TCONS_00048834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048834
Unique NameTCONS_00048834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048834 ID=TCONS_00048834|Name=TCONS_00048834|organism=Clytia hemisphaerica|type=transcript|length=1377bp
ggACTTCAATCATCTTTTGGATTGCTTGTTAATCAAATACCCAAAGTTGG
AAGAATCCCAGAAAGTTTTGAACCATTGATATTCCACAAACCTGGGAACG
TGACCTAGAATGATATCAATTTTCAGAGCTTCAATTAgcgaggcatcaag
taccattttgggagaATTTGGTATGACCCTACTGACGGTCGAATCCACAA
CCTTGTGCACCATAGCTGAACATTTCGAAATGTTAATTTAACATTGCAAC
ATTTATGGGCTGACCCACATACCAGAAGAGCGAGATGGGTGCTATAAAAG
AAGCCAGAGAGATGTACTGTCAAATCGTAGAAGATAACAACACTAAACGA
AAGAAGAAATTGTAGCATACCAAAAAGGAAAACTACCTAAACCACTGACA
AAATGGctacaaaatattacaaaaacatGTCCGAAAAAGATTTTCTCGAT
GTTTTCCGTAAAGAATATAAAGTTGATGCCGTCACTTTTATGAAGGCTTT
TGAAGAGGCAGATGAGGATGGCAATGGACAAATTTCTTCTTCAGAACTCA
TTaaatttttaaaagcatTGGGTGTGGACGCCAAAGAAACTGAAGAACTC
AAAGAACACATTATTGAACTATACGACAAAAATCATGATGGAAAACTTGG
GCTAACAGAACTCTCAAAATTATTACAATCTGATCAAAATGTATTGAAAG
CCTTCGTCGAGgGTGAAGACTTAACAGAAGAAAAATTCAATGAAGTTTTT
GCTCACTACGATCGCGATAACGGTGGTACGATCAATAACAGTGAATTGAG
TGGTTTCTTAAAAGATATGAAGTCAACACAAGATGTTAATGTGGAATCGA
AAGAACTGAAAGAATACGAGATTTGGATCCTCGGTGAAGCAGATAAAAAT
AATGATGGTGAACTTTCAAAAGATGAACTTCGAATGTTATTCTTCGGTTA
AAAACAAGACTCCACGATAAAAAAATATCGTATTTGTATACTGAGAATTA
GCTTTTTATAGAGTAAATTTATAATGTGTTAttaatttttgtacattttc
atATTATTTCAAACTAAATTTTTGACTCTGATACTTCTGTCAAATATGCT
ACATTAATTACCAACTAGTATAATCAACATGGTACATTATAATATTTCGT
TCTTATTTctttctttgaagaaaattacTCTTGATTTTAAGATGTTATAC
AACTCAGAGAAATTTAAGGACTCGTTATCTTCATTGAACTACAAAGAAGc
cattgattttttctgcaaatattatataattgtttttttgtaaacttcta
ctatattatatattatatctATATTCTTATAATATTTTGATGATTACATC
GAGACATCAATAATGCAATAAACATTC
Run BLAST on NCBI

transcript from alignment at scaffold_147:240031..253861+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048834 ID=TCONS_00048834|Name=TCONS_00048834|organism=Clytia hemisphaerica|type=transcript|length=13831bp|location=Sequence derived from alignment at scaffold_147:240031..253861+ (Clytia hemisphaerica)
ggACTTCAATCATCTTTTGGATTGCTTGTTAATCAAATACCCAAAGTTGG
AAGAATCCCAGAAAGTTTTGAACCATTGATATTCCACAAACCTGGGAACG
TGACCTAGAATGATATCAATGTAAGAAGTGCGTTTCTgaaaaaggcttta
aaaatccACGTTGCCTATCTATTCcagtttttagatattttattaATCAT
GAATCCTAATAATTTTAACCTTTCGTaggtttgcgaccgcagtcgagggc
gacccgaaggctcccttttctttAGCTGTCTATCCAAAGGTAGAGGAGGT
TACCATTTCTTTTCCTTGACttttccacttacccttgatccgtctcttca
GTTTCAGAGCTTCAATTAgcgaggcatcaagtaccattttgggagaATTT
GGTATGACCCTACTGACGGTCGAATCCACAACCTTGTGCACCATAGCTGA
GTATGCTACGTAATCACGGTTTCTCGGACGGTAACGCTACACTGTAAtca
cctccgccactgctttCTCCGCCTCGGGCTAACcaacgttttcaaattta
tcccgcctcctaaattattatttttttagtgatcttgtgtagacgatccT
CGTGTATGTAAGACACACCAAAAAAGAATAGTTGTTTTTATGTGCTAAGG
AAGGGTCTATAGCACTATAGCCTTcaattatttagattttttcaaagccg
GCACAATTTTAGATCAGGataatttttgtagatttttataaatttttctg
TCTAAAGCTTCCCCATAAGTAGAGATATATTTTAATATAATGATGTTGCA
TGGGGTGCAAATTAATCAAAAGAGTTGTAAGCTAGCCCGGTCTGTTAATT
TCTCCTTTTAGAAAACTCACAGTTGAACTGCTTTCTTGTTTCTTAGACAT
TTCGAAATATTAATTTAACATTGCAACATTTATGGGCTGACCNTTCTTAG
ACATTTCGAAATGTTAATTTAACATTGCAACATTTATGGGCTGACCCACA
TACCAGAAGAGCGAGATGGGTGCTATAAAAGAAGCCAGAGAGATGTACTG
TCAAATCGTAGAAGATAACAACACTAAACGAAAGAAGAAATTGTAGCATA
CCAAAAAGGAAAACTACCTAAACCACTGACAAAATGGTAAGAAAATTGAT
AAACATTTCAAATAGATTTCTGCAGCTTTCAGGCATCAAAAGACATCGGT
TGCGTGTGTACCAGGGTCGAATGACGTCAAGTTCTTCAATGTAACGATTC
AATACACGTGACACCATGTGGCCCTACTTATCTCGATACAATCCTCTAAC
TTCCAACTAGTTGTAATAGAGGTGCCTTCTTTTAAATTCATtggaatttt
aataaatttctatAGGTTCTTTCAACTATTGGTGAGTCCTATCCTAGTAA
CTCAGTAGCCAGTAGCTTCTTTATTATATCGTATTCCTAAAATGGAAATT
AGAACTTCCGAAAGAAGGAATCGCgcaagaaattttaaaagagaTACAAT
GTTAGGCTTCAAACTGGGTTTAATTTATTAACagtcagattttgaaaaaa
atgtaatacTAAGGTTAGCTTCCTTTGTCTAATGCTCTTTAAATTATTTA
TCATCCTGTGTGATTCCTTTACCGGTCAAACCGGGGGCTATTCCGGGACA
CTTTGATTCAAGGATTAGATTATCAgaattataattttaaaaagtcttTC
CCGAGAACTTCCATACAAAGTTTTAAATTTATACAGAAAGGTTCGTCGGT
CTACTTTATTTAATGTTGACTTGATGTAGAGCAATATAGGTAGAATTGTT
GTAGAGACTTAATtggactaattttcgcgagaattAATTTGGCATTTATA
TTAAAGTTTTCTTTAGTGTAATNAGAGACTTAATTGGACTAATTTTCACG
AGAATTAATTTGGCATTTTCATTAAAGTTTTCTTCAGTGTAATTTCGTCG
AAAACCGAGTATTTGCATAAAATTTGGCAAGACGAAAAGTCGATCAGATA
TATTAGCGATCTGCCTTGGATTTAGGCTCCTTTAATATAGGACTTTAAAA
CATTAGAACTTTGAAATATAGATACAGTCACTCTTTGATTAACTTAATCG
ATTTTAGAACAATTAGGTTAATCTATATGAGGGGCTGACTATCAGAAAAA
TAATCCATTTTTGGTTAATTATTTTTGGTTTCTTGTTAACCAACGTAATT
AAAATTCCGAaattgtaattttctttttggtttgACCTGGACTGCCCAGT
GAACACGATCTTTTTCTCAAGCTAAATGACGCACATTCCTTTAATTCATG
TCTTAGTTAGACGGACGATGTTTTATCGTTTTGAGCCATCCGGGTAGCTT
AGGGGGTGAACGGGTGTTGgaaacaccgaaataccgacgttTTTCTTGGA
TCACCGTCCCACCGACAaccaaaaattgctaaaattctTTCTTTGTTGTA
ACACGGCACGTTTGACAACGTAATATCGTGTCCTTTTATTTTGAACACCG
AAACATCGACGGACTAATACCGTCACATCGCCAAACCCGTATGTATTCTC
CCCCTTTTTAGAACATATATTTCGTGTAATACACTTTTATTATATCAgaa
gaattttaaaagaaaaattaggctcaaaattgccaaaaaataagaacaat
taaagaacaatgctgagcctaaaattactcaaattcaagcaatttagggg
ttaaagtagtaaaaatttgaatataacgCCTAAAATTCCTCAATTGCATC
ttagaaataagaacaggataagaataatttgaggctcaaagtcccaaaaa
ataaatttctggttcttataaaaaaaagtgtattcgattcattaaaataa
atcatTGTTCATCAGTCTTCAAAGTGATCTGTCAACAACTTATGACTTTC
GATGACACACTGTTATAAGATATGACAATAGCAATACCCATTTTACAGAC
AGTCCCGAAATTATTTCATCATGTTTAATTTACTTAGTTACTACAGTATT
TGGTGACAAACGTCTGTATTCAAATGTATTGTATAAATTtgtgtttgctt
gtttttcagATTTGCTAAGATATCGTATCCCATATCTACTTTAGACCCAA
AGAAAGGATTTTTTGTCATATACGTTTTTTCTAttcgtacacgtttttta
cataagaacataaagtATAATAAAAACATAGGGCTTCGAGACtagaaaat
cttaagaacattctaagaacatttcaaggcttaaaacccagaacattaag
gaaacccgaaggcttcaaaaatatctttaacattcttataaaaaacgtgt
acaaaaataataacatcaatATGCTAACGAATTTGGTGTCCTGATTACAT
ATCTAGTTAGTTGGTTATGAAAGGGAAACGCCATCTTTGTATCCAATTAG
AGATCATGTTTGATGGTGTACAAATTGTCGTGGATTGTTTCGATTGTTTT
GCTCTGTCATATATGGGTACTAATAGGACATTCTCTTTCATGATTAATTT
GCGTTTATTGAAGTAGTCCTTGTATCAGGATTGAGTATATTATCCAAGGA
ATGTAAACAGAAAAGCTGTCCTTATCAGCAGAGGACCCACCCAGTCTCAT
AATATTATAAAGTTTATGTGAGGTAGGTCATCCTCACATTGGTAAAACGA
AAATCACATTTGTATGGCTTTGGATGAGGAGGATAATTTCTTAAGTGATG
ATACAGGGTGTTCAATATTGCTCTAAACGTCGTAATCGATTGAATTAGAA
TCTGGTATATTGTCTACTCGTGCCTGAAATGTTTAGGGCATTTTGTTTTG
GAGATGGGGAGAAGCATAGAGATACTAGGTGGTGGTACTCGATCTAGCAT
CGTTAGGAAAAGCTTAAAACAAGCTTATACAGTCGACGCTCTCTAAtccg
atcttcaaggggaattgggttttcattgaataaggtcgaattagagagtg
tcaactgtacaTTCAACATAAAGGATTGGGTCGGTTTCAAAGCGAGAGCA
AGTACAACTTCAGTCGAGGTTGCTTAAATTGAAACAAGGCATTTGCTACG
ATAGTAGATTCTAAAAACAACGATAGACTCTTGGGAAAAATCCCATCTAA
GATTTCTTGATTTTNTCTAAACGTCGTAATCGATTGAATTAGAATCTGGT
ATATTGTCTACTCGTGCCTGAAATGTTTAGGGCATTTTGTTTTGGAGATG
GGGAGAAGCATAGAGATACTAGGTGGTGGTACTCGATCTAGCATCGTTAG
GAAAAGCTTAAAACAAGCTTATACAGTCGACGCTCTCTAAtccgatcttc
aaggggaattgggttttcattgaataaggtcgaattagagagtgtcaact
gtacaTTCAACATAAAGGATTGGGTCGGTTTCAAAGCGAGAGCAAGTACA
ACTTCAGTCGAGGTTGCTTAAATTGAAACAAGGCATTTGCTACGATAGTA
GATTCTAAAAACAACGATAGACTCTTGGGAAAAATCCCATCTAAGATTTC
TTGATTTTCCGTGTTGGCAGATTTACTATGCTATTTGCTATATGACTGTC
AAAAATATATTCTTGTACGAAAAAACTGTTGATTACATATTAATCCTCGT
GATTATCAAATCTTTTCCTTGTTCAAAAAGTTCGAATCTTATTTCAATTT
CATCCTTGGTTTTTTACTCTACTATAAGGTAACTAAATTTGTAGGATACA
ATTTTAAGGATATAATTGTCGTGTTATATAATTATTGTAAACTATAGTTT
TAAACCAGTCTTACCTATTTCTCCCTTTTAAATCGAGTGGTCAAGAGTTT
TGGCCTTACGTTTGGGACTATAATGGTTGATTTTGATGTATACACACGTC
GAAAAAGATTATGGATCGATGTATATTTGGTCACATTTTTGGACCGTGAC
TTATATTTATATTTGGGCTAAGTATTTATGTTTtgggaacaaaaattttt
taaataatattttgacaaaCTTGTTTTGTGTTTCCTTTCGCCATTAAAAG
TGTCGTGACATTTGTTCATAAAACAGCTTTGTGCTTGGGTTTGCCTATGT
GatatttttaatcgaaaatCAGTCACGCATACTAACTTCAACAGCTAGTG
TTTGGAAAATAGACTCAATGAAAGTTAAACCTAGTTACTCTTAACATAGG
GTATGTAAGTCAAGGTCCGATGTTTCTCTTTGGAAATTTCTGGTATGATG
CCTGGACGCCTTTCATATATTAAGTCACCTTAGTCAAATATAACGGCTAA
AATTATTAAAGCCCTTTTTGTGTTTTGTGTGGTTATGGTATCACGTTTTT
GTTAAGGTTTTGCCGTGCTGTTCGTGTTTGCATTCCggtagaaaaaaaag
tttgtttttctctATGATCTAtgggttttcttttttttgtttgttaataT
AGAATATTTCAATCATCTAAAACTAAAAATACCCATGTGAAGCTCTTGGA
TGTTTTCCGTAAAAGCTATATAAAGTGACGCcgtccaaatttgaaatagc
ACTTTTTTCTATAGACTAACCCCTTGATATTTTTAGTAGCAGCCACCAAG
TCGATACCTTCACAATTTGGCATAGCACTTTATTCTACAAGTTAATCTGA
AAACAAGACAGGCTTTTCTCGCAAAACCAACATTTTACGCCAAAGCATAT
CTTCTTTGTTTCCAAAGAAGCCTGTAGAAAAGTACCGTAACGTGGACGAA
GGCTCAAGAAACTCTGTTCATCGTTTCAAGATTCGTTAATATAAGGGAAA
TTTTAAACTCGAAATCCGAATCTAAATGGTTACGAGTGAATGATATTTGA
TCAATAAGAAGAGAACTGAATTTAGTTGTATATCTAATACTTGATGTGTT
TCTTTGTAGGctacaaaatattacaaaaacatGTCCGAAAAAGATTTTCT
CGATGTTTTCCGTAAAGAATATAAAGTTGATGCCGTCACTTTTATGAAGG
TTAGTTGTTTGACTCGCTACAttctacacccccttctcacagacccactg
gatcttcttgtggaaaattatactccaatttttgtccccgctgaaaataa
tcagtcaaggaaatcctcactgcaaaatagtGTGCTATTTTTTCGATCCA
CCCTGAATTTTCTTGCTGGAAAtcataaaagaattgaaatcccaagaatt
gaaaaatatttggttGGTATGCCGGTATTTCATGAAAAGATTACCGGTAT
TCCAGTACTTTTTATCCACGGAAGCCCCTCACTATATATTTGAGGGTACT
TTTAGGCAACTCTgactttcaaatgaaaaaatgagTCACTAgcagaatta
aaaaattaattcatcTCTTCATCCGACTCTTTTCCGGGAAATAACGCTTT
AACAATTCTCGTCATTAGTCCCGGGAATTTAACCTAGATTCCCTTCATTA
TTTCTTGgctattttttatgaataaccGAACTGGACTCGTGTAAAACTGG
AAGGAATTAGCTACAGTTTCATCGAATGTGTTACAATCGTTTAGCTTTAA
ATTCCATGACATTTGTGTATAAGagcacccctgtctcgcagccccgaTCG
AATTTTTCCAACAGCTTGAGATAAAAGTTTTATCGAATTTCCAACGGTGA
TAGAAGCTCTTTTGTTCCAAGCTCAAAAAATCAGAATGGTTTTGGACCGC
aattttttctattgaattttaaatggggATCAAGGGATTCAATCAAAGTC
CTTTTCccaatggggctgaaattgaagggtatttttcccaccggggacca
aatttttgaccaaatttttgaccaaattttccaaTGGTCAGGTTGGAGGT
GACACGGTGGTGTATATGatagattttttttgattttttttttatttctt
actATAATTTTTTACTTTCCAGGCTTTTGAAGAGGCAGATGAGGATGGCA
ATGGACAAATTTCTTCTTCAGAACTCATTGTAAGTTTGCTGTtttaaaac
ttcatcatcattATTGACAGGGAGTCTTTGATAACTGACGGAAAAACGCT
GGAGATTTTAGGAACTTAAACTCTCATATGATTATTTGCAACGAGATCTT
TAAGCCTGATTTTTGGACCTCAAATGTGTTAAAATATgtcaaacgttttt
ttttaattcaatgaTTTTGAAATCCTGTCAGAGATtaaaaatggttgttt
tttgTACCTGGATTGGTTAAATATTCTTATCCACTTTCTTTACAActaga
aatttttaaaagcatTGGGTGTGGACGCCAAAGAAACTGAAGAACTCAAA
GAACACATTGTAAGTAGTGATGCCGGTCACGGTTTTCTTGATCTAGGTCC
CGTAAAAGTATCAATATGAACAACACCTGATTTGTAACTGTTCAAATTAA
GAATGAGctgtacatgtttttcttttatgagAACGTTCAAAGAATTTTTA
ATCTTCGgattttcttagtttttttagttttgcgagatgctcttaaaatg
ttctcatttttttcaccattttgtgagttaTCTTGTGTAATTTCTTATCA
ACTTTCATGTTTTAAAGTCCACAAATCTTCAAAATGTCCTAACTTGCCGA
TAACTTCGTAGccttatgtttttttatattaagAATTTCTTCAAATATAA
CAGACGTCTAAAATCGTTTGGTTGAGCTAGGatctaaaacatttttctgt
GTTCCTAACTGCATCATCCGTTATAACTTACTAGAAAATGTTATAATAGT
GTACAAGCTTCGCTATATTAATTCTAGATTGAACTATACGACAAAAATCA
TGATGGAAAACTTGGGCTAACAGAACTCTCAAAGTAAGTTGTTTAGAATC
TTACCACAAAAGTACCACAAGTTTGACAGCAAAAACTCTGAGGCATTAGG
TATGATCATTTATTTACAAGAAGAACCGTATTTAAAGATGTCTTATTTTG
AAGGTATCTTTTTCTTGTGTTTCATGTGTTTAATCATATCCTTTGCATCG
tattctgaaaatgaataatCAGTAACTTAATTTCGCTTTTCGATTTTAGA
TTATTACAATCTGATCAAAATGTATTGAAAGCCTTCGTCGAGGTAAGTTT
GCTTGTTCTTTTTGCACTATGCTAGATATCCTATCCNTTTCTTTTATGAG
AACGTTCAAAGAATTTTTAATCTTCGgattttcttagtttttttagtttt
gcgagatgctcttaaaatgttctcatttttttcaccattttgtgagttaT
CTTGTGTAATTTCTTATCAACTTTCATGTTTTAAAGTCCACAAATCTTCA
AAATGTCCTAACTTGCCGATAACTTCGTAGccttatgtttttttatatta
agAATTTCTTCAAATATAACAGACGTCTAAAATCGTTTGGTTGAGCTAGG
atctaaaacatttttctgtGTTCCTAACTGCATCATCCGTTATAACTTAC
TAGAAAATGTTATAATAGTGTACAAGCTTCGCTATATTAATTCTAGATTG
AACTATACGACAAAAATCATGATGGAAAACTTGGGCTAACAGAACTCTCA
AAGTAAGTTGTTTAGAATCTTACCACAAAAGTACCACAAGTTTGACAGCA
AAAACTCTGAGGCATTAGGTATGATCATTTATTTACAAGAAGAACCGTAT
TTAAAGATGTCTTATTTTGAAGGTATCTTTTTCTTGTGTTTCATGTGTTT
AATCATATCCTTTGCATCGtattctgaaaatgaataatCAGTAACTTAAT
TTCGCTTTTCGATTTTAGATTATTACAATCTGATCAAAATGTATTGAAAG
CCTTCGTCGAGGTAAGTTTGCTTGTTCTTTTTGCACTATGCTAGATATCC
TATCCAGAACCTCCCTTCCCAATTCGAGATTTTCGAGAGAAAAGAAGTTT
GGGAAGGTTTTAGCCAATCAAACGGCGACTGAAAGCTTATCGACTTTGGC
TTATCATTAAACTGTTAGTTTGTTAGATATTTTCCAGGGAAGTGATATTC
TGTGTCAATGACgagttatcttttttttttcaattccaggGTGAAGACTT
AACAGAAGAAAAATTCAATGAAGTTTTTGCTCACTACGATCGCGTAAGTT
CGACAGACTCTAAGATCGCAGAACTTTTTGCCATTTCCCTAATCATTGAC
TATAAAAGTTTTGTTCGTAAAAAATTATGTGCTGTATTCTTAGTGTGTGT
TACATGCAAACCTGATTAAAATTACTTTAACCGGGCAAATCTTCACGAGA
TTTAATCTTGAGAGCAAAAAATTTGCGAATTTaatttggatttatttttt
gcaggaatttaatttcgcaaatcagCCAAGAAAACTAGCTTAATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcggatt
tttcataccaattttgaaaaacaggcggcaacgaagctcgcttcaaagag
acaataaaagatagatgtccagtcgtttatatgttcatggctTAATACAC
CAGATTTTGTAAGATCAGCAAATTAACAGGGATACGAATTTTTAGCCGGa
aataagaatttgaatatttcacgtagatttatttttgcgaGATATTCTTT
TCTCGAAAAAGGCCTAAATTTGCGAAAACAcaaaattaaatccaaaatAC
ATATTAATCCGAATAAAATAGAAGATGTCACTGTTCTTTCATCAATTGAT
AGAATTATTCAAAGTTGAATTTAGCTTATATTTTGCTTCAGGATAACGGT
GGTACGATCAATAACAGTGAATTGAGTGGTTTCTTAAAAGATATGAAGTC
AACACAAGATGTTGTAagtaaaactttcaaatttaaatCATACTATGGGG
TGTACGGGTTTAACCGTGTGGCGGTATTTACCCCTTTTTTCGATCGAGAG
AAAAAGTGACGGTGTTTCGGTATTAAACATGCGGTGACAAAATaacgaat
ttttcgaaaaaaattactGTTGGCGTTGACGATGGTCCAACAAAAATGCG
TACGACCATTATATTCATGGTATTATCCGCGTAATGTTTTTTACGGAAAT
AgtccggtttttgccagtagtgatAAAATTTCAACAGTTTTTCTCTAGTa
tatatttcttaaatttgccactactggcaaagcCGGGGTGTttctgtaga
aaacattacgtttTACGTTATGAATATTACGAATCTATGTTTTCTCGACA
TTTTGTCCTTATAATTAATTTGAAAAGCCTACACCTAAACCTGCTGGTGT
TACCCCTTCAATGAATAAAATACTGTTTGTGACAGTTTTCTACTAAAAAA
TGGGATACTCTCATTGATCCaaagatattcttgttttatGATGTTTATGA
TTTGAAAAGGAGGCGCGCTTCTATACTGGCAAGAGGAATAAAcgaaagaa
tttctcaaaatttgtgatCTTGTGGTGCTGGAGACTGTGACCAAGTGTCT
TTCTTTTGTATCGAAAGGCTGTGTAATCGATATCTAGGATATACTTTAAA
TTATGTACTTTAAGGcacaatacacaggttgcaaaattcaAGACTGTAGA
CAagtcacgcttttactcgaatttttatgtgcttgttacatgacatcata
gtataagaaagccgctgCTGGAATATGTACCAACCACATTGTCttctcag
ttaattgctgttctatctctgtctccgagctttataagaacatcaagatg
ctcagtttattattggtagatagcttttgaaatttttctcttaatttcct
tcacaaaaagtttttttattgctagatatctttgaatctgtacccaatag
aacacttgaactaatttggaCATATAGACCAGCGTCCGTGTTCGATAATT
CTTTCACttcatattttaggggtattttgtggaaaaaatagtttttcgcc
aaaattgagattataagaactatattcaagatgacaactttcttgtcagt
ttgaatgataagttttgaaggtgctggcttgaaactttcacagtattatc
tagatgtactttttcattgatttctaaacagatttcactgaaatattgcg
aaggcattcgaggcactttgtttatttttgatttctttcagcgcagccat
tttgtgcttgtttaaatttcttattgttgatctttcctttacaatgattt
tataatgcaagtgtattatcaagggtatatcattaatgtctaaaacactg
agaagtaagtattaacgacaaaccaataaaatttaccattaaagatgcta
cattactgatctcTTGATCtaaaaatagtcatcaaatacgacagagatag
aacaacagaagttcactcaagtgagttacggcatgtccaaagaaaaagtg
aaccagttccactcattttcaaaatgtcaaacatagctggaaagaagcgc
cttGTGATGTATATCAACGTGAtaggtgttagaaaaatttaacttaaggc
tataagaagttatagcccaaaaacctgtattatgacgtcataaacattac
ataacattacgtcataaaactaaaaatttgaatatctcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGTGAACTAAAAGTCATATAaacgtcaaattttgaccacaa
atagatattgatgtaagaaaatttctgagttaaaaatcttttgaaaaaaa
tgatgacgtcatttattatagccaaaaatcgaaaattgcttaaaaatgct
gacttcatcatttttcaggagatttcgaaaattttactTCTAGAGAATTA
CAATATATTTGTTCTGTCAAAATTACATATTGATATCATTAATAGTTTAT
gagttatttaaattttaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTACATCATATGGCGCTTCTTTtcagctatgtttgacattttgaaagt
gagtggaactggttcacttttaccttggacatgccgtaactcacttgagc
agatgttatcattccagccgcggctttcttatacagggtgtccctaatta
aagtatcgagtttgaacatgcgattgagtagaaaagtttgtgtgtgttaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtgtgtgtgttatcgctaaaatataagaacgttctccatcacacag
gcttattacaaaaggtagttacaacgtataaattaatcgtaatgacaaag
aaaaacgagggagagcttaaaatacaattttgtgaatacacacataaaac
tttctactcatagttgtgtttcgactggatactttaattagggacaccct
gtactatGATGACATTTACTTCTGACTGGTTAGataatttattgacacta
ataaatttatcagctgtaagttgtaaagcaagtaacatgggaataaaatc
acgtgaactttttcgagtaatcatatgttttgactgcattgatataaNct
gtaagttgtaaagcaagtaacatgggaataaaatcacgtgaactttttcg
agtaatcataTGTTTTGACtacattgatataatttttgcAGCCCGTTTAT
TTTGGCGCGCTGTTAAGGGTTGATGTGCGTGTGTTTCCAGGACTTTGAAT
TAGATATCTGTGTACTCTCCATGAGGTGAGTACCAATTTGTCAACGAGAC
CTAGTTACATTTGATCCACTAATTTCCAACAATTTATTTAGAATGTGGAA
TCGAAAGAACTGAAAGAATACGAGATTTGGATCCTCGGTGAAGCAGATAA
AAATAATGATGGTGAACTTTCAAAAGATGAACTTCGAATGTTATTCTTCG
GTTAAAAACAAGACTCCACGATAAAAAAATATCGTATTTGTATACTGAGA
ATTAGCTTTTTATAGAGTAAATTTATAATGTGTTAttaatttttgtacat
tttcatATTATTTCAAACTAAATTTTTGACTCTGATACTTCTGTCAAATA
TGCTACATTAATTACCAACTAGTATAATCAACATGGTACATTATAATATT
TCGTTCTTATTTctttctttgaagaaaattacTCTTGATTTTAAGATGTT
ATACAACTCAGAGAAATTTAAGGACTCGTTATCTTCATTGAACTACAAAG
AAGccattgattttttctgcaaatattatataattgtttttttgtaaact
tctactatattatatattatatctATATTCTTATAATATTTTGATGATTA
CATCGAGACATCAATAATGCAATAAACATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031040XLOC_031040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048834-exon-scaffold_147-1491911889:240031..240150TCONS_00048834-exon-scaffold_147-1491911889:240031..240150Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:240031..240150TCONS_00048834-exon-scaffold_147-1510915933:240031..240150Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:240031..240150TCONS_00048834-exon-scaffold_147-1575043694:240031..240150Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:240382..240480TCONS_00048834-exon-scaffold_147-1491911889:240382..240480Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:240382..240480TCONS_00048834-exon-scaffold_147-1510915933:240382..240480Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:240382..240480TCONS_00048834-exon-scaffold_147-1575043694:240382..240480Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:240981..241166TCONS_00048834-exon-scaffold_147-1491911889:240981..241166Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:240981..241166TCONS_00048834-exon-scaffold_147-1510915933:240981..241166Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:240981..241166TCONS_00048834-exon-scaffold_147-1575043694:240981..241166Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:245890..245979TCONS_00048834-exon-scaffold_147-1491911889:245890..245979Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:245890..245979TCONS_00048834-exon-scaffold_147-1510915933:245890..245979Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:245890..245979TCONS_00048834-exon-scaffold_147-1575043694:245890..245979Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:246903..246959TCONS_00048834-exon-scaffold_147-1491911889:246903..246959Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:246903..246959TCONS_00048834-exon-scaffold_147-1510915933:246903..246959Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:246903..246959TCONS_00048834-exon-scaffold_147-1575043694:246903..246959Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:247230..247289TCONS_00048834-exon-scaffold_147-1491911889:247230..247289Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:247230..247289TCONS_00048834-exon-scaffold_147-1510915933:247230..247289Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:247230..247289TCONS_00048834-exon-scaffold_147-1575043694:247230..247289Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:247758..247813TCONS_00048834-exon-scaffold_147-1491911889:247758..247813Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:247758..247813TCONS_00048834-exon-scaffold_147-1510915933:247758..247813Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:247758..247813TCONS_00048834-exon-scaffold_147-1575043694:247758..247813Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:248030..248072TCONS_00048834-exon-scaffold_147-1491911889:248030..248072Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:248030..248072TCONS_00048834-exon-scaffold_147-1510915933:248030..248072Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:248030..248072TCONS_00048834-exon-scaffold_147-1575043694:248030..248072Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:249020..249073TCONS_00048834-exon-scaffold_147-1491911889:249020..249073Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:249020..249073TCONS_00048834-exon-scaffold_147-1510915933:249020..249073Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:249020..249073TCONS_00048834-exon-scaffold_147-1575043694:249020..249073Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:250022..250093TCONS_00048834-exon-scaffold_147-1491911889:250022..250093Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:250022..250093TCONS_00048834-exon-scaffold_147-1510915933:250022..250093Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:250022..250093TCONS_00048834-exon-scaffold_147-1575043694:250022..250093Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1491911889:253322..253861TCONS_00048834-exon-scaffold_147-1491911889:253322..253861Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1510915933:253322..253861TCONS_00048834-exon-scaffold_147-1510915933:253322..253861Clytia hemisphaericaexon
TCONS_00048834-exon-scaffold_147-1575043694:253322..253861TCONS_00048834-exon-scaffold_147-1575043694:253322..253861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:240031..253861 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.662683	0.758692	0.275135	0.134588	0.335733	0.136237	0	0.149826	0.209797	0.194892	0.0647634	0.235906	0.170055	0.397359	0.181304	0.222425	0.19195	0.323608	0.203857	0.0711074	0.494442	0.180879	0.659645	0.799617	0.549058	0.41945	0.613566	0.280635	0.212852	0.722873
Blast
[Close]
BLAST of TCONS_00048834 vs. Swiss-Prot (Human)
Match: SEGN (Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 8.501e-21
Identity = 57/180 (31.67%), Postives = 101/180 (56.11%), Query Frame = 1 
Query:  433 EKDFLDVFRKEYKVDA-VTFMKAFEEADEDGNGQISSSELIKFLKALGVDAKET------EELKEHIIELYDKNHDGKLGLTELSKLLQSDQNVLKAFVEGEDLTEEK---FNEVFAHYDRDNGGTINNSELSGFLKDMKSTQDVNVESKELKEYEIWILGEADKNNDGELSKDELRMLF 942
            +++FL +FR+E  +D+ V FM+ + + D D +G IS++EL  FL+ L +  K+       EE    +++++D+N DG+L L +L+++L   +N L  F      TEE+   F ++FA+YD    G +   E+ GF+KDM      ++   +L ++   +L   D N DG++ K EL +  
Sbjct:   91 DENFLLLFRRENPLDSSVEFMQIWRKYDADSSGFISAAELRNFLRDLFLHHKKAISEAKLEEYTGTMMKIFDRNKDGRLDLNDLARILALQENFLLQFKMDACSTEERKRDFEKIFAYYDVSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCL 270
The following BLAST results are available for this feature:
BLAST of TCONS_00048834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEGN8.501e-2131.67Secretagogin OS=Homo sapiens GN=SCGN PE=2 SV=2[more]
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