TCONS_00048870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048870
Unique NameTCONS_00048870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048870 ID=TCONS_00048870|Name=TCONS_00048870|organism=Clytia hemisphaerica|type=transcript|length=450bp
GAATGTTTATTGCATTATTGATGTCTCGATGTAATCATCAAAATATTATA
AGAATATagatataatatataatatagtagaagtttacaaaaaaacaatt
atataatatttgcagaaaaaatcaatggCTTCTTTGTAGTTCAATGAAGA
TAACGAGTCCTTAAATTTCTCTGAGTTGTATAACATCTTAAAATCAAGAg
taattttcttcaaagaaagAAATAAGAACGAAATATTATAATGTACCATG
TTGATTATACTAGTTGGTAATTAATGTAGCATATTTGACAGAAGTATCAG
AGTCAAAAATTTAGTTTGAAATAATatgaaaatgtacaaaaattaaTAAC
ACATTATAAATTTACTCTATAAAAAGGTAATTCTCAGTATACAAATACGA
TATTTTTTTATCGTGGAGTCTTGTTTTTAACCGAAGAATAACATTCGAAN
Run BLAST on NCBI

transcript from alignment at scaffold_147:257037..257486

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048870 ID=TCONS_00048870|Name=TCONS_00048870|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_147:257037..257486 (Clytia hemisphaerica)
NTTCGAATGTTATTCTTCGGTTAAAAACAAGACTCCACGATAAAAAAATA
TCGTATTTGTATACTGAGAATTACCTTTTTATAGAGTAAATTTATAATGT
GTTAttaatttttgtacattttcatATTATTTCAAACTAAATTTTTGACT
CTGATACTTCTGTCAAATATGCTACATTAATTACCAACTAGTATAATCAA
CATGGTACATTATAATATTTCGTTCTTATTTctttctttgaagaaaatta
cTCTTGATTTTAAGATGTTATACAACTCAGAGAAATTTAAGGACTCGTTA
TCTTCATTGAACTACAAAGAAGccattgattttttctgcaaatattatat
aattgtttttttgtaaacttctactatattatatattatatctATATTCT
TATAATATTTTGATGATTACATCGAGACATCAATAATGCAATAAACATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031057XLOC_031057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048870-exon-scaffold_147-1491911889:257037..257486TCONS_00048870-exon-scaffold_147-1491911889:257037..257486Clytia hemisphaericaexon
TCONS_00048870-exon-scaffold_147-1510915933:257037..257486TCONS_00048870-exon-scaffold_147-1510915933:257037..257486Clytia hemisphaericaexon
TCONS_00048870-exon-scaffold_147-1575043694:257037..257486TCONS_00048870-exon-scaffold_147-1575043694:257037..257486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:257037..257486 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.790115	0.104035	0	0	0.446984	0.11327	0.636837	0.165903	0	0	0	0.155555	0	0	0	0.215425	0.496756	0.509615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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