TCONS_00048881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048881
Unique NameTCONS_00048881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048881 ID=TCONS_00048881|Name=TCONS_00048881|organism=Clytia hemisphaerica|type=transcript|length=313bp
CCTTTGTTGATGTAATCTTTGCAATGTGAAGCAAGTGGAAGGGTTGTGTT
TGTTTGACTATCCACCATGACAACTGACAAGGGTAGTTTGTATGCTAAGA
ACAATGAAGAGGCTTGGATGTTGTCGAAACCACCAGTGATAAGCAACGTA
TGGTGGTCCTTCATGGTCATTGAGTGTGAGTAAATGGCTCTCTTGTGAAA
TACATTGGATATACTGCCACCGTTTGGAAGTAAGGCCTCTGGTTTCGTCC
ATTGGTTACAATCAAGATTGAAAAAACGCAATCCGTTGAGTTCCCCACAT
GATGAAAAACCAC
Run BLAST on NCBI

transcript from alignment at scaffold_148:125291..125668+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048881 ID=TCONS_00048881|Name=TCONS_00048881|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_148:125291..125668+ (Clytia hemisphaerica)
CCTTTGTTGATGTAATCTTTGCAATGTGAAGCAAGTGGAAGGGTTGTGTT
TGTTTGACTATCCACCATGACAACTGACAAGGGTAGTTTGTATGCTAAGA
ACAATGAAGAGGTTTGGATGTTGTCGAAACCACCAGTGATAAGCAACGTT
TGGTGGTCCTTCNAAACAATGAAGAGGCTTGGATGTTGTCGAAACCACCA
GTGATAAGCAACGTATGGTGGTCCTTCATGGTCATTGAGTGTGAGTAAAT
GGCTCTCTTGTGAAATACATTGGATATACTGCCACCGTTTGGAAGTAAGG
CCTCTGGTTTCGTCCATTGGTTACAATCAAGATTGAAAAAACGCAATCCG
TTGAGTTCCCCACATGATGAAAAACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031065XLOC_031065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048881-exon-scaffold_148-1491911889:125291..125401TCONS_00048881-exon-scaffold_148-1491911889:125291..125401Clytia hemisphaericaexon
TCONS_00048881-exon-scaffold_148-1510915933:125291..125401TCONS_00048881-exon-scaffold_148-1510915933:125291..125401Clytia hemisphaericaexon
TCONS_00048881-exon-scaffold_148-1575043694:125291..125401TCONS_00048881-exon-scaffold_148-1575043694:125291..125401Clytia hemisphaericaexon
TCONS_00048881-exon-scaffold_148-1491911889:125467..125668TCONS_00048881-exon-scaffold_148-1491911889:125467..125668Clytia hemisphaericaexon
TCONS_00048881-exon-scaffold_148-1510915933:125467..125668TCONS_00048881-exon-scaffold_148-1510915933:125467..125668Clytia hemisphaericaexon
TCONS_00048881-exon-scaffold_148-1575043694:125467..125668TCONS_00048881-exon-scaffold_148-1575043694:125467..125668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:125291..125668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206883	0	0	0	0	0	0	0	0	1.46422	0	0	0.715728	0	0	0	0	0	0	0	0	0	0.14328	0.859764	0	0	0	0.0073633	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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