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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048827 ID=TCONS_00048827|Name=TCONS_00048827|organism=Clytia hemisphaerica|type=transcript|length=699bp
CCCCGATTTCACAAAACCCATCATCACAGGATAGAAATGTTCCAGTAAAA
AGTCACAAACAGAGAAGGAATCAAATAGCGAAGCAGtCTTACATTCTGAT
GACAAAACACGCTGACGTGTTGGTTTATCCAGGAAGAAAACAGAGGAAAT
GCATTGTTGGATCTATTGATGATCAAATGGCCTTATGATTtataatttta
catatttttaattgtatgtatttcaaagattgtttgtAAGACCacgttca
gacgttacggttccgtattGTTCCAAAAAGAAACGGTTCTGTGTGAACGT
GTGAACACCAAAATTTGAAGACGTTAcatacaaagcaaaacagatcgaaa
cggttttgttccactattttcatcggaacggaacggaactgctccggaAC
GTttcgaaaccaatatgaacactctctATCCCTAACGGAAACTATACCGG
GACGATATGACATGAAACTGTAACGTCTGAACTGGTTTGAGCATGGTCTA
AATTATTGTTAATCAATAAAAAAAGGTTGTTCCAGTCTCTTCTTTTGAGC
AACACGCACGTTGTCCCCAGCCATCCAAACATTGTGTATGTACGCAATGG
TTACTTGTACAAGAATGGTGGTGGTACACTAAATAGATTGAACAAAAAAT
TCGGCATATAGTGTGTCGTTACAAAACGAAAACCCAGGTAATATATAGC Run BLAST on NCBI transcript from alignment at scaffold_147:209556..217904+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048827 ID=TCONS_00048827|Name=TCONS_00048827|organism=Clytia hemisphaerica|type=transcript|length=8349bp|location=Sequence derived from alignment at scaffold_147:209556..217904+ (Clytia hemisphaerica)
CCCCGATTTCACAAAACCCATCATCACAGGATAGAAATGTTCCAGTAAAA
GTGAGTGATGCACCACTTACCAGAGGCGACGCCAGACCAAAATTCTGTAT
CTGCTGTATCTGTATAGGTACTTATTACTTGTGTGTTTGTGCATTGTTTG
TGTAGGTGTTCGAGCAAAGTGCTCAGGTACCCTTTTCAATTGAAGTGTTT
TTTAAGTTTCTTATGCTCTTTGGCTGTTTGGCATTGCATTAGGTATAGTT
TTGCACCTTGTCCTTGTACACAAAAcgaaagcatccaacgaggacctttt
tttaaacatctgtttcccgggcatagccttcctggaaaatttgatctgtt
ggccaaaagtttcaaaaatcttattactagaaatgaagatctgtttctcc
tcaaaacctaaatttttaatctcaaagtataaagttcaatctgtttccaa
tgcaatatcatctttctgGAAACAGAtaagatatctgtttcccaatttat
tacaTGTCATCTCCTAGTAATATTGATCTGTTTTTCTCTGatcactgatg
acgtcatcagctggagcggggaaacagatagttttaagaaaatggtctct
cctagaaaatcggatctgtttccccatttttccaaaaaagcgctctcctg
gaaaagggaaacagatatttcggggaaatgggctcgttggctgcttctga
caAAAGAGTGCAAAGCtacgaccctgccggtgcacccgacagtcgggggC
TGTCGGGGGGTTTGTCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTttcta
aatttgcgaaaacacccgacaattagtgcacccgacagtcgggtgcttaA
ATTCTTAACTTAGTGAGAGCACCCGACGATCAACACCCGACACCACCTGA
TTTACATTTGGCGGCTTTAACGCCCGATACTGTTTACCGCCATCTTCGCC
GATGCCGTGGTGGGCGTCAGTCAAATTATATGTACCTCATCGGCCCTTAT
AGGCGCTATGTTTTCGTCACTGCTGGCGTAAAGAGGCCGGCGTAAATCGG
ATCANTTATAGGCGATATTTTTCGTCACTGCTGGCGTAAAAAGGCCGGCG
TAAATCGGATCAGCGATCTGAACTATCTGGGGTTTTTTAGAAGTTGGGTT
GACTTTAGCAGACGATTTATGATTCTGGAAGCTCTCTTATCCATGAAGCA
ATTGTATCGCGTCCATCAGTAAAGTTAAATAGTGCAAATGCATGTGACTC
TGGGAACGAGTTTGGGCGCAACCTCGTCCCGTGTATCCTAGTGGATaatc
tatgataaagaagtacggaggtaatcaaatttgtcgaatttgtcaagaaa
taaatcaaaactgcccaagaaccaacaagccatctttgtacatttttgtt
tttgatttatttttatgttttgacaccctcgcgagccagggccgataaac
gattctgcgacttaaagaggccagtaccgtataattggaggaatcgttta
gggccctggtactttagaagagaaaaaaaatatcaagaatcttgatattt
ttcgacctttggactctGGCAGCTTGAGTGTGGGCAATATGTTGCGAAGA
CAAGTACAGCCGAGCTGCGAGCACACTTANTTCGACCTTTGGACTCTGGC
AGCTTGAGTGTGGGCAATATGTTGCGAAGACAAGTAGAGCCGAGCTGCGa
gcacacttactaaaataatttatatcaaaatgctgtaaatagtttttctc
cgtatgaccatttgacatgggaaaagaaaataatgttgatttggacattt
ggaagggaaatgcaagtagaaaatgactgtgtttgttttttggaatagag
aatggctttcctccgtcttttaatggttttttactggctcaaaataaatt
agtagccttgcaataagtctcaacttccaaTTACTGTTTTCTAAATTTGG
CTCTCTGATATGGATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACATCATCATTGCATCTTGCTTTTGTGACTAATTGGCTGATT
GGAATAAGCATGAGCTATAAAAACTTTGAGAGATTGCACTATTTGTTAGC
ACTGGTTTTCCAGGGGATGCTAAATAACTAAATGCATTGCTCAGTCATCA
GTGTcagttgaagttaattttaaacatttggccACTGTATGATGTTTAAC
TAgtttaaataataagaaagaaaagattgatggacactttatggactgtg
taacaattaagagtgaaaatgcttgactgcttgatctttgttactttcac
ttcactgaaaaacaattatttaacgaaaagggacaattggagataaaatg
gtgaaatcagcaagaggcaaaaattgcgaNNNNNNNNNNNNNNNNNNNNN
NNNCTTAgtgtgtacgtactatgtggacggccccttaggaaaatcactgg
aaattttaattctggcaagaacttattagggacccttattatggtgaggc
aaggtgaggaagcaattctttcaattttggcgataactaatttcggtgaa
ttttgttctgttactatatcatcattcattaagaatttatttatttattt
agagaacacattgaactatgtaaaatacccatttgaaattttatgaaaat
tttaatgctagCTATGAATCATTGTATAGAGTTTGGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCAAAttgaattcctg
ccaaaatttcttccttcaaggtacacgtttttttttttataaggaacacg
tttataaggaactcgaggctgaatttggttcaaaaaatagggaattgtta
aggaactgcccaggctgagaataagtggatttgaaaataatgtaccctat
tgggactaatttgaccaaattttgatctttcaaggggcaaaaagttcaaa
atttcctatgtagtaaggaactcgataaggaactttgagactgaaattct
ctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgtattattatcaattttgtcaagtctcgagaacagtgaaggtaaagta
caatgattccaaattttatttttgtctttaatggttcctaatttttgatt
gaaaaaagttccaaaaattaatcttgttttatcagtcctttcagcttcaa
agtatcagatgctttaaaatgaaacAGCTTTGCTCCAAAGAAAATGTGAC
ATAAATTTACAAAAAAAAATCAGAGATATGTATTCAATTTTTTGTAGTAA
ATTTCTCAATCATTTTGTATCAAAATAACAGAACTTGAAATGAAAAGACA
TATATAATCTTAAAGTtctattctggaattttgaccaaaatgtagttgat
tgctatcttttgaaacaatgtccaGAAATATTCATCTAcgtataaaataa
taaaatttgacacttaatacagcttatgaaaaaaaatctgtcaatgttac
tttagaCTGTATTCctatttgattttatcctcaaaataggTTANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCTAACATGTCATAATTGATATTGATAATCTAGATGACAGATT
TGTTATTtatatgtttgcataaattttatcccgataaaaaaactacttcc
agcTTCAACATTATTTGTCAAATTCAGTCCAATATACACACTGTACCGTa
ctagtttgtatactttttgacatttacggtcaatataaataaattttcag
tctggtaataggatatgtttaaagaattgtttcatgGTAAACATTAAAGA
AACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtttattagagggatttttagagtgtctcttatt
ttgctagcaacttgtgaattgaggtggagtctggatcgcttcgcaaccct
tatacaatacggctagtttacGTTACTGATCGATACCTGACATTCAGTGT
AGAcataaagctctaaaacagcatctaataacatgaaaaccagaatatga
ttcttcaatgggaatcaaaactataaagtgcacttacaaacatcaatttg
tcagatctaacaaaattaataaccacactgtcatcattgacaataaaaca
aaagattttctgtcaagagccttgtaaacattccaacaacttccatctaa
atgatctatcacagctcagtttaccattttagcgcggtccgaggattgag
ccgagaactctcgcatagcacccgagctcccgcgcggcgcgtgccgcggg
gatgaaaaacttcaatctgtcaatcattttctcaagcgaagtgtacgcga
agtgattctagctttacgatagtgccgcggatcatcaatggatagtattc
aattatcattatccctttattttcattcctagaacttttgcaaaaaaaag
gaaaaatagaaaagttgtattttttactgccctattcacatactgaattt
gaaNNATTTTGTCCtgcctttgcgggattttggctcaagtgcttgagtgc
agcatagggttcaaagtccaaatatgcgtttcccgtaatttttgtatgaa
gagttaggtctatactgacaTTAACCCTTTACCTTCAGGAGCCAACCTCT
CATGTCAACTAAATATCTATCATCATTCTTTTTATTTAGAGTCACAAACA
GAGAAGGAATCAAATAGCGAAGCAGGTAATTAATTAGATATTTACATTTT
AGTGTGGTGAACTGTAATTAGCCGTTATCGTAAAAGATTTGTCGTGTCTT
TCTTTCGATTCTGTACTTTGATCATATCAGTGTTTCGATATTCTTAAATT
CGAGCCTGCACTTGATGGTCAATCTATCTCTCATCCGTGTTTAGGTTTGA
GGCATGACATTCCgctctctttttctctcttcttttttcgttttagtCTT
ACATTCTGATGACAAAACACGCTGACGTGTTGGTTTATCCAGGTAAGACG
TATATTACCTTTAATATCATGATATAAATAGCTCAATCTCATCTGACATT
TAGTTTCATGATGACGTAATTTCTATGGCGTTCTAAATGGTCTGTGTAGA
TACGTGATTCTGCATTAAAAGCTAGTTGTAAGTTTACTAACGACGTACGT
AAGTGCGTGGAGACAggaatgacttttttcaaattggtTAATCTAAGgat
atttttaagaatatttaccGGGATTTTataatctcagacataatggaTAC
TAAAGCTGTGGATAGACAAGAGATTTAAAATAGAGGGCGGTAGTTTATTA
GTTAATCTTTCTACTTTCTATCTCCTTCTCAGGAAGAAAACAGAGGAAAT
GCATTGTTGGATCTATTGATGATCAAATGGCCTTATGATTtataatttta
catatttttaattgtatgtatttcaaagattgtttgtAAGACCacgttca
gacgttacggttccgtattGTTCCAAAAAGAAACGGTTCTGTGTGAACGT
GTGAACACCAAAATTTGAAGACGTTAcatacaaagcaaaacagatcgaaa
cggttttgttccactattttcatcggaacggaacggaactgctccggaAC
GTttcgaaaccaatatgaacactctctATCCCTAACGGAAACTATACCGG
GACGATATGACATGAAACTGTAACGTCTGAACTGGTTTGAGCATGGTCTA
AATTATTGTTAATCAATAAAAAAAGGTTGTTCCAGTCTCTTCTTTTGAGC
AACACGCACGTTGTCCCCAGCCATCCAAACATTGTGTATGTACGCAATGG
TTACTTGTACAAGAATGGTGGTGGTACACTAAATAGATTGAACAAAAAAT
TCGGCATATAGTGTGTCGTTACAAAACGAAAACCCAGGTAATATATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048827-exon-scaffold_147-1491911889:209556..209605 | TCONS_00048827-exon-scaffold_147-1491911889:209556..209605 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1510915933:209556..209605 | TCONS_00048827-exon-scaffold_147-1510915933:209556..209605 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1575043694:209556..209605 | TCONS_00048827-exon-scaffold_147-1575043694:209556..209605 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1491911889:216695..216730 | TCONS_00048827-exon-scaffold_147-1491911889:216695..216730 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1510915933:216695..216730 | TCONS_00048827-exon-scaffold_147-1510915933:216695..216730 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1575043694:216695..216730 | TCONS_00048827-exon-scaffold_147-1575043694:216695..216730 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1491911889:216952..216997 | TCONS_00048827-exon-scaffold_147-1491911889:216952..216997 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1510915933:216952..216997 | TCONS_00048827-exon-scaffold_147-1510915933:216952..216997 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1575043694:216952..216997 | TCONS_00048827-exon-scaffold_147-1575043694:216952..216997 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1491911889:217338..217904 | TCONS_00048827-exon-scaffold_147-1491911889:217338..217904 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1510915933:217338..217904 | TCONS_00048827-exon-scaffold_147-1510915933:217338..217904 | Clytia hemisphaerica | exon |
| TCONS_00048827-exon-scaffold_147-1575043694:217338..217904 | TCONS_00048827-exon-scaffold_147-1575043694:217338..217904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:209556..217904 + |
Blast
The following BLAST results are available for this feature:
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