
GATTGCGGCGTGTTCTGGATGGGAAATAAGTGGCTTCACTTTTTCTTGCC
TGGGAAAGGTTAGAGATTCTACTGTATCCTTTCGGGCTTTAAACTCAATG
CATATACTGTTAACAGTGAAGATTCTGTTTGCGTTCGAAAAAATGGCGTT
TCTATACGACTCCATCGAGATAAAATGTTCTCTTGTTATTGCTATCCTAA
AGTCTGTTAAAAGTTTATTTATACTTCGTTTCATTTTAATCATTGCTCTT
GGTTAGAAAATTAACATATAATCATCAGTATTACCTCGTTGAAAAGATAA
TTTTGAGTGGATAGGTTTAAGCATTTTCTGAAATTTCTTTTGAAATTGAA
GATGAAGAATGAAAATGAAGAAAGTGAAGATCTTTTCCATCTTCTCCTTG
TACAAAGAATTTCTTCACTGCAATTTTTTTTAACAGACTGTAATAAAATT
AATATTTTCTTATGTACAGGTGGGGGAACGTACACGAACAAAGCGTTGGA
TTTGGCACGAACCAAAATGTACACCCTGAATAGCGGTGAACGACACGATA
AAGTCAACGTAAGCTCATGCTACATTCTGTTTTTGTTAACAAAATATTCT
TCTCCTGATTTTTCAAATTTAGCCTTTCCAGAAAGAAATTGAATTTGGAG
GTAGAGGATACAAAATATTTTAGAAATTCACCCCCCCCCCCCCCACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACACTATATCCTATATATGT
ACGAACATTTTCTGGAAGAGCCCATTCTTAGATCTTCCTTTTAGTTTTTG
TGATAAACTTTTGGATTTTTAATCATTCATATACAGAAAAATCCTTGTTT
TCACTTTACTATTTGAAGAACGAAAGCAGACAAAATCTTCCTCTTTTTCA
AGTACTTTACGATTCTAATTGGACAGAGTAAACTGTGTTCACCCCCTGTA
TAAGTATCGGAGAAAGAAGTTTTTTCAGAAGAAAGTGGATCAGTTTTTTG
TATAGAGTAACATTTCATAGAATGCACAGGGGTCCAGCCCCTAGCAATTT
TTAGAAGGGGGAGGGCTATGAAAATAGCCCCCAGCTAAATTTTAAAAAGC
CCCCACCTCCACGAAAGGGAAAATAAAAAAATTTAGCTTGAAAAAAGCTA
AATTGATGCGCAATTTTAAGGCAGGAGATAAAGACTCATCTCATAAAAGA
TAAAATATACCTCAGTTTGATTACTCAAAACATAGCCCCCTTATTGAGTT
AGCCCCCAGCATTTTTTTTAATCGTCCCCAAATAAAAAATTTGCCTCCCT
CCTAATCTCAGGGAAAGGGCACCCCTGACCACAATACATGATTTCTAATC
CAAGAAAAATGTCCAATCGATTAAAAGAAATTTTGTTCATGTAAATTCTG
TTTCACTTTTTTCCTACTCTTGTTTCGGGGTTTACCTTTTTTTCAGGTCC
TTGTGGTGATTTCAGACGGAAAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031044XLOC_031044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048852-exon-scaffold_147-1575043694:162718..162816TCONS_00048852-exon-scaffold_147-1575043694:162718..162816Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1575043694:159778..160028TCONS_00048852-exon-scaffold_147-1575043694:159778..160028Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1575043694:158859..158947TCONS_00048852-exon-scaffold_147-1575043694:158859..158947Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1575043694:157841..157870TCONS_00048852-exon-scaffold_147-1575043694:157841..157870Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1510915933:162718..162816TCONS_00048852-exon-scaffold_147-1510915933:162718..162816Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1510915933:159778..160028TCONS_00048852-exon-scaffold_147-1510915933:159778..160028Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1510915933:158859..158947TCONS_00048852-exon-scaffold_147-1510915933:158859..158947Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1510915933:157841..157870TCONS_00048852-exon-scaffold_147-1510915933:157841..157870Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1491911889:162718..162816TCONS_00048852-exon-scaffold_147-1491911889:162718..162816Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1491911889:159778..160028TCONS_00048852-exon-scaffold_147-1491911889:159778..160028Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1491911889:158859..158947TCONS_00048852-exon-scaffold_147-1491911889:158859..158947Clytia hemisphaericaexon
TCONS_00048852-exon-scaffold_147-1491911889:157841..157870TCONS_00048852-exon-scaffold_147-1491911889:157841..157870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:157841..162816 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0981622	0	0.17737	0	0.150005	0	0	0	0	0	0.386355	0	1.68196	0	1.17361	4.61486	0.0499452	0	1.59801	0	0	0	0	0.39852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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