TCONS_00048873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048873
Unique NameTCONS_00048873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048873 ID=TCONS_00048873|Name=TCONS_00048873|organism=Clytia hemisphaerica|type=transcript|length=342bp
TGGACGATGGACCTTCTGCTGCATCAGCTGTGTTGAAGTACCGAAAGATC
TCCCTGCTCTTTGTGGTGCAGTTGAGGACGACGACTTTACCAAACTAAAA
AATGATATCTCAGAGCGTGATCGTGGTATCGAAGTATATGACGATAATGA
GAGTAAGTTAATCAAGTCAGTCCAGACAATAAAGTCCCGTAATGCAAAAC
TCAAAGACAAGTCAATCGAGAGATGTACTGTCGAAGAAATGAACGATAAA
ATCCATGAGAAAATCACCGAACTTGGTGCAACCATGAAGGCGTCAATTAT
TGATGAAATCAAAGCGACACTCTTGAGTGTTGAAAACCAGAT
Run BLAST on NCBI

protein sequence of TCONS_00048873-protein

>TCONS_00048873-protein ID=TCONS_00048873-protein|Name=TCONS_00048873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
GRWTFCCISCVEVPKDLPALCGAVEDDDFTKLKNDISERDRGIEVYDDNE
SKLIKSVQTIKSRNAKLKDKSIERCTVEEMNDKIHEKITELGATMKASII
DEIKATLLSVENQ
Run BLAST on NCBI

transcript from alignment at scaffold_147:265203..265544

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048873 ID=TCONS_00048873|Name=TCONS_00048873|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at scaffold_147:265203..265544 (Clytia hemisphaerica)
ATCTGGTTTTCAACACTCAAGAGTGTCGCTTTGATTTCATCAATAATTGA
CGCCTTCATGGTTGCACCAAGTTCGGTGATTTTCTCATGGATTTTATCGT
TCATTTCTTCGACAGTACATCTCTCGATTGACTTGTCTTTGAGTTTTGCA
TTACGGGACTTTATTGTCTGGACTGACTTGATTAACTTACTCTCATTATC
GTCATATACTTCGATACCACGATCACGCTCTGAGATATCATTTTTTAGTT
TGGTAAAGTCGTCGTCCTCAACTGCACCACAAAGAGCAGGGAGATCTTTC
GGTACTTCAACACAGCTGATGCAGCAGAAGGTCCATCGTCCA

Coding sequence (CDS) from alignment at scaffold_147:265203..265544

>TCONS_00048873 ID=TCONS_00048873|Name=TCONS_00048873|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_147:265203..265544 (Clytia hemisphaerica)
CTGGTTTTCAACACTCAAGAGTGTCGCTTTGATTTCATCAATAATTGACG
CCTTCATGGTTGCACCAAGTTCGGTGATTTTCTCATGGATTTTATCGTTC
ATTTCTTCGACAGTACATCTCTCGATTGACTTGTCTTTGAGTTTTGCATT
ACGGGACTTTATTGTCTGGACTGACTTGATTAACTTACTCTCATTATCGT
CATATACTTCGATACCACGATCACGCTCTGAGATATCATTTTTTAGTTTG
GTAAAGTCGTCGTCCTCAACTGCACCACAAAGAGCAGGGAGATCTTTCGG
TACTTCAACACAGCTGATGCAGCAGAAGGTCCATCGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031060XLOC_031060Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048873-proteinTCONS_00048873-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048873-exon-scaffold_147-1491911889:265203..265544TCONS_00048873-exon-scaffold_147-1491911889:265203..265544Clytia hemisphaericaexon
TCONS_00048873-exon-scaffold_147-1510915933:265203..265544TCONS_00048873-exon-scaffold_147-1510915933:265203..265544Clytia hemisphaericaexon
TCONS_00048873-exon-scaffold_147-1575043694:265203..265544TCONS_00048873-exon-scaffold_147-1575043694:265203..265544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:265203..265544 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.856983	0	0	0.22366	0	0	0.963189	1.20869	0	0	0.354221	1.28092	0	0.151469	0	0	0	0	0	0	0.519924	0.855857	1.05353	0.572792	1.16185	0	0.255853	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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