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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048875 ID=TCONS_00048875|Name=TCONS_00048875|organism=Clytia hemisphaerica|type=transcript|length=2606bp
ctttagtttAGTTTGTTTTGGTGTTCTAATGAAACCCTGAAACTTTTCTT
CGATTCGGATCACTAGATCAGAAGatatttcactttcgttttcagattcc
ttcacctatttttgctagccgattcgcgaaattaaattaaattttcgtGA
ATTGCCTGACTCGCGGACCTTTCTGGCCGCTAAAATCTCTGACATAAAAG
TAGTTTTGGATCCAGAAATCCTTCGCCAGCCAGCGAAATCGATTCCCGTC
AAATTtagttcctttaaggtaaatATCGCATATCCCAATTCAAATTATAA
AGGCAACTTTTTTAGTGAAATAACCAAGTTTTATGTTTATCTTATCCAGG
AAAGCTGAAGGAAAGATCTATCAAACAGCTGAAGTTTTTGGCCAAGAAGC
ATGAGGTCGACATTTCTAAATGCCTTGAGAAGCAAGACTTGATCAATGAG
ATTTTGTCATCCCGATCATTCATCGCCAGTTCTGACTCCTTAATCTCCGA
ATCATTGTCTAGTGCCAGCAGTAAGTCTCAACCGTCTACCACCAACCGTC
AGCCGCCTCCGAACACAACATCTACAACCAACGGACAGTCACCTCCGAAC
GCAACATCTACCACCAACCGACATCCGCCTCCGAACGCAACATCTACCGC
CAACCGACACTCGCCTCCGAACGCAACATCTACCACCAAAGGACAGCCAC
CTCCGAACGCAACATCTACCACCAACCGACATCCACCTCCGAACGCAAGG
ACAGCCACCTCCGAACGCAACATCTACCACCAACCGACATCCACCTCCGA
ACGCAACATCTACCACCAACCGACATCCGCCTCCGAACTCAACATCTACC
ACCAATGGACAGCCACCTCCGAACGCAACATCTACCACCAACCGACAACC
ACCTCCGTCGTTTTCTTATTCTTCTCCTAATAAGGGCTTCACAAAAACAt
ccaactcaaatgaaaaaaagtaaCAGAACAGAGTATACACAGACCCAAAG
ACTTGGAAAGATTGTGAAACTGTTTTTGTAGAAAGTGTTCCCTTCAACAT
TGATGGATTATGTAAATACGAACTTTCATTTGATCctgaaaattctatga
aatcaTCGAATGATGGACGACCATGGGGTGAACGGGTATCCTCAAGAACG
GAAGAGCATGGTAAAAAGGGAGCACGCAAAAAAGCTAAATGTCTTGGAAG
TTACGTTTGTAAAAATGACAATTGTTTATTTTACAGATACTACAACAAAC
CAAACAAACTACATTTCAAAAAGCAGTCTAAAACTTGTAAAATCTGTGGT
ACCATTGGTGAATTTGTAGAATGTAAAGCTGTTAAAGTCTGGGAGTTTGA
CGATGCAGAATTGATTGTTGTTATCAAACATAATGGGAATCACACGTGCG
AGGCCAAGAAAAAGCAGGAGGTTCCTGATGTCGTTTACGAAAAATTTTCG
AATAACCCTAAAGCCAGTGCCACACAAGTATCCGAAGACATTATAATCGA
TGCCATTGACAGAAACGAACCATGGGAGGAGATTTACAAACTTGTCGATT
CAACGTTATGTAAAGAAAATTTGTATTATGCTAAAAAAAAGGCAACGAGC
GATCCTCACGGGCAGAGTTTTGAAGCAGTAGCAATCCTAAAGAGTAAGAT
TGCGACCAAAGATCCGTACTTCATTTATCGCATTAATGACCGTAGCATGA
ACGAAAGCCCCAGTTTTGTATTCAAGATGTCAAAGGTGCAGGCTGACATT
GCATATGAAATGGATGAAAACAAAGGCGGGATGTTAAATGGCGAGTATTG
TTACATAGATGGTACGTTCAAAAGATGCAAAGGATACGTGACTTTGGCGG
CATATGTATATTTAGGGTTGCTAAGGAAAATGGTAAAGTTGGCTACAATG
GAGGCAGAGACCGAGCACGCTGATAATTGGACCAAATTCTGGCATTTGTT
CAATGAGGTATTGGAAAAACACAAAGGGAGTCGTTTTTCACCAGTTGCTT
GGTGCACAGACGAAGCAGGTGGAATTTGGAAAGCGTTGAAAGTGGTATTT
GGCGAGGATGCCGTAAAACACAAAACTGTCAGctgcgaaaaacatttttt
atggtCTGTTGACAGATACACAATATCACTAAGAAACGTATCAAATGccg
cagattttttcaaagaaacggCGTCCAAATTGATGACAAGTGTGACGAGT
GCAGAATACTTATGCGCACTTCAAGAGCTCAAAGAATTCATTGACACGAA
ACCGACCAAAAGAGGGTTCCTTCGTTCATTCATAGAGTTTTGGGATCAAA
GACGACACCATTTCAGTCGTGCTTTTAAACACGGAGATGCACCAAACACT
AACTTAAGTGAGGCGTATCACTCGTCATACGTAACTGCCAATAATATCAA
TCTTTCATTGGTGGAAGCAGCATATCGGGATACAGTCACAGCTATCAGAC
TGGATAGATCACTCGTAGCATTTGGGGATGGCAGTGACTGTCAAGGATAT
GGTCCCACTACGGAAGAAACGACATCAAGGAGCAAGCAAAAACAGAAGGA
AAAGGTAAGGCATTAAACATTAATTTCTTTCGTGGATTTATTTTTGAGAA
CGATTC Run BLAST on NCBI protein sequence of TCONS_00048875-protein >TCONS_00048875-protein ID=TCONS_00048875-protein|Name=TCONS_00048875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=489bp
MKSSNDGRPWGERVSSRTEEHGKKGARKKAKCLGSYVCKNDNCLFYRYYN
KPNKLHFKKQSKTCKICGTIGEFVECKAVKVWEFDDAELIVVIKHNGNHT
CEAKKKQEVPDVVYEKFSNNPKASATQVSEDIIIDAIDRNEPWEEIYKLV
DSTLCKENLYYAKKKATSDPHGQSFEAVAILKSKIATKDPYFIYRINDRS
MNESPSFVFKMSKVQADIAYEMDENKGGMLNGEYCYIDGTFKRCKGYVTL
AAYVYLGLLRKMVKLATMEAETEHADNWTKFWHLFNEVLEKHKGSRFSPV
AWCTDEAGGIWKALKVVFGEDAVKHKTVSCEKHFLWSVDRYTISLRNVSN
AADFFKETASKLMTSVTSAEYLCALQELKEFIDTKPTKRGFLRSFIEFWD
QRRHHFSRAFKHGDAPNTNLSEAYHSSYVTANNINLSLVEAAYRDTVTAI
RLDRSLVAFGDGSDCQGYGPTTEETTSRSKQKQKEKVRH Run BLAST on NCBI transcript from alignment at scaffold_147:278696..281301 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048875 ID=TCONS_00048875|Name=TCONS_00048875|organism=Clytia hemisphaerica|type=transcript|length=2606bp|location=Sequence derived from alignment at scaffold_147:278696..281301 (Clytia hemisphaerica)
GAATCGTTCTCAAAAATAAATCCACGAAAGAAATTAATGTTTAATGCCTT
ACCTTTTCCTTCTGTTTTTGCTTGCTCCTTGATGTCGTTTCTTCCGTAGT
GGGACCATATCCTTGACAGTCACTGCCATCCCCAAATGCTACGAGTGATC
TATCCAGTCTGATAGCTGTGACTGTATCCCGATATGCTGCTTCCACCAAT
GAAAGATTGATATTATTGGCAGTTACGTATGACGAGTGATACGCCTCACT
TAAGTTAGTGTTTGGTGCATCTCCGTGTTTAAAAGCACGACTGAAATGGT
GTCGTCTTTGATCCCAAAACTCTATGAATGAACGAAGGAACCCTCTTTTG
GTCGGTTTCGTGTCAATGAATTCTTTGAGCTCTTGAAGTGCGCATAAGTA
TTCTGCACTCGTCACACTTGTCATCAATTTGGACGccgtttctttgaaaa
aatctgcggCATTTGATACGTTTCTTAGTGATATTGTGTATCTGTCAACA
GaccataaaaaatgtttttcgcagCTGACAGTTTTGTGTTTTACGGCATC
CTCGCCAAATACCACTTTCAACGCTTTCCAAATTCCACCTGCTTCGTCTG
TGCACCAAGCAACTGGTGAAAAACGACTCCCTTTGTGTTTTTCCAATACC
TCATTGAACAAATGCCAGAATTTGGTCCAATTATCAGCGTGCTCGGTCTC
TGCCTCCATTGTAGCCAACTTTACCATTTTCCTTAGCAACCCTAAATATA
CATATGCCGCCAAAGTCACGTATCCTTTGCATCTTTTGAACGTACCATCT
ATGTAACAATACTCGCCATTTAACATCCCGCCTTTGTTTTCATCCATTTC
ATATGCAATGTCAGCCTGCACCTTTGACATCTTGAATACAAAACTGGGGC
TTTCGTTCATGCTACGGTCATTAATGCGATAAATGAAGTACGGATCTTTG
GTCGCAATCTTACTCTTTAGGATTGCTACTGCTTCAAAACTCTGCCCGTG
AGGATCGCTCGTTGCCTTTTTTTTAGCATAATACAAATTTTCTTTACATA
ACGTTGAATCGACAAGTTTGTAAATCTCCTCCCATGGTTCGTTTCTGTCA
ATGGCATCGATTATAATGTCTTCGGATACTTGTGTGGCACTGGCTTTAGG
GTTATTCGAAAATTTTTCGTAAACGACATCAGGAACCTCCTGCTTTTTCT
TGGCCTCGCACGTGTGATTCCCATTATGTTTGATAACAACAATCAATTCT
GCATCGTCAAACTCCCAGACTTTAACAGCTTTACATTCTACAAATTCACC
AATGGTACCACAGATTTTACAAGTTTTAGACTGCTTTTTGAAATGTAGTT
TGTTTGGTTTGTTGTAGTATCTGTAAAATAAACAATTGTCATTTTTACAA
ACGTAACTTCCAAGACATTTAGCTTTTTTGCGTGCTCCCTTTTTACCATG
CTCTTCCGTTCTTGAGGATACCCGTTCACCCCATGGTCGTCCATCATTCG
AtgatttcatagaattttcagGATCAAATGAAAGTTCGTATTTACATAAT
CCATCAATGTTGAAGGGAACACTTTCTACAAAAACAGTTTCACAATCTTT
CCAAGTCTTTGGGTCTGTGTATACTCTGTTCTGttactttttttcatttg
agttggaTGTTTTTGTGAAGCCCTTATTAGGAGAAGAATAAGAAAACGAC
GGAGGTGGTTGTCGGTTGGTGGTAGATGTTGCGTTCGGAGGTGGCTGTCC
ATTGGTGGTAGATGTTGAGTTCGGAGGCGGATGTCGGTTGGTGGTAGATG
TTGCGTTCGGAGGTGGATGTCGGTTGGTGGTAGATGTTGCGTTCGGAGGT
GGCTGTCCTTGCGTTCGGAGGTGGATGTCGGTTGGTGGTAGATGTTGCGT
TCGGAGGTGGCTGTCCTTTGGTGGTAGATGTTGCGTTCGGAGGCGAGTGT
CGGTTGGCGGTAGATGTTGCGTTCGGAGGCGGATGTCGGTTGGTGGTAGA
TGTTGCGTTCGGAGGTGACTGTCCGTTGGTTGTAGATGTTGTGTTCGGAG
GCGGCTGACGGTTGGTGGTAGACGGTTGAGACTTACTGCTGGCACTAGAC
AATGATTCGGAGATTAAGGAGTCAGAACTGGCGATGAATGATCGGGATGA
CAAAATCTCATTGATCAAGTCTTGCTTCTCAAGGCATTTAGAAATGTCGA
CCTCATGCTTCTTGGCCAAAAACTTCAGCTGTTTGATAGATCTTTCCTTC
AGCTTTCCTGGATAAGATAAACATAAAACTTGGTTATTTCACTAAAAAAG
TTGCCTTTATAATTTGAATTGGGATATGCGATatttaccttaaaggaact
aAATTTGACGGGAATCGATTTCGCTGGCTGGCGAAGGATTTCTGGATCCA
AAACTACTTTTATGTCAGAGATTTTAGCGGCCAGAAAGGTCCGCGAGTCA
GGCAATTCacgaaaatttaatttaatttcgcgaatcggctagcaaaaata
ggtgaaggaatctgaaaacgaaagtgaaatatCTTCTGATCTAGTGATCC
GAATCGAAGAAAAGTTTCAGGGTTTCATTAGAACACCAAAACAAACTaaa
ctaaag Coding sequence (CDS) from alignment at scaffold_147:278696..281301 >TCONS_00048875 ID=TCONS_00048875|Name=TCONS_00048875|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_147:278696..281301 (Clytia hemisphaerica)
TTAATGCCTTACCTTTTCCTTCTGTTTTTGCTTGCTCCTTGATGTCGTTT
CTTCCGTAGTGGGACCATATCCTTGACAGTCACTGCCATCCCCAAATGCT
ACGAGTGATCTATCCAGTCTGATAGCTGTGACTGTATCCCGATATGCTGC
TTCCACCAATGAAAGATTGATATTATTGGCAGTTACGTATGACGAGTGAT
ACGCCTCACTTAAGTTAGTGTTTGGTGCATCTCCGTGTTTAAAAGCACGA
CTGAAATGGTGTCGTCTTTGATCCCAAAACTCTATGAATGAACGAAGGAA
CCCTCTTTTGGTCGGTTTCGTGTCAATGAATTCTTTGAGCTCTTGAAGTG
CGCATAAGTATTCTGCACTCGTCACACTTGTCATCAATTTGGACGccgtt
tctttgaaaaaatctgcggCATTTGATACGTTTCTTAGTGATATTGTGTA
TCTGTCAACAGaccataaaaaatgtttttcgcagCTGACAGTTTTGTGTT
TTACGGCATCCTCGCCAAATACCACTTTCAACGCTTTCCAAATTCCACCT
GCTTCGTCTGTGCACCAAGCAACTGGTGAAAAACGACTCCCTTTGTGTTT
TTCCAATACCTCATTGAACAAATGCCAGAATTTGGTCCAATTATCAGCGT
GCTCGGTCTCTGCCTCCATTGTAGCCAACTTTACCATTTTCCTTAGCAAC
CCTAAATATACATATGCCGCCAAAGTCACGTATCCTTTGCATCTTTTGAA
CGTACCATCTATGTAACAATACTCGCCATTTAACATCCCGCCTTTGTTTT
CATCCATTTCATATGCAATGTCAGCCTGCACCTTTGACATCTTGAATACA
AAACTGGGGCTTTCGTTCATGCTACGGTCATTAATGCGATAAATGAAGTA
CGGATCTTTGGTCGCAATCTTACTCTTTAGGATTGCTACTGCTTCAAAAC
TCTGCCCGTGAGGATCGCTCGTTGCCTTTTTTTTAGCATAATACAAATTT
TCTTTACATAACGTTGAATCGACAAGTTTGTAAATCTCCTCCCATGGTTC
GTTTCTGTCAATGGCATCGATTATAATGTCTTCGGATACTTGTGTGGCAC
TGGCTTTAGGGTTATTCGAAAATTTTTCGTAAACGACATCAGGAACCTCC
TGCTTTTTCTTGGCCTCGCACGTGTGATTCCCATTATGTTTGATAACAAC
AATCAATTCTGCATCGTCAAACTCCCAGACTTTAACAGCTTTACATTCTA
CAAATTCACCAATGGTACCACAGATTTTACAAGTTTTAGACTGCTTTTTG
AAATGTAGTTTGTTTGGTTTGTTGTAGTATCTGTAAAATAAACAATTGTC
ATTTTTACAAACGTAACTTCCAAGACATTTAGCTTTTTTGCGTGCTCCCT
TTTTACCATGCTCTTCCGTTCTTGAGGATACCCGTTCACCCCATGGTCGT
CCATCATTCGAtgatttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048875-exon-scaffold_147-1491911889:278696..281301 | TCONS_00048875-exon-scaffold_147-1491911889:278696..281301 | Clytia hemisphaerica | exon |
| TCONS_00048875-exon-scaffold_147-1510915933:278696..281301 | TCONS_00048875-exon-scaffold_147-1510915933:278696..281301 | Clytia hemisphaerica | exon |
| TCONS_00048875-exon-scaffold_147-1575043694:278696..281301 | TCONS_00048875-exon-scaffold_147-1575043694:278696..281301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:278696..281301 . |
Blast
The following BLAST results are available for this feature:
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